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Rosetta 3 - General
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how to add constrains in flexible peptide docking by kingbo2008 » Fri, 2011-04-29 07:55 |
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2,106 |
by smlewis Mon, 2014-04-21 06:47 |
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MoveMap file for backrub by jiyongpark.77 » Sat, 2009-07-18 03:53 |
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2,107 |
by smlewis Mon, 2014-04-21 06:47 |
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where do new .params files go? by einew » Wed, 2011-01-05 12:09 |
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2,107 |
by smlewis Mon, 2014-04-21 06:47 |
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All possible mutations by abdullah_ahmed » Tue, 2011-01-04 02:11 |
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2,109 |
by smlewis Mon, 2014-04-21 06:47 |
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Propagating the same mutation over "different" chains by mdeklotz » Thu, 2018-07-26 09:27 |
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2,113 |
by rmoretti Fri, 2018-08-03 08:42 |
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scorefunction Talaris2013 by dave » Tue, 2015-03-03 02:13 |
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2,115 |
by rmoretti Thu, 2015-04-02 12:52 |
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Minimizing across jumps by SenyorDrew » Thu, 2017-07-06 06:26 |
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2,120 |
by SenyorDrew Thu, 2017-07-06 07:48 |
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start pose and native pose don't match in lengh by zhisheng » Thu, 2011-12-15 10:23 |
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2,129 |
by smlewis Mon, 2014-04-21 06:47 |
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Generate full symmetric assembly from subsystem by lj269 » Thu, 2011-04-28 20:04 |
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2,132 |
by IAndre Mon, 2014-04-21 06:47 |
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pdb 2 silent with ss information by kalabharath » Sun, 2013-04-14 20:59 |
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2,134 |
by smlewis Mon, 2014-04-21 06:47 |
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How to score the crystal structure? by vsjasion » Fri, 2011-11-18 15:49 |
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2,134 |
by rmoretti Mon, 2014-04-21 06:47 |
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About Rosetta Scoring Function by wszjzhang » Wed, 2010-02-03 09:22 |
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2,142 |
by smlewis Mon, 2014-04-21 06:47 |
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Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Tue, 2016-01-05 09:39 |
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2,145 |
by achambe Wed, 2016-01-13 10:46 |
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Is it possible to use two broker files by kalabharath » Wed, 2011-06-08 01:01 |
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2,147 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaHoles in 3.1 by enoee » Thu, 2010-10-14 07:12 |
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2,148 |
by smlewis Mon, 2014-04-21 06:47 |
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Read svn acces or acces to developmen version of rosetta by knutjbj » Thu, 2010-12-09 17:06 |
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2,148 |
by smlewis Mon, 2014-04-21 06:47 |
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What is the different between dun08 and default dunbrack library? by SunH » Mon, 2010-11-08 06:14 |
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2,148 |
by smlewis Mon, 2014-04-21 06:47 |
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Adding centroid .params files for non-canonical residues based on all-atom .params files by jcminerlanl » Thu, 2017-04-27 09:28 |
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2,158 |
by vmulligan Thu, 2017-04-27 16:41 |
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Using NCAAs in protocols with native heme proteins by htorres » Wed, 2018-01-24 08:32 |
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2,159 |
by htorres Mon, 2018-02-05 06:53 |
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Rosetta membrane prediction! by wtscrystal » Tue, 2009-11-17 05:55 |
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2,160 |
by wtscrystal Mon, 2014-04-21 06:47 |
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Is the Fold&Dock protocol availabe in Rosetta3.1 by justin » Mon, 2011-01-17 02:41 |
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2,161 |
by smlewis Mon, 2014-04-21 06:47 |
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Possible documentation error by imurch » Tue, 2012-04-17 00:11 |
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2,161 |
by Anonymous Mon, 2014-04-21 06:47 |
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ERROR: filtered_alignments.size() > 0 by jhbrown » Tue, 2012-01-17 13:28 |
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2,168 |
by jhbrown Mon, 2014-04-21 06:47 |
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Chain specific flags by helenah » Mon, 2020-10-19 03:31 |
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2,174 |
by rmoretti Fri, 2020-11-06 08:04 |
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How to transform a pose from symmetric into non-symmetric? by msardejani » Tue, 2016-10-04 16:55 |
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2,175 |
