You are here
Rosetta 3 - General
Log in to post new content in the forum.
| Topic / Topic starter | Replies |
Views |
Last post | |
|---|---|---|---|---|
|
Cannot create cst files from upl files by road runner » Wed, 2015-11-11 22:07 |
2 |
2,042 |
by road runner Tue, 2015-12-01 10:08 |
|
|
could restta consider the flexibility of backbone duirng protein docking? by albumns » Wed, 2010-11-24 01:00 |
1 |
2,042 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
SnugDock equivalent in newer Rosetta code by SenyorDrew » Tue, 2016-03-29 09:16 |
2 |
2,042 |
by SenyorDrew Wed, 2016-04-06 10:52 |
|
|
Changing Monte Carlo temperature for relax by jruhym » Thu, 2012-02-02 15:18 |
1 |
2,044 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
How to prepare the pdblist file for docking_ensmble in Rosetta3.4 by sunlufinal » Mon, 2015-06-01 19:27 |
1 |
2,045 |
by rmoretti Fri, 2015-07-03 12:58 |
|
|
How to read the output score file from rosetta? by Sunyp_IM » Sun, 2017-08-27 05:29 |
1 |
2,045 |
by rmoretti Mon, 2017-08-28 09:32 |
|
|
no template pdb provided for alignment by HZHANG020 » Sat, 2014-06-14 06:27 |
1 |
2,052 |
by rmoretti Mon, 2014-06-16 08:23 |
|
|
How to generate a symmetry definition file for octahedral symmetry? by Anonymous » Wed, 2012-08-15 05:20 |
0 |
2,054 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
RosettaDesign by ac.research » Sun, 2019-07-21 01:20 |
2 |
2,059 |
by ac.research Sat, 2019-08-03 08:12 |
|
|
Getting started with Rosetta by myang » Tue, 2009-04-07 16:25 |
1 |
2,060 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
constrain files tutorial by knutjbj » Fri, 2011-02-18 23:57 |
2 |
2,065 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
decoy vs pose by Anonymous » Fri, 2012-06-15 02:46 |
1 |
2,067 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Constraining a docking study by jos » Tue, 2011-10-18 05:26 |
2 |
2,069 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Protein-Protein Docking by hwillis » Fri, 2009-08-07 01:31 |
1 |
2,069 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Error in RMSD calculation when native sequence deviates by abdullah » Tue, 2009-11-10 08:56 |
1 |
2,074 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Problem with ClashCountCalculator by masterofpuppets » Wed, 2015-01-07 04:47 |
2 |
2,074 |
by rmoretti Fri, 2015-01-09 10:59 |
|
|
possible idealize app bug - residues being deleted by jtmacd » Mon, 2009-06-08 06:27 |
2 |
2,074 |
by jtmacd Mon, 2014-04-21 06:47 |
|
|
error in cluster running by albumns » Mon, 2011-09-05 00:24 |
1 |
2,082 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
prepack vs. relax with bb_cst by Anonymous » Mon, 2012-06-25 06:50 |
1 |
2,083 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
jd2 time out error by ytao » Mon, 2013-03-04 20:47 |
2 |
2,088 |
by ytao Mon, 2014-04-21 06:47 |
|
|
Will Rosetta Flexpepdock be adequate for this for now.? by monos_morpheus » Wed, 2011-04-27 19:10 |
1 |
2,092 |
by londonir Mon, 2014-04-21 06:47 |
|
|
RosettaRemodel by berk » Wed, 2013-07-10 11:21 |
2 |
2,093 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
activation of filters in rosetta3.0 or later by exchhattu » Thu, 2009-12-03 17:52 |
2 |
2,096 |
by exchhattu Mon, 2014-04-21 06:47 |
|
|
Energy updates in Rosetta 3.3 by gipsonb » Tue, 2011-10-11 09:58 |
