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Rosetta 3 - General

Topic / Topic starter Replies Viewssort descending Last post
Normal topic how to add constrains in flexible peptide docking
by kingbo2008 » Fri, 2011-04-29 07:55
1
2,106 by smlewis
Mon, 2014-04-21 06:47
Normal topic MoveMap file for backrub
by jiyongpark.77 » Sat, 2009-07-18 03:53
1
2,107 by smlewis
Mon, 2014-04-21 06:47
Normal topic where do new .params files go?
by einew » Wed, 2011-01-05 12:09
1
2,107 by smlewis
Mon, 2014-04-21 06:47
Normal topic All possible mutations
by abdullah_ahmed » Tue, 2011-01-04 02:11
1
2,109 by smlewis
Mon, 2014-04-21 06:47
Normal topic Propagating the same mutation over "different" chains
by mdeklotz » Thu, 2018-07-26 09:27
3
2,113 by rmoretti
Fri, 2018-08-03 08:42
Normal topic scorefunction Talaris2013
by dave » Tue, 2015-03-03 02:13
1
2,115 by rmoretti
Thu, 2015-04-02 12:52
Normal topic Minimizing across jumps
by SenyorDrew » Thu, 2017-07-06 06:26
2
2,120 by SenyorDrew
Thu, 2017-07-06 07:48
Normal topic start pose and native pose don't match in lengh
by zhisheng » Thu, 2011-12-15 10:23
1
2,129 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generate full symmetric assembly from subsystem
by lj269 » Thu, 2011-04-28 20:04
1
2,132 by IAndre
Mon, 2014-04-21 06:47
Normal topic pdb 2 silent with ss information
by kalabharath » Sun, 2013-04-14 20:59
1
2,134 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to score the crystal structure?
by vsjasion » Fri, 2011-11-18 15:49
1
2,134 by rmoretti
Mon, 2014-04-21 06:47
Normal topic About Rosetta Scoring Function
by wszjzhang » Wed, 2010-02-03 09:22
1
2,142 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Tue, 2016-01-05 09:39
1
2,145 by achambe
Wed, 2016-01-13 10:46
Normal topic Is it possible to use two broker files
by kalabharath » Wed, 2011-06-08 01:01
1
2,147 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaHoles in 3.1
by enoee » Thu, 2010-10-14 07:12
1
2,148 by smlewis
Mon, 2014-04-21 06:47
Normal topic Read svn acces or acces to developmen version of rosetta
by knutjbj » Thu, 2010-12-09 17:06
1
2,148 by smlewis
Mon, 2014-04-21 06:47
Normal topic What is the different between dun08 and default dunbrack library?
by SunH » Mon, 2010-11-08 06:14
1
2,148 by smlewis
Mon, 2014-04-21 06:47
Normal topic Adding centroid .params files for non-canonical residues based on all-atom .params files
by jcminerlanl » Thu, 2017-04-27 09:28
2
2,158 by vmulligan
Thu, 2017-04-27 16:41
Normal topic Using NCAAs in protocols with native heme proteins
by htorres » Wed, 2018-01-24 08:32
2
2,159 by htorres
Mon, 2018-02-05 06:53
Normal topic Rosetta membrane prediction!
by wtscrystal » Tue, 2009-11-17 05:55
0
2,160 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic Is the Fold&Dock protocol availabe in Rosetta3.1
by justin » Mon, 2011-01-17 02:41
2
2,161 by smlewis
Mon, 2014-04-21 06:47
Normal topic Possible documentation error
by imurch » Tue, 2012-04-17 00:11
1
2,161 by Anonymous
Mon, 2014-04-21 06:47
Normal topic ERROR: filtered_alignments.size() > 0
by jhbrown » Tue, 2012-01-17 13:28
2
2,168 by jhbrown
Mon, 2014-04-21 06:47
Normal topic Chain specific flags
by helenah » Mon, 2020-10-19 03:31
5
2,174 by rmoretti
Fri, 2020-11-06 08:04
Normal topic How to transform a pose from symmetric into non-symmetric?
by msardejani » Tue, 2016-10-04 16:55
2
2,175 by msardejani
Wed, 2016-10-05 10:53
Normal topic ddG average energy
by dave » Wed, 2013-04-03 03:36
1
2,176 by rmoretti
Mon, 2014-04-21 06:47
Normal topic -RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application?