by msardejani Wed, 2016-10-05 10:53 |
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ddG average energy by dave » Wed, 2013-04-03 03:36 |
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2,176 |
by rmoretti Mon, 2014-04-21 06:47 |
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-RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application? by Karol » Thu, 2016-05-12 06:30 |
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2,185 |
by Karol Thu, 2016-05-12 07:58 |
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angle constraints by gw » Tue, 2011-07-19 07:49 |
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2,185 |
by smlewis Mon, 2014-04-21 06:47 |
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How to site the scoring application in rosetta3.1? by doranhen » Thu, 2012-07-05 10:07 |
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2,187 |
by smlewis Mon, 2014-04-21 06:47 |
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can not find a residue type that matches the residue HIS_P:NtermProteinFull by tarsis » Wed, 2017-04-05 08:51 |
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2,188 |
by rmoretti Fri, 2017-04-14 08:37 |
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mode=release compile on a mac-pro , seg faults and bus errors by dnasmith » Thu, 2010-09-09 16:56 |
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2,191 |
by dnasmith Mon, 2014-04-21 06:47 |
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packing option "explicit_h2o" and "solvate" by SunH » Wed, 2010-11-17 00:03 |
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2,194 |
by smlewis Mon, 2014-04-21 06:47 |
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backbone-independent density by SergeyP » Sun, 2016-03-20 04:57 |
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2,195 |
by SergeyP Thu, 2016-05-05 02:07 |
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runtime error by exchhattu » Wed, 2010-03-03 02:54 |
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2,197 |
by exchhattu Mon, 2014-04-21 06:47 |
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"unrecognized aa ACT" by einew » Sat, 2011-08-27 14:58 |
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2,198 |
by smlewis Mon, 2014-04-21 06:47 |
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Refinement of a PDB structure containing multiple models by ahmadkhalifa » Wed, 2018-04-18 07:44 |
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2,203 |
by smlewis Wed, 2018-04-18 19:03 |
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could restta consider the flexibility of backbone duirng protein docking? by albumns » Wed, 2010-11-24 01:00 |
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2,205 |
by smlewis Mon, 2014-04-21 06:47 |
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harmonic_Calphas in RosettaLigand flags.txt by cpkuntz » Wed, 2010-07-14 08:57 |
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2,205 |
by smlewis Mon, 2014-04-21 06:47 |
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build local user guide by coomteng@gmail.com » Wed, 2018-03-28 13:55 |
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2,208 |
by coomteng@gmail.com Wed, 2018-03-28 14:58 |
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general question about protein docking by albumns » Mon, 2010-12-13 23:26 |
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2,209 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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Using a broker file with relax by Al52 » Mon, 2015-11-30 20:24 |
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2,210 |
by Al52 Tue, 2015-12-01 18:22 |
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Jump::random_trans strange behavior by SergeyP » Tue, 2015-11-03 07:56 |
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2,216 |
by SergeyP Sat, 2015-12-19 05:20 |
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problem parsing a THR residue by decrSTL » Wed, 2019-08-21 12:25 |
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2,216 |
by decrSTL Tue, 2019-08-27 10:24 |
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Can rosetta model cyclic peptide? by Apiwat » Fri, 2014-02-07 02:08 |
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2,216 |
by rmoretti Tue, 2014-02-11 06:24 |
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Snugdock and antibody modelling by sudhar » Thu, 2010-06-10 08:13 |
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2,218 |
by smlewis Mon, 2014-04-21 06:47 |
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Intel Compiler and OS X Intel by bene » Tue, 2009-10-20 10:20 |
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2,220 |
by smlewis Mon, 2014-04-21 06:47 |
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problems with cluster program by umeshghosh » Thu, 2010-04-08 07:45 |
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2,226 |
by smlewis Mon, 2014-04-21 06:47 |
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Predict the N-terminal of a protein by aliaselin » Mon, 2010-11-08 03:23 |
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2,229 |
by smlewis Mon, 2014-04-21 06:47 |
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generating 10 lowest energy structures from abinitio by isengupta13 » Fri, 2010-05-07 11:44 |
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2,239 |
by ndousis Mon, 2014-04-21 06:47 |
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Changing Monte Carlo temperature for relax by jruhym » Thu, 2012-02-02 15:18 |
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2,240 |