2 |
2,096 |
by gipsonb Mon, 2014-04-21 06:47 |
|
|
Can't read constraint type by allan.ferrari » Fri, 2015-08-28 12:33 |
2 |
2,097 |
by allan.ferrari Mon, 2015-09-21 21:54 |
|
|
Calibur-linux binary or source code availability? by jasnyderjr » Sat, 2016-12-10 23:36 |
2 |
2,100 |
by jadolfbr Sun, 2016-12-11 10:53 |
|
|
How to judge docking success for two proteins without knowledge of native structure by jasnyderjr » Fri, 2015-07-10 14:27 |
1 |
2,101 |
by rmoretti Tue, 2015-07-14 15:27 |
|
|
restricting space in a design by ast » Tue, 2012-01-17 06:31 |
2 |
2,104 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
loop file by banshee » Tue, 2013-06-04 13:26 |
2 |
2,104 |
by banshee Mon, 2014-04-21 06:48 |
|
|
Problem with running turtorial of rna denovo by myle » Fri, 2017-04-14 09:23 |
3 |
2,106 |
by rmoretti Tue, 2017-04-18 13:49 |
|
|
3D Structure Prediction by anirbanzz » Sat, 2010-04-17 02:47 |
1 |
2,108 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
RASREC - finding lowest energy structure by Lati » Fri, 2015-11-20 03:08 |
2 |
2,109 |
by Lati Tue, 2016-01-12 13:28 |
|
|
Bug in Loop Modeling by dseelig » Thu, 2010-09-23 05:55 |
2 |
2,111 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Rosetta-based projects using and licensing by SergeyP » Fri, 2018-10-26 15:45 |
3 |
2,117 |
by SergeyP Mon, 2018-11-12 09:19 |
|
|
abintio clustering - funnel plot by vamsi » Fri, 2011-03-25 09:18 |
1 |
2,118 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
could ab initio support running mpi? by albumns » Mon, 2010-07-05 01:13 |
1 |
2,118 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Modelling Sheets by monteirotorres » Thu, 2009-07-02 11:41 |
2 |
2,119 |
by monteirotorres Mon, 2014-04-21 06:47 |
|
|
ligand dock residue selection by Silice » Wed, 2009-08-12 08:57 |
2 |
2,122 |
by frichter Mon, 2014-04-21 06:47 |
|
|
Does RNA parses checkpoint matrix as well as protein by qlj » Wed, 2014-03-05 06:03 |
2 |
2,127 |
by qlj Thu, 2014-03-06 22:20 |
|
|
Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
0 |
2,134 |
by coxford Mon, 2014-04-21 06:47 |
|
|
RosettaCM density guided rebuilding methodology by ahmadkhalifa » Thu, 2018-08-30 06:45 |
4 |
2,136 |
by ahmadkhalifa Thu, 2018-08-30 23:09 |
|
|
B3-protein design using rosettaScript movers by straore » Mon, 2015-03-16 05:05 |
2 |
2,152 |
by straore Fri, 2015-04-17 01:54 |
|
|
The -symmetry:perturb_rigid_body_dofs flag by doranhen » Sat, 2012-04-28 13:01 |
2 |
2,152 |
by doranhen Mon, 2014-04-21 06:47 |
|
|
is there a preferred way to enforce an hydrogen bond ? by logandonaldson » Wed, 2013-03-20 13:14 |
2 |
2,153 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Fluctuations in I_sc by eminegenetics » Thu, 2018-09-13 12:07 |
4 |
2,154 |
by eminegenetics Fri, 2018-09-21 07:42 |
|
|
Cyclizing .pdb of a linear chain. by jcminerlanl » Wed, 2017-07-05 23:56 |
3 |
2,157 |
by jcminerlanl Thu, 2017-07-06 09:22 |
|
|
rama energy term and explicit zero by SergeyP » Sat, 2015-12-19 05:25 |
2 |
2,159 |
by SergeyP Sun, 2015-12-20 01:44 |
|
|
How to prevent rotamers from being pruned from the interaction graph? by msun » Wed, 2013-04-17 14:19 |
2 |
2,160 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Run PackRotamersMover on specified rotamer set by pachecoj » Mon, 2014-11-10 06:51 |
2 |
