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Compilation

Building 3.4 on Debian Linux 7.8 (wheezy) using g++ 4.7.2

Category: 
Compilation

I get the following error that terminals the build process:

src/protocols/jd2/SingleFileBuffer.cc:148:13: error: 'sleep' was not declared in this scope

It would appear that for this system "sleep" is found in the <unistd.h> include file.

Anybody else had this problem ?

Or is this a "dead" issue since 3.4 will not be getting any more updates ?

Post Situation: 

Using "make_project.py all" omits "basic.dylib" from link binary with libraries in Xcode 6

Category: 
Compilation

Hello.

Just switched to a new Macbook pro that came with Yosemite and Xcode 6. I downloaded rosetta_bin_mac_2015.02.57538_bundle.

While trying to run "make_project.py all", I had to copy the version.py into the "main/source/xcode" directory from the "main/source" directory.

Starting up Xcode and opening the project, some modules (like basic) compiled with no problems. However, when it tries to compile core.1 (and other targets), I get the following error:

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cannot find -lcr Rosetta3.5 installation

Category: 
Compilation

Dear 'Rosettaers',
I'd tried to compile the Rosetta3.5 on my Server[1] and I couldn't. I tried to compile Rosetta using this command: scons bin mode=release -j 24 extras=mpi,static cxx_ver=4.6 cxx=gcc After a few minutes of compilation the error came and it is following:

Post Situation: 

Access to latest CS-ROSETTA tools

Category: 
Compilation
Structure prediction
Fragment Generation

Have been trying to access the latest CS-ROSETTA tools without success for several days. Looks like www.csrosetta.org has been down for a while.

Any alternative to www.csrosetta.org to access latest cs-rosetta tools?

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Can anyone become a Rosetta developer?

Category: 
Compilation

Rosetta's end-user documentation is very poor. I think that if I studied the source code of some applications, I could understand better how they work. However, studying the source code of a large project such as Rosetta requires a lot of help. I'm guessing that the Rosetta's developer resources (listed here: https://www.rosettacommons.org/dev) would help, but that requires a password (ex., https://wiki.rosettacommons.org/). How do you get this password?

Post Situation: 

Empty bin after compilation

Category: 
Compilation

Dear Rosetta Users,

I downloaded the most recent release rosetta2014.52 and compiled the source code on a Linux 64 bit machine with the command: ./scons.py -j4 mode=release bin. The compilation seemed successful as I saw the "scons: done building targets" message. But the bin/ was empty though the build/src contains newly generated files. Looking at the log file, I found these lines:

Post Situation: 

Combine flags file with command line arguments?

Category: 
Compilation
Structure prediction
Docking
Design
Scoring
Enzyme Design
Loop Modeling
Constraints
Symmetry
Small Molecules
Chemically Modified Residues
Fragment Generation
Membrane
Non-Canonical Peptides
Nucleic Acids
Phenix / MR Rosetta

Is it possible to combine a flags file with command line arguments?

For example, something like this:

minimize_with_cst.linuxgccrelease -in:file:l min_pdb_file_list @flags_file

where flags_file contains additional options. Moreover, what is the effect of changing the order of command line arguments and flags files? Which takes precedence? That is, what is the difference between the above command and:

minimize_with_cst.linuxgccrelease @flags_file -in:file:l min_pdb_file_list

Thanks.

Post Situation: 

Error MPI build rosetta2014.35 on Ubuntu14.04 LTS

Category: 
Compilation

Hello!

Recently, I posted some post about install Rosetta3.5 on cygwin.

Finally, I changed the OS and succeeded to install them on the Ubuntu on Virtual box(Win7)
Normal install was good. and docking protocol was worked(I only checked that exe).
./scons.py -j4 mode=release bin

But,I couldn't MPI install by follow command in another new Virtual machine. The first one hour from the beginning was good but I got some error.
I did all command as superuser

Post Situation: 

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