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Rosetta 3 - General

Topic / Topic starter Replies Viewssort descending Last post
Normal topic Cannot create cst files from upl files
by road runner » Wed, 2015-11-11 22:07
2
2,042 by road runner
Tue, 2015-12-01 10:08
Normal topic could restta consider the flexibility of backbone duirng protein docking?
by albumns » Wed, 2010-11-24 01:00
1
2,042 by smlewis
Mon, 2014-04-21 06:47
Normal topic SnugDock equivalent in newer Rosetta code
by SenyorDrew » Tue, 2016-03-29 09:16
2
2,042 by SenyorDrew
Wed, 2016-04-06 10:52
Normal topic Changing Monte Carlo temperature for relax
by jruhym » Thu, 2012-02-02 15:18
1
2,044 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
by sunlufinal » Mon, 2015-06-01 19:27
1
2,045 by rmoretti
Fri, 2015-07-03 12:58
Normal topic How to read the output score file from rosetta?
by Sunyp_IM » Sun, 2017-08-27 05:29
1
2,045 by rmoretti
Mon, 2017-08-28 09:32
Normal topic no template pdb provided for alignment
by HZHANG020 » Sat, 2014-06-14 06:27
1
2,052 by rmoretti
Mon, 2014-06-16 08:23
Normal topic How to generate a symmetry definition file for octahedral symmetry?
by Anonymous » Wed, 2012-08-15 05:20
0
2,054 by Anonymous
Mon, 2014-04-21 06:47
Normal topic RosettaDesign
by ac.research » Sun, 2019-07-21 01:20
2
2,059 by ac.research
Sat, 2019-08-03 08:12
Normal topic Getting started with Rosetta
by myang » Tue, 2009-04-07 16:25
1
2,060 by smlewis
Mon, 2014-04-21 06:47
Normal topic constrain files tutorial
by knutjbj » Fri, 2011-02-18 23:57
2
2,065 by smlewis
Mon, 2014-04-21 06:47
Normal topic decoy vs pose
by Anonymous » Fri, 2012-06-15 02:46
1
2,067 by smlewis
Mon, 2014-04-21 06:47
Normal topic Constraining a docking study
by jos » Tue, 2011-10-18 05:26
2
2,069 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Protein-Protein Docking
by hwillis » Fri, 2009-08-07 01:31
1
2,069 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error in RMSD calculation when native sequence deviates
by abdullah » Tue, 2009-11-10 08:56
1
2,074 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with ClashCountCalculator
by masterofpuppets » Wed, 2015-01-07 04:47
2
2,074 by rmoretti
Fri, 2015-01-09 10:59
Normal topic possible idealize app bug - residues being deleted
by jtmacd » Mon, 2009-06-08 06:27
2
2,074 by jtmacd
Mon, 2014-04-21 06:47
Normal topic error in cluster running
by albumns » Mon, 2011-09-05 00:24
1
2,082 by rmoretti
Mon, 2014-04-21 06:47
Normal topic prepack vs. relax with bb_cst
by Anonymous » Mon, 2012-06-25 06:50
1
2,083 by smlewis
Mon, 2014-04-21 06:47
Normal topic jd2 time out error
by ytao » Mon, 2013-03-04 20:47
2
2,088 by ytao
Mon, 2014-04-21 06:47
Normal topic Will Rosetta Flexpepdock be adequate for this for now.?
by monos_morpheus » Wed, 2011-04-27 19:10
1
2,092 by londonir
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel
by berk » Wed, 2013-07-10 11:21
2
2,093 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic activation of filters in rosetta3.0 or later
by exchhattu » Thu, 2009-12-03 17:52
2
2,096 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Energy updates in Rosetta 3.3
by gipsonb » Tue, 2011-10-11 09:58
2
2,096 by gipsonb
Mon, 2014-04-21 06:47
Normal topic Can't read constraint type
by allan.ferrari » Fri, 2015-08-28 12:33
2
2,097 by allan.ferrari
Mon, 2015-09-21 21:54
Normal topic Calibur-linux binary or source code availability?
