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Rosetta 3 - Applications

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Normal topic Using Rosetta Docking for nucleic acids
by Adrien Guilhot » Thu, 2011-04-28 06:16
3
5,273 by Adrien Guilhot
Mon, 2014-04-21 06:47
Normal topic "Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application
by xfliu » Thu, 2012-06-21 09:07
4
5,285 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddG_monomer
by cott1117 » Thu, 2014-06-12 09:53
3
5,288 by rmoretti
Wed, 2014-07-02 16:55
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
5
5,292 by tsztain
Tue, 2018-12-11 13:41
Normal topic make fragment
by zadie1118 » Thu, 2012-08-30 07:45
3
5,339 by smlewis
Mon, 2014-04-21 06:47
Normal topic Backrub Params Files
by protos_heis » Tue, 2012-09-18 06:15
4
5,342 by protos_heis
Mon, 2014-04-21 06:47
Normal topic Why is proline hydroxylated?
by kwonglynn » Tue, 2013-06-25 02:38
3
5,364 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Is there a way to restrict memory usage of ddg_monomer?
by cossio » Fri, 2015-01-30 14:35
5
5,386 by rmoretti
Mon, 2015-02-09 12:04
Normal topic Loop modelling before peptide docking
by wsgosal » Tue, 2013-10-01 07:24
4
5,415 by wsgosal
Mon, 2014-04-21 06:48
Normal topic how to do alanine scanning
by xinmiaohe » Mon, 2019-08-26 17:40
5
5,419 by xinmiaohe
Fri, 2019-10-04 08:54
Normal topic running in MPI mode and multiple scores per output PDB file?
by dantimatter » Wed, 2019-10-30 09:42
7
5,440 by dantimatter
Wed, 2019-11-06 09:51
Normal topic Rebuilding the structure from unknown residues
by sushreet » Mon, 2016-06-27 09:32
4
5,446 by rmoretti
Tue, 2016-07-12 09:35
Normal topic Error during single state design
by sujigeorge1979 » Sat, 2020-01-18 00:37
5
5,456 by rmoretti
Thu, 2020-01-30 15:42
Normal topic enzyme design and output_matchres_only
by petrikigor » Wed, 2012-10-24 18:45
6
5,463 by petrikigor
Mon, 2014-04-21 06:47
Normal topic fixbb algorithm reference?
by tylerborrman » Wed, 2015-09-23 10:20
4
5,467 by tylerborrman
Mon, 2015-09-28 09:30
Normal topic Multiple ligands in enzyme design application
by yogeshkd » Mon, 2013-02-11 10:13
4
5,482 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic Docking flags
by AmelieH » Thu, 2014-11-13 08:46
5
5,524 by AmelieH
Wed, 2014-11-19 11:26
Normal topic Does linker modeling exist?
by aroop » Wed, 2012-02-22 07:34
5
5,525 by smlewis
Mon, 2014-04-21 06:47
Normal topic Standalone alanine scanning protocol
by exchhattu » Thu, 2011-10-13 19:40
1
5,529 by smlewis
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax with native fragments
by ks » Mon, 2016-09-05 03:03
5
5,556 by ks
Mon, 2016-09-12 03:14
Normal topic How do you use two patches simulataneously with ab initio folding?
by smiruthi » Wed, 2011-12-21 15:24
5
5,563 by wangyr
Mon, 2014-04-21 06:47
Normal topic H3 modeling takes 10 days more?
by jessye » Fri, 2017-10-27 03:11
7
5,573 by jessye
Fri, 2017-11-03 20:15
Normal topic score_jd2.mpi.linuxgccrelease failed
by fred » Wed, 2014-03-26 13:54
2
5,581 by fred
Tue, 2014-04-01 08:24
Normal topic Adding bridged water interaction in constraint file
by purvi24 » Thu, 2019-02-28 07:01
8
5,589 by purvi24
Mon, 2019-03-11 06:43
Normal topic SymDock for docking only the ligand?
by ast » Mon, 2013-06-17 09:53
4
5,593 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Unable to run Rosetta LoopModeling application
by BDBorrillo » Tue, 2011-07-19 14:06
2
5,610 by BDBorrillo
Mon, 2014-04-21 06:47
Normal topic fixbb with symmetry error
by Prasanth Kumar » Sun, 2014-01-26 10:56
4
5,637 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic How to estimate the effect of a mutation on the binding energy?