2,161 |
by pachecoj Tue, 2014-11-11 19:30 |
|
|
Fragment file viewers by MajorID » Fri, 2012-02-24 20:57 |
2 |
2,164 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
protein-protien docking with uniform trans by lkingsle » Thu, 2012-02-09 07:19 |
1 |
2,165 |
by mpacella Mon, 2014-04-21 06:47 |
|
|
how same random seeds can be used in rosetta for mpi run. by exchhattu » Wed, 2009-10-28 22:09 |
1 |
2,170 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Installing rosetta 3.0 by dalemu » Thu, 2009-09-24 13:28 |
1 |
2,172 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
weird prolines with hydroxyls from fixbb.linuxgccrelease by louisclark » Wed, 2010-08-25 15:01 |
2 |
2,178 |
by louisclark Mon, 2014-04-21 06:47 |
|
|
error running rosetta3.0 by aschoenr » Wed, 2009-06-10 13:57 |
1 |
2,181 |
by jtmacd Mon, 2014-04-21 06:47 |
|
|
Residue not found in pose by lzx32 » Fri, 2011-09-09 03:42 |
1 |
2,189 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
which make_fragments.pl by renedominik » Mon, 2018-06-04 08:58 |
2 |
2,190 |
by renedominik Sat, 2018-07-07 03:03 |
|
|
make_fragments by ctaylor » Mon, 2009-09-21 12:41 |
2 |
2,193 |
by ctaylor Mon, 2014-04-21 06:47 |
|
|
Determining Rosetta version from directory by linucks » Fri, 2014-02-28 04:04 |
1 |
2,196 |
by smlewis Fri, 2014-02-28 05:45 |
|
|
filter score by I_sc and keep top 1000 by aaj » Tue, 2016-01-19 07:13 |
2 |
2,196 |
by aaj Mon, 2016-02-22 07:43 |
|
|
Loop modelling, by berk » Sat, 2013-06-08 08:29 |
2 |
2,196 |
by berk Mon, 2014-04-21 06:48 |
|
|
all-atom refinement with Relax application by zwenthor » Mon, 2010-02-15 22:45 |
2 |
2,200 |
by zwenthor Mon, 2014-04-21 06:47 |
|
|
relax - P6G molecule by allan.ferrari » Wed, 2016-11-30 05:01 |
3 |
2,203 |
by allan.ferrari Tue, 2017-01-03 05:02 |
|
|
make fragments for a loop by jarod » Mon, 2010-03-15 07:31 |
2 |
2,204 |
by jarod Mon, 2014-04-21 06:47 |
|
|
hydroxyproline patching problem by aaj » Mon, 2016-02-22 07:33 |
2 |
2,204 |
by aaj Mon, 2016-02-29 04:45 |
|
|
protein ligand docking by patrickchirdon » Sun, 2018-12-30 15:07 |
4 |
2,210 |
by smlewis Mon, 2018-12-31 08:58 |
|
|
Can't find the source code of FlexPepDock protocol in Rosetta3.1 by SunH » Thu, 2010-09-16 06:28 |
2 |
2,213 |
by barak Mon, 2014-04-21 06:47 |
|
|
Pair potential by jadolfbr » Thu, 2011-12-08 08:06 |
1 |
2,219 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Cluster application, How does it sort decoys by energy? by Apiwat » Wed, 2014-04-16 01:52 |
2 |
2,222 |
by Apiwat Thu, 2014-04-17 09:56 |
|
|
Histidine phosphorylation by a patch by felipet » Sat, 2016-07-09 06:51 |
2 |
2,224 |
by felipet Sat, 2016-07-09 09:50 |
|
|
Peptide building by berk » Thu, 2015-07-30 06:53 |
2 |
2,226 |
by rmoretti Thu, 2015-08-06 09:21 |
|
|
FixBB design design_contrast by swoody » Tue, 2009-06-30 11:48 |
2 |
2,228 |
by swoody Mon, 2014-04-21 06:47 |
|
|
relax with restraints by jtmacd » Mon, 2010-11-08 09:11 |
2 |
2,228 |
by jtmacd Mon, 2014-04-21 06:47 |
|
|
selecting pivot_residue in Backrub for ensemble generation by rohi » Fri, 2020-08-07 15:41 |
6 |
2,238 |
by matteoferla Tue, 2020-08-11 10:00 |
|
|
what is the relationship and difference between Rosetta 3.0 and miniRosetta by jarod » Thu, 2010-05-06 20:57 |
2 |
2,243 |
by jarod Mon, 2014-04-21 06:47 |
|
|