by jasnyderjr » Sat, 2016-12-10 23:36
2
2,100 by jadolfbr
Sun, 2016-12-11 10:53
Normal topic How to judge docking success for two proteins without knowledge of native structure
by jasnyderjr » Fri, 2015-07-10 14:27
1
2,101 by rmoretti
Tue, 2015-07-14 15:27
Normal topic restricting space in a design
by ast » Tue, 2012-01-17 06:31
2
2,104 by rmoretti
Mon, 2014-04-21 06:47
Normal topic loop file
by banshee » Tue, 2013-06-04 13:26
2
2,104 by banshee
Mon, 2014-04-21 06:48
Normal topic Problem with running turtorial of rna denovo
by myle » Fri, 2017-04-14 09:23
3
2,106 by rmoretti
Tue, 2017-04-18 13:49
Normal topic 3D Structure Prediction
by anirbanzz » Sat, 2010-04-17 02:47
1
2,108 by smlewis
Mon, 2014-04-21 06:47
Normal topic RASREC - finding lowest energy structure
by Lati » Fri, 2015-11-20 03:08
2
2,109 by Lati
Tue, 2016-01-12 13:28
Normal topic Bug in Loop Modeling
by dseelig » Thu, 2010-09-23 05:55
2
2,111 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta-based projects using and licensing
by SergeyP » Fri, 2018-10-26 15:45
3
2,117 by SergeyP
Mon, 2018-11-12 09:19
Normal topic abintio clustering - funnel plot
by vamsi » Fri, 2011-03-25 09:18
1
2,118 by smlewis
Mon, 2014-04-21 06:47
Normal topic could ab initio support running mpi?
by albumns » Mon, 2010-07-05 01:13
1
2,118 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modelling Sheets
by monteirotorres » Thu, 2009-07-02 11:41
2
2,119 by monteirotorres
Mon, 2014-04-21 06:47
Normal topic ligand dock residue selection
by Silice » Wed, 2009-08-12 08:57
2
2,122 by frichter
Mon, 2014-04-21 06:47
Normal topic Does RNA parses checkpoint matrix as well as protein
by qlj » Wed, 2014-03-05 06:03
2
2,127 by qlj
Thu, 2014-03-06 22:20
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
0
2,134 by coxford
Mon, 2014-04-21 06:47
Normal topic RosettaCM density guided rebuilding methodology
by ahmadkhalifa » Thu, 2018-08-30 06:45
4
2,136 by ahmadkhalifa
Thu, 2018-08-30 23:09
Normal topic ​​B​3​-protein design using rosettaScript movers
by straore » Mon, 2015-03-16 05:05
2
2,152 by straore
Fri, 2015-04-17 01:54
Normal topic The -symmetry:perturb_rigid_body_dofs flag
by doranhen » Sat, 2012-04-28 13:01
2
2,152 by doranhen
Mon, 2014-04-21 06:47
Normal topic is there a preferred way to enforce an hydrogen bond ?
by logandonaldson » Wed, 2013-03-20 13:14
2
2,153 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Fluctuations in I_sc
by eminegenetics » Thu, 2018-09-13 12:07
4
2,154 by eminegenetics
Fri, 2018-09-21 07:42
Normal topic Cyclizing .pdb of a linear chain.
by jcminerlanl » Wed, 2017-07-05 23:56
3
2,157 by jcminerlanl
Thu, 2017-07-06 09:22
Normal topic rama energy term and explicit zero
by SergeyP » Sat, 2015-12-19 05:25
2
2,159 by SergeyP
Sun, 2015-12-20 01:44
Normal topic How to prevent rotamers from being pruned from the interaction graph?
by msun » Wed, 2013-04-17 14:19
2
2,160 by smlewis
Mon, 2014-04-21 06:47
Normal topic Run PackRotamersMover on specified rotamer set
by pachecoj » Mon, 2014-11-10 06:51
2
2,161 by pachecoj
Tue, 2014-11-11 19:30
Normal topic Fragment file viewers
by MajorID » Fri, 2012-02-24 20:57
2
2,164 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein-protien docking with uniform trans
by lkingsle » Thu, 2012-02-09 07:19
1
2,165 by mpacella
Mon, 2014-04-21 06:47
Normal topic how same random seeds can be used in rosetta for mpi run.
