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how to generate _prepro.rama file for a customized beta-amino acid residues?

Category: 
Non-Canonical Peptides

how to generate _prepro.rama file for a customized beta-amino acid residues? I wish to generate a customized beta-amino acid residue for design applications.

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question about antibody modeling and snugdock process option

Category: 
Docking

I am currently working on a simple test with antibodies.

I have a question in this regard, can I use deepab instead of rosetta antibody to create antibody structures? When I looked at the snugdock paper, it seems that there is an additional protocol when using a tool other than rosetta antibody, but I know that deepab creates structures based on rosetta. So I am wondering if I can proceed in the same way as rosetta antibody when using deepab. 

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error in loop remodeling

Category: 
Loop Modeling

 

Hi I'm trying to fill the missing loop with remodel.linuxgccrelease in rosetta

for some pdb, there's no problem in filling missing loop

but I got following error with certain PDB

core.fragment.picking_old.vall.vall_io: Added 62471 sections to library totaling 1400124 residues.
core.fragment.picking_old.vall.eval.IdentityEval: ss = LLLLLLL  |  aa = .......
core.fragment.picking_old.vall.eval.ABEGOEval: abego = LLLLLLL
core.sequence.ABEGOManager: [ ERROR ] Unrecognized abego index: L

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Error with residue selectors not counting indices correctly.

Category: 
Design

I have a 4 chain, 96 residues long PDB file. all four chains are identical, so I set up my rosettascript with the following indices to select each chain to mutate them.

<Index name="chain1" resnums="1-24"/>

<Index name="chain2" resnums="24-48"/>

<Index name="chain3" resnums="48-72"/>

<Index name="chain4" resnums="72-96"/>

However I get the follwoing error message when running this script: 

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Fork Rosetta for commercial license

Category: 
Compilation

Hello,

My name is Or and I'm new to this forum so I appologise if my query is trivial or if this is not the right sub forum or category.

I work as a software developer at a company that uses Rosetta, we have a commertial licence. Sometimes, we change the CPP code, for example to add a new mover. 

We wish to create an inner github repo of Rosetta to keep track of our own changes.

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