by Karol » Thu, 2016-05-12 06:30
2
2,185 by Karol
Thu, 2016-05-12 07:58
Normal topic angle constraints
by gw » Tue, 2011-07-19 07:49
1
2,185 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to site the scoring application in rosetta3.1?
by doranhen » Thu, 2012-07-05 10:07
1
2,187 by smlewis
Mon, 2014-04-21 06:47
Normal topic can not find a residue type that matches the residue HIS_P:NtermProteinFull
by tarsis » Wed, 2017-04-05 08:51
1
2,188 by rmoretti
Fri, 2017-04-14 08:37
Normal topic mode=release compile on a mac-pro , seg faults and bus errors
by dnasmith » Thu, 2010-09-09 16:56
2
2,191 by dnasmith
Mon, 2014-04-21 06:47
Normal topic packing option "explicit_h2o" and "solvate"
by SunH » Wed, 2010-11-17 00:03
1
2,194 by smlewis
Mon, 2014-04-21 06:47
Normal topic backbone-independent density
by SergeyP » Sun, 2016-03-20 04:57
2
2,195 by SergeyP
Thu, 2016-05-05 02:07
Normal topic runtime error
by exchhattu » Wed, 2010-03-03 02:54
2
2,197 by exchhattu
Mon, 2014-04-21 06:47
Normal topic "unrecognized aa ACT"
by einew » Sat, 2011-08-27 14:58
1
2,198 by smlewis
Mon, 2014-04-21 06:47
Normal topic Refinement of a PDB structure containing multiple models
by ahmadkhalifa » Wed, 2018-04-18 07:44
3
2,203 by smlewis
Wed, 2018-04-18 19:03
Normal topic could restta consider the flexibility of backbone duirng protein docking?
by albumns » Wed, 2010-11-24 01:00
1
2,205 by smlewis
Mon, 2014-04-21 06:47
Normal topic harmonic_Calphas in RosettaLigand flags.txt
by cpkuntz » Wed, 2010-07-14 08:57
2
2,205 by smlewis
Mon, 2014-04-21 06:47
Normal topic build local user guide
by coomteng@gmail.com » Wed, 2018-03-28 13:55
3
2,208 by coomteng@gmail.com
Wed, 2018-03-28 14:58
Normal topic general question about protein docking
by albumns » Mon, 2010-12-13 23:26
1
2,209 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Using a broker file with relax
by Al52 » Mon, 2015-11-30 20:24
2
2,210 by Al52
Tue, 2015-12-01 18:22
Normal topic Jump::random_trans strange behavior
by SergeyP » Tue, 2015-11-03 07:56
2
2,216 by SergeyP
Sat, 2015-12-19 05:20
Normal topic problem parsing a THR residue
by decrSTL » Wed, 2019-08-21 12:25
4
2,216 by decrSTL
Tue, 2019-08-27 10:24
Normal topic Can rosetta model cyclic peptide?
by Apiwat » Fri, 2014-02-07 02:08
1
2,216 by rmoretti
Tue, 2014-02-11 06:24
Normal topic Snugdock and antibody modelling
by sudhar » Thu, 2010-06-10 08:13
1
2,218 by smlewis
Mon, 2014-04-21 06:47
Normal topic Intel Compiler and OS X Intel
by bene » Tue, 2009-10-20 10:20
1
2,220 by smlewis
Mon, 2014-04-21 06:47
Normal topic problems with cluster program
by umeshghosh » Thu, 2010-04-08 07:45
1
2,226 by smlewis
Mon, 2014-04-21 06:47
Normal topic Predict the N-terminal of a protein
by aliaselin » Mon, 2010-11-08 03:23
2
2,229 by smlewis
Mon, 2014-04-21 06:47
Normal topic generating 10 lowest energy structures from abinitio
by isengupta13 » Fri, 2010-05-07 11:44
2
2,239 by ndousis
Mon, 2014-04-21 06:47
Normal topic Changing Monte Carlo temperature for relax
by jruhym » Thu, 2012-02-02 15:18
1
2,240 by rmoretti
Mon, 2014-04-21 06:47
Normal topic the problem in making fragments
by croshong » Thu, 2009-12-03 17:15
1
2,243 by smlewis
Mon, 2014-04-21 06:47
Normal topic [dev] determine which score_type's enabled in create_energy_method?