by exchhattu » Wed, 2009-10-28 22:09
1
2,170 by smlewis
Mon, 2014-04-21 06:47
Normal topic Installing rosetta 3.0
by dalemu » Thu, 2009-09-24 13:28
1
2,172 by smlewis
Mon, 2014-04-21 06:47
Normal topic weird prolines with hydroxyls from fixbb.linuxgccrelease
by louisclark » Wed, 2010-08-25 15:01
2
2,178 by louisclark
Mon, 2014-04-21 06:47
Normal topic error running rosetta3.0
by aschoenr » Wed, 2009-06-10 13:57
1
2,181 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Residue not found in pose
by lzx32 » Fri, 2011-09-09 03:42
1
2,189 by rmoretti
Mon, 2014-04-21 06:47
Normal topic which make_fragments.pl
by renedominik » Mon, 2018-06-04 08:58
2
2,190 by renedominik
Sat, 2018-07-07 03:03
Normal topic make_fragments
by ctaylor » Mon, 2009-09-21 12:41
2
2,193 by ctaylor
Mon, 2014-04-21 06:47
Normal topic Determining Rosetta version from directory
by linucks » Fri, 2014-02-28 04:04
1
2,196 by smlewis
Fri, 2014-02-28 05:45
Normal topic filter score by I_sc and keep top 1000
by aaj » Tue, 2016-01-19 07:13
2
2,196 by aaj
Mon, 2016-02-22 07:43
Normal topic Loop modelling,
by berk » Sat, 2013-06-08 08:29
2
2,196 by berk
Mon, 2014-04-21 06:48
Normal topic all-atom refinement with Relax application
by zwenthor » Mon, 2010-02-15 22:45
2
2,200 by zwenthor
Mon, 2014-04-21 06:47
Normal topic relax - P6G molecule
by allan.ferrari » Wed, 2016-11-30 05:01
3
2,203 by allan.ferrari
Tue, 2017-01-03 05:02
Normal topic make fragments for a loop
by jarod » Mon, 2010-03-15 07:31
2
2,204 by jarod
Mon, 2014-04-21 06:47
Normal topic hydroxyproline patching problem
by aaj » Mon, 2016-02-22 07:33
2
2,204 by aaj
Mon, 2016-02-29 04:45
Normal topic protein ligand docking
by patrickchirdon » Sun, 2018-12-30 15:07
4
2,210 by smlewis
Mon, 2018-12-31 08:58
Normal topic Can't find the source code of FlexPepDock protocol in Rosetta3.1
by SunH » Thu, 2010-09-16 06:28
2
2,213 by barak
Mon, 2014-04-21 06:47
Normal topic Pair potential
by jadolfbr » Thu, 2011-12-08 08:06
1
2,219 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster application, How does it sort decoys by energy?