fixbb design use by Lindsay » Fri, 2012-03-23 09:05 |
2 |
2,246 |
by Lindsay Mon, 2014-04-21 06:47 |
|
|
Weird results from flexpepdock MPI by gerdos » Fri, 2016-06-24 01:18 |
3 |
2,251 |
by smlewis Thu, 2016-06-30 08:44 |
|
|
minimum number of nstruct to build at 65% homolgy by MRH » Thu, 2013-08-22 07:29 |
2 |
2,252 |
by MRH Mon, 2014-04-21 06:48 |
|
|
Molecular oxygen by matteoferla » Sat, 2018-02-24 06:05 |
3 |
2,253 |
by matteoferla Mon, 2018-02-26 02:05 |
|
|
How to recover out files when run crashs by samuelrpita » Tue, 2015-07-28 12:54 |
2 |
2,253 |
by samuelrpita Thu, 2015-08-06 14:23 |
|
|
Another request for help with restarts by jasnyderjr » Tue, 2015-08-18 12:14 |
2 |
2,256 |
by rmoretti Tue, 2015-08-18 17:11 |
|
|
CS-Rosetta fragments by isengupta13 » Sun, 2010-05-16 08:08 |
1 |
2,263 |
by AndrewBworth Mon, 2014-04-21 06:47 |
|
|
Selecting Top Scoring Decoys by kalabharath » Thu, 2011-10-20 22:08 |
2 |
2,268 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
RosettaMatch in Rosetta3.2? by SenyorDrew » Fri, 2010-08-13 07:47 |
1 |
2,276 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Comparative modelling of dimer by rt1108 » Fri, 2012-06-15 07:31 |
1 |
2,279 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Write PDB with multiple side-chain configurations by pachecoj » Tue, 2014-09-30 21:42 |
2 |
2,280 |
by pachecoj Thu, 2014-10-09 18:15 |
|
|
MET, MSE, and fMET Amino Acids by ac.research » Sat, 2017-11-18 06:33 |
1 |
2,284 |
by smlewis Sun, 2017-11-19 20:08 |
|
|
Using Relax to asses conformational space by glapidoth11 » Sat, 2011-07-30 05:09 |
2 |
2,287 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Checkpoints in Rosetta by exchhattu » Mon, 2009-10-19 17:47 |
2 |
2,288 |
by exchhattu Mon, 2014-04-21 06:47 |
|
|
Design constraints on pairs of residues by SenyorDrew » Mon, 2017-10-02 07:25 |
3 |
2,288 |
by SenyorDrew Mon, 2017-11-13 11:44 |
|
|
Symmetric Processing for evaluating side-chain of chi angle by qlj » Wed, 2012-10-10 04:08 |
2 |
2,290 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Denovo density corrupted silent file by ahmadkhalifa » Mon, 2018-04-23 07:30 |
4 |
2,294 |
by ahmadkhalifa Thu, 2018-04-26 09:11 |
|
|
Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3? by jiongzhang » Fri, 2012-04-20 13:35 |
2 |
2,299 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Abinitio Structure Prediction - Sanity Test by westleys » Tue, 2010-06-01 00:28 |
2 |
2,303 |
by westleys Mon, 2014-04-21 06:47 |
|
|
Can I use the relax mode application for removing clashes in a membrane protein homology model? by doranhen » Thu, 2012-12-20 05:45 |
2 |
2,304 |
by doranhen Mon, 2014-04-21 06:47 |
|
|
force hydrogen rebuild on input by jtmacd » Mon, 2013-11-18 08:28 |
2 |
2,304 |
by jtmacd Mon, 2014-04-21 06:48 |
|
|
Building Rosetta 3.1 for cs-Rosetta by zdn3023 » Fri, 2010-02-26 14:31 |
2 |
2,306 |
by zdn3023 Mon, 2014-04-21 06:47 |
|
|
metal_ions formal charge question by lah435 » Tue, 2015-02-03 09:35 |
2 |
2,306 |
by lah435 Thu, 2015-02-12 09:16 |
|
|
ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116 by phanvy » Wed, 2014-10-08 22:28 |
2 |
2,310 |
by phanvy Wed, 2014-10-15 21:41 |
|
|
Cluster Error by justin » Mon, 2010-04-26 00:06 |
2 |
2,313 |
by justin Mon, 2014-04-21 06:47 |
Log in to post new content in the forum.