by rmoretti Mon, 2014-04-21 06:47 |
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the problem in making fragments by croshong » Thu, 2009-12-03 17:15 |
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2,243 |
by smlewis Mon, 2014-04-21 06:47 |
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[dev] determine which score_type's enabled in create_energy_method? by ipetrik_ambry » Fri, 2017-10-27 15:37 |
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2,246 |
by rmoretti Mon, 2017-10-30 12:02 |
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scoring with omega energy term by SergeyP » Thu, 2017-03-09 12:03 |
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2,247 |
by SergeyP Fri, 2017-03-10 11:16 |
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Rosetta lack of necessary application by ylwang » Wed, 2018-11-07 01:13 |
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2,247 |
by rmoretti Wed, 2018-11-21 13:50 |
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Evaluate Docking Result by byin » Thu, 2014-07-03 11:31 |
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2,251 |
by rmoretti Wed, 2014-07-16 08:07 |
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Score Differences between Ab Initio Scoring and Rescore by mmarlett » Wed, 2016-06-15 09:14 |
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2,255 |
by mmarlett Thu, 2016-06-16 07:06 |
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How to generate a symmetry definition file for octahedral symmetry? by Anonymous » Wed, 2012-08-15 05:20 |
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2,261 |
by Anonymous Mon, 2014-04-21 06:47 |
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Dumb question: Rosetta 3 vs Rosetta++, what's the difference? by mintseris » Tue, 2013-12-31 13:03 |
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2,261 |
by rmoretti Mon, 2014-04-21 06:48 |
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input secondary structure prediction to AbinitioRelax by biofisikx » Mon, 2010-08-09 12:36 |
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2,263 |
by biofisikx Mon, 2014-04-21 06:47 |
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how to relax structure constraining CA in Rosetta3.2? by albumns » Tue, 2011-02-15 06:15 |
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2,268 |
by smlewis Mon, 2014-04-21 06:47 |
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Ab initio structure prediction for long amino acid sequence by maruhuang » Fri, 2019-08-02 03:38 |
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2,271 |
by maruhuang Thu, 2019-09-26 18:55 |
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AtomTree::torsion_angle() can't find dof! in match and enzdes by petrikigor » Fri, 2012-10-19 09:49 |
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2,272 |
by rmoretti Mon, 2014-04-21 06:47 |
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how to docking including HETATM by tricia » Tue, 2009-05-05 22:03 |
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2,274 |
by smlewis Mon, 2014-04-21 06:47 |
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Will Rosetta Flexpepdock be adequate for this for now.? by monos_morpheus » Wed, 2011-04-27 19:10 |
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2,277 |
by londonir Mon, 2014-04-21 06:47 |
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Different weights in the constraints for each stage of AbinitioRelax by allan.ferrari » Sun, 2017-01-15 04:35 |
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2,279 |
by smlewis Sun, 2017-01-15 18:10 |
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I generated a table of images & info of the premade NCAA params in the database by matteoferla » Sun, 2020-02-16 06:27 |
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2,282 |
by matteoferla Sat, 2020-03-21 09:14 |
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docking mover(s) in rosetta by aaj » Mon, 2016-01-25 02:38 |
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2,285 |
by aaj Mon, 2016-02-22 07:50 |
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Problem with outputing decoys in the process of AbinitioRelax by MA » Thu, 2017-07-13 23:27 |
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2,289 |
by rmoretti Thu, 2017-08-03 08:50 |
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error in cluster running by albumns » Mon, 2011-09-05 00:24 |
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2,290 |
by rmoretti Mon, 2014-04-21 06:47 |
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Running time of Rosetta/FlexPepDock by gerdos » Thu, 2015-10-15 02:14 |
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2,291 |
by gerdos Fri, 2015-10-16 03:01 |
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Getting started with Rosetta by myang » Tue, 2009-04-07 16:25 |
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2,292 |
by smlewis Mon, 2014-04-21 06:47 |
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Seasons greetings with a Christmas tree shaped protein by matteoferla » Sun, 2019-12-22 03:37 |
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2,295 |
by matteoferla Mon, 2019-12-23 07:24 |
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no template pdb provided for alignment by HZHANG020 » Sat, 2014-06-14 06:27 |
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2,297 |
by rmoretti Mon, 2014-06-16 08:23 |
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Constraining a docking study by jos » Tue, 2011-10-18 05:26 |
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2,298 |