by Apiwat » Wed, 2014-04-16 01:52
2
2,222 by Apiwat
Thu, 2014-04-17 09:56
Normal topic Histidine phosphorylation by a patch
by felipet » Sat, 2016-07-09 06:51
2
2,224 by felipet
Sat, 2016-07-09 09:50
Normal topic Peptide building
by berk » Thu, 2015-07-30 06:53
2
2,226 by rmoretti
Thu, 2015-08-06 09:21
Normal topic FixBB design design_contrast
by swoody » Tue, 2009-06-30 11:48
2
2,228 by swoody
Mon, 2014-04-21 06:47
Normal topic relax with restraints
by jtmacd » Mon, 2010-11-08 09:11
2
2,228 by jtmacd
Mon, 2014-04-21 06:47
Normal topic selecting pivot_residue in Backrub for ensemble generation
by rohi » Fri, 2020-08-07 15:41
6
2,238 by matteoferla
Tue, 2020-08-11 10:00
Normal topic what is the relationship and difference between Rosetta 3.0 and miniRosetta
by jarod » Thu, 2010-05-06 20:57
2
2,243 by jarod
Mon, 2014-04-21 06:47
Normal topic fixbb design use
by Lindsay » Fri, 2012-03-23 09:05
2
2,246 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Weird results from flexpepdock MPI
by gerdos » Fri, 2016-06-24 01:18
3
2,251 by smlewis
Thu, 2016-06-30 08:44
Normal topic minimum number of nstruct to build at 65% homolgy
by MRH » Thu, 2013-08-22 07:29
2
2,252 by MRH
Mon, 2014-04-21 06:48
Normal topic Molecular oxygen
by matteoferla » Sat, 2018-02-24 06:05
3
2,253 by matteoferla
Mon, 2018-02-26 02:05
Normal topic How to recover out files when run crashs
by samuelrpita » Tue, 2015-07-28 12:54
2
2,253 by samuelrpita
Thu, 2015-08-06 14:23
Normal topic Another request for help with restarts
by jasnyderjr » Tue, 2015-08-18 12:14
2
2,256 by rmoretti
Tue, 2015-08-18 17:11
Normal topic CS-Rosetta fragments
by isengupta13 » Sun, 2010-05-16 08:08
1
2,263 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic Selecting Top Scoring Decoys
by kalabharath » Thu, 2011-10-20 22:08
2
2,268 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RosettaMatch in Rosetta3.2?
by SenyorDrew » Fri, 2010-08-13 07:47
1
2,276 by smlewis
Mon, 2014-04-21 06:47
Normal topic Comparative modelling of dimer
by rt1108 » Fri, 2012-06-15 07:31
1
2,279 by smlewis
Mon, 2014-04-21 06:47
Normal topic Write PDB with multiple side-chain configurations
by pachecoj » Tue, 2014-09-30 21:42
2
2,280 by pachecoj
Thu, 2014-10-09 18:15
Normal topic MET, MSE, and fMET Amino Acids
by ac.research » Sat, 2017-11-18 06:33
1
2,284 by smlewis
Sun, 2017-11-19 20:08
Normal topic Using Relax to asses conformational space
by glapidoth11 » Sat, 2011-07-30 05:09
2
2,287 by smlewis
Mon, 2014-04-21 06:47
Normal topic Checkpoints in Rosetta
by exchhattu » Mon, 2009-10-19 17:47
2
2,288 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Design constraints on pairs of residues
by SenyorDrew » Mon, 2017-10-02 07:25
3
2,288 by SenyorDrew
Mon, 2017-11-13 11:44
Normal topic Symmetric Processing for evaluating side-chain of chi angle
by qlj » Wed, 2012-10-10 04:08
2
2,290 by smlewis
Mon, 2014-04-21 06:47
Normal topic Denovo density corrupted silent file
by ahmadkhalifa » Mon, 2018-04-23 07:30
4
2,294 by ahmadkhalifa
Thu, 2018-04-26 09:11
Normal topic Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3?
by jiongzhang » Fri, 2012-04-20 13:35
2
2,299 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Abinitio Structure Prediction - Sanity Test
by westleys » Tue, 2010-06-01 00:28
2
2,303 by westleys
Mon, 2014-04-21 06:47
Normal topic Can I use the relax mode application for removing clashes in a membrane protein homology model?
by doranhen » Thu, 2012-12-20 05:45
2
2,304 by doranhen
Mon, 2014-04-21 06:47
Normal topic force hydrogen rebuild on input
by jtmacd » Mon, 2013-11-18 08:28
2
2,304 by jtmacd
Mon, 2014-04-21 06:48
Normal topic Building Rosetta 3.1 for cs-Rosetta
by zdn3023 » Fri, 2010-02-26 14:31
2
2,306 by zdn3023
Mon, 2014-04-21 06:47
Normal topic metal_ions formal charge question
by lah435 » Tue, 2015-02-03 09:35
2
2,306 by lah435
Thu, 2015-02-12 09:16
Normal topic ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116
by phanvy » Wed, 2014-10-08 22:28
2
2,310 by phanvy
Wed, 2014-10-15 21:41
Normal topic Cluster Error
by justin » Mon, 2010-04-26 00:06
2
2,313 by justin
Mon, 2014-04-21 06:47
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