by ipetrik_ambry » Fri, 2017-10-27 15:37
3
2,246 by rmoretti
Mon, 2017-10-30 12:02
Normal topic scoring with omega energy term
by SergeyP » Thu, 2017-03-09 12:03
2
2,247 by SergeyP
Fri, 2017-03-10 11:16
Normal topic Rosetta lack of necessary application
by ylwang » Wed, 2018-11-07 01:13
3
2,247 by rmoretti
Wed, 2018-11-21 13:50
Normal topic Evaluate Docking Result
by byin » Thu, 2014-07-03 11:31
1
2,251 by rmoretti
Wed, 2014-07-16 08:07
Normal topic Score Differences between Ab Initio Scoring and Rescore
by mmarlett » Wed, 2016-06-15 09:14
2
2,255 by mmarlett
Thu, 2016-06-16 07:06
Normal topic How to generate a symmetry definition file for octahedral symmetry?
by Anonymous » Wed, 2012-08-15 05:20
0
2,261 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Dumb question: Rosetta 3 vs Rosetta++, what's the difference?
by mintseris » Tue, 2013-12-31 13:03
1
2,261 by rmoretti
Mon, 2014-04-21 06:48
Normal topic input secondary structure prediction to AbinitioRelax
by biofisikx » Mon, 2010-08-09 12:36
2
2,263 by biofisikx
Mon, 2014-04-21 06:47
Normal topic how to relax structure constraining CA in Rosetta3.2?
by albumns » Tue, 2011-02-15 06:15
2
2,268 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ab initio structure prediction for long amino acid sequence
by maruhuang » Fri, 2019-08-02 03:38
4
2,271 by maruhuang
Thu, 2019-09-26 18:55
Normal topic AtomTree::torsion_angle() can't find dof! in match and enzdes
by petrikigor » Fri, 2012-10-19 09:49
1
2,272 by rmoretti
Mon, 2014-04-21 06:47
Normal topic how to docking including HETATM
by tricia » Tue, 2009-05-05 22:03
1
2,274 by smlewis
Mon, 2014-04-21 06:47
Normal topic Will Rosetta Flexpepdock be adequate for this for now.?
by monos_morpheus » Wed, 2011-04-27 19:10
1
2,277 by londonir
Mon, 2014-04-21 06:47
Normal topic Different weights in the constraints for each stage of AbinitioRelax
by allan.ferrari » Sun, 2017-01-15 04:35
2
2,279 by smlewis
Sun, 2017-01-15 18:10
Normal topic I generated a table of images & info of the premade NCAA params in the database
by matteoferla » Sun, 2020-02-16 06:27
4
2,282 by matteoferla
Sat, 2020-03-21 09:14
Normal topic docking mover(s) in rosetta
by aaj » Mon, 2016-01-25 02:38
2
2,285 by aaj
Mon, 2016-02-22 07:50
Normal topic Problem with outputing decoys in the process of AbinitioRelax
by MA » Thu, 2017-07-13 23:27
3
2,289 by rmoretti
Thu, 2017-08-03 08:50
Normal topic error in cluster running
by albumns » Mon, 2011-09-05 00:24
1
2,290 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Running time of Rosetta/FlexPepDock
by gerdos » Thu, 2015-10-15 02:14
2
2,291 by gerdos
Fri, 2015-10-16 03:01
Normal topic Getting started with Rosetta
by myang » Tue, 2009-04-07 16:25
1
2,292 by smlewis
Mon, 2014-04-21 06:47
Normal topic Seasons greetings with a Christmas tree shaped protein
by matteoferla » Sun, 2019-12-22 03:37
4
2,295 by matteoferla
Mon, 2019-12-23 07:24
Normal topic no template pdb provided for alignment
by HZHANG020 » Sat, 2014-06-14 06:27
1
2,297 by rmoretti
Mon, 2014-06-16 08:23
Normal topic Constraining a docking study
by jos » Tue, 2011-10-18 05:26
2
2,298 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Denovo density didn't output a structure
by ahmadkhalifa » Mon, 2018-02-12 08:10
3