by rmoretti Mon, 2014-04-21 06:47 |
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Denovo density didn't output a structure by ahmadkhalifa » Mon, 2018-02-12 08:10 |
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2,299 |
by ylwang Wed, 2018-11-14 03:03 |
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prepack vs. relax with bb_cst by Anonymous » Mon, 2012-06-25 06:50 |
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2,299 |
by smlewis Mon, 2014-04-21 06:47 |
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Protein-Protein Docking by hwillis » Fri, 2009-08-07 01:31 |
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2,301 |
by smlewis Mon, 2014-04-21 06:47 |
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Error in RMSD calculation when native sequence deviates by abdullah » Tue, 2009-11-10 08:56 |
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2,315 |
by smlewis Mon, 2014-04-21 06:47 |
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Chi values for side chains when switching from centroid mode by MarkW » Fri, 2015-07-03 04:43 |
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2,319 |
by MarkW Fri, 2015-07-03 15:36 |
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Questions on energy oddities by pachecoj » Wed, 2014-10-15 13:26 |
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2,325 |
by pachecoj Wed, 2014-10-15 15:12 |
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Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
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2,327 |
by coxford Mon, 2014-04-21 06:47 |
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Intermediate file insertion by exchhattu » Wed, 2009-09-02 18:44 |
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2,330 |
by exchhattu Mon, 2014-04-21 06:47 |
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SnugDock equivalent in newer Rosetta code by SenyorDrew » Tue, 2016-03-29 09:16 |
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2,331 |
by SenyorDrew Wed, 2016-04-06 10:52 |
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Peripheral membrane protein modeling by Fukiishi » Tue, 2018-10-02 02:09 |
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2,332 |
by matteoferla Thu, 2018-10-04 01:30 |
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InterfaceAnalyzer atom subset by Parker.deWaal » Sun, 2016-03-13 13:41 |
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2,336 |
by rmoretti Mon, 2016-03-14 07:58 |
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constrain files tutorial by knutjbj » Fri, 2011-02-18 23:57 |
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2,338 |
by smlewis Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer total score = 0.000 by vmc99 » Wed, 2019-06-12 14:06 |
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2,339 |
by jadolfbr Wed, 2019-06-12 20:17 |
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Fragments for short peptides using Robetta by renedominik » Wed, 2018-05-16 14:21 |
3 |
2,340 |
by renedominik Mon, 2018-06-04 00:04 |
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Number of conformations needed by JadAbbass » Sun, 2014-02-16 13:21 |
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2,340 |
by JadAbbass Tue, 2014-02-18 07:27 |
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Errors in Interface design by Kazu » Thu, 2019-10-31 17:48 |
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2,341 |
by Kazu Mon, 2020-05-18 10:52 |
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jd2 time out error by ytao » Mon, 2013-03-04 20:47 |
2 |
2,343 |
by ytao Mon, 2014-04-21 06:47 |
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Energy updates in Rosetta 3.3 by gipsonb » Tue, 2011-10-11 09:58 |
2 |
2,344 |
by gipsonb Mon, 2014-04-21 06:47 |
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could ab initio support running mpi? by albumns » Mon, 2010-07-05 01:13 |
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2,347 |
by smlewis Mon, 2014-04-21 06:47 |
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Cannot create cst files from upl files by road runner » Wed, 2015-11-11 22:07 |
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2,349 |
by road runner Tue, 2015-12-01 10:08 |
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restricting space in a design by ast » Tue, 2012-01-17 06:31 |
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2,349 |
by rmoretti Mon, 2014-04-21 06:47 |
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abintio clustering - funnel plot by vamsi » Fri, 2011-03-25 09:18 |
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2,352 |
by smlewis Mon, 2014-04-21 06:47 |
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Bug in Loop Modeling by dseelig » Thu, 2010-09-23 05:55 |
2 |
2,352 |
by smlewis Mon, 2014-04-21 06:47 |
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How to judge docking success for two proteins without knowledge of native structure by jasnyderjr » Fri, 2015-07-10 14:27 |
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2,354 |
by rmoretti Tue, 2015-07-14 15:27 |
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How to prepare the pdblist file for docking_ensmble in Rosetta3.4 by sunlufinal » Mon, 2015-06-01 19:27 |
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2,355 |
by rmoretti Fri, 2015-07-03 12:58 |
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Problem with ClashCountCalculator by masterofpuppets » Wed, 2015-01-07 04:47 |
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2,355 |
by rmoretti Fri, 2015-01-09 10:59 |
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