2,299 by ylwang
Wed, 2018-11-14 03:03
Normal topic prepack vs. relax with bb_cst
by Anonymous » Mon, 2012-06-25 06:50
1
2,299 by smlewis
Mon, 2014-04-21 06:47
Normal topic Protein-Protein Docking
by hwillis » Fri, 2009-08-07 01:31
1
2,301 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error in RMSD calculation when native sequence deviates
by abdullah » Tue, 2009-11-10 08:56
1
2,315 by smlewis
Mon, 2014-04-21 06:47
Normal topic Chi values for side chains when switching from centroid mode
by MarkW » Fri, 2015-07-03 04:43
2
2,319 by MarkW
Fri, 2015-07-03 15:36
Normal topic Questions on energy oddities
by pachecoj » Wed, 2014-10-15 13:26
2
2,325 by pachecoj
Wed, 2014-10-15 15:12
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
0
2,327 by coxford
Mon, 2014-04-21 06:47
Normal topic Intermediate file insertion
by exchhattu » Wed, 2009-09-02 18:44
2
2,330 by exchhattu
Mon, 2014-04-21 06:47
Normal topic SnugDock equivalent in newer Rosetta code
by SenyorDrew » Tue, 2016-03-29 09:16
2
2,331 by SenyorDrew
Wed, 2016-04-06 10:52
Normal topic Peripheral membrane protein modeling
by Fukiishi » Tue, 2018-10-02 02:09
3
2,332 by matteoferla
Thu, 2018-10-04 01:30
Normal topic InterfaceAnalyzer atom subset
by Parker.deWaal » Sun, 2016-03-13 13:41
2
2,336 by rmoretti
Mon, 2016-03-14 07:58
Normal topic constrain files tutorial
by knutjbj » Fri, 2011-02-18 23:57
2
2,338 by smlewis
Mon, 2014-04-21 06:47
Normal topic InterfaceAnalyzer total score = 0.000
by vmc99 » Wed, 2019-06-12 14:06
3
2,339 by jadolfbr
Wed, 2019-06-12 20:17
Normal topic Fragments for short peptides using Robetta
by renedominik » Wed, 2018-05-16 14:21
3
2,340 by renedominik
Mon, 2018-06-04 00:04
Normal topic Number of conformations needed
by JadAbbass » Sun, 2014-02-16 13:21
2
2,340 by JadAbbass
Tue, 2014-02-18 07:27
Normal topic Errors in Interface design  
by Kazu » Thu, 2019-10-31 17:48
4
2,341 by Kazu
Mon, 2020-05-18 10:52
Normal topic jd2 time out error
by ytao » Mon, 2013-03-04 20:47
2
2,343 by ytao
Mon, 2014-04-21 06:47
Normal topic Energy updates in Rosetta 3.3
by gipsonb » Tue, 2011-10-11 09:58
2
2,344 by gipsonb
Mon, 2014-04-21 06:47
Normal topic could ab initio support running mpi?
by albumns » Mon, 2010-07-05 01:13
1
2,347 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cannot create cst files from upl files
by road runner » Wed, 2015-11-11 22:07
2
2,349 by road runner
Tue, 2015-12-01 10:08
Normal topic restricting space in a design
by ast » Tue, 2012-01-17 06:31
2
2,349 by rmoretti
Mon, 2014-04-21 06:47
Normal topic abintio clustering - funnel plot
by vamsi » Fri, 2011-03-25 09:18
1
2,352 by smlewis
Mon, 2014-04-21 06:47
Normal topic Bug in Loop Modeling
by dseelig » Thu, 2010-09-23 05:55
2
2,352 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to judge docking success for two proteins without knowledge of native structure
by jasnyderjr » Fri, 2015-07-10 14:27
1
2,354 by rmoretti
Tue, 2015-07-14 15:27
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
by sunlufinal » Mon, 2015-06-01 19:27
1
2,355 by rmoretti
Fri, 2015-07-03 12:58
Normal topic Problem with ClashCountCalculator
by masterofpuppets » Wed, 2015-01-07 04:47
2
2,355 by rmoretti
Fri, 2015-01-09 10:59
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