by ltrabuco » Tue, 2011-02-15 08:02
4
5,659 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Rosetta relax problem
by jingwei xu » Wed, 2016-03-09 21:41
2
5,689 by jingwei xu
Wed, 2016-05-04 23:28
Normal topic domain:domain fusion
by felipet » Thu, 2017-06-15 13:13
5
5,718 by felipet
Fri, 2017-06-16 11:42
Normal topic Error while reading in silent file
by rweisse » Mon, 2015-04-20 00:31
4
5,726 by rmoretti
Thu, 2015-04-30 16:46
Normal topic using Rosetta to compute pH dependent binding?
by JuliusSu » Sun, 2014-06-15 20:28
3
5,726 by rmoretti
Tue, 2014-06-17 08:51
Normal topic Multistate design on Rosetta - no generations produced
by tong » Wed, 2018-06-13 00:36
8
5,754 by smlewis
Thu, 2018-06-14 10:26
Normal topic How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"?
by lanselibai » Mon, 2014-10-13 10:26
5
5,763 by lanselibai
Wed, 2014-10-15 03:52
Normal topic -score_app:linmin flag not working
by fglaser » Tue, 2011-03-01 06:04
5
5,775 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg with ligands
by bhaines1 » Mon, 2011-12-05 14:32
4
5,775 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Sequence design with mixed fixbb-relax protocol
by kszczepaniak » Thu, 2013-10-03 08:11
4
5,807 by fede
Wed, 2020-09-23 11:24
Normal topic Over-docking with FlexPepDock
by gw » Fri, 2012-07-20 13:10
5
5,839 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Symmetry definition for coiled-coil dimer and trimer
by kszczepaniak » Fri, 2013-10-11 05:33
2
5,847 by kszczepaniak
Mon, 2014-04-21 06:48
Normal topic ddg_monomer and membrane proteins
by afmo » Tue, 2014-05-20 02:37
4
5,884 by afmo
Thu, 2014-05-22 01:19
Normal topic flexpep docking problem
by michael_luntan » Mon, 2011-04-18 17:15
5
5,889 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic Cartesian-space refinement
by sjyang7 » Wed, 2017-05-31 19:34
5
5,890 by sjyang7
Sat, 2017-06-03 06:09
Normal topic std::bad_alloc error after changing .xml script?
by chrisHKL » Wed, 2020-03-04 11:44
10
5,937 by jadolfbr
Thu, 2020-03-05 07:02
Normal topic homology modelling with DNA
by zadie1118 » Fri, 2012-09-28 06:35
4
5,938 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Problem readin .ccp4 map file
by jljbbc » Tue, 2011-05-03 11:29
4
5,947 by jljbbc
Mon, 2014-04-21 06:47
Normal topic ab initio protein prediction using homologs
by justin » Mon, 2012-02-13 07:52
5
5,951 by justin
Mon, 2014-04-21 06:47
Normal topic Relax with protein+complex
by Prasanth Kumar » Wed, 2013-05-08 23:16
4
5,967 by Prasanth Kumar
Mon, 2014-04-21 06:47
Normal topic Abinitio.relax problem on centos
by krlitros87 » Wed, 2014-09-24 11:27
4
5,981 by jadolfbr
Tue, 2014-10-07 16:05
Normal topic RosettaLigand: How to score native pose in protein-ligand docking experiment?
by Ryhon Wang » Tue, 2015-11-10 01:30
5
5,982 by Ryhon Wang
Mon, 2016-01-04 19:59
Normal topic RNA structure prediction
by emaghdam » Sat, 2014-02-08 01:30
4
6,025 by rmoretti
Mon, 2014-02-24 09:12
Normal topic Problem with hotspot constraints.
by jarek » Wed, 2012-10-17 03:22
6
6,033 by xfliu
Mon, 2014-04-21 06:47
Normal topic extract_pdb application parse error with silent file
by staciekim » Tue, 2017-08-22 12:39
5
6,037 by rmoretti
Thu, 2017-08-24 08:19
Normal topic Abinitio doesn't run but does not give output or error
by Irving » Fri, 2016-10-28 10:04
6
6,045 by rmoretti
Mon, 2017-01-23 08:52
Normal topic Up to date Vall database
by JadAbbass » Sat, 2013-06-29 10:35
3
6,052 by rmoretti
Tue, 2017-06-20 09:02
Normal topic Pmut_scan with symmetry
by felipet » Thu, 2015-02-05 08:53
5
6,063 by felipet
Wed, 2015-02-11 05:13
Normal topic rna structure prediction
by cbala » Thu, 2011-04-14 07:42
5
6,067 by mkoohim
Mon, 2014-04-21 06:47
Normal topic score to use for picking top docking solutions?
by sudhar » Tue, 2011-06-14 06:47
3
6,071 by weitzner
Mon, 2014-04-21 06:47
Normal topic Error src/core/scoring/MembraneTopology.cc line: 139
by Daniel Hall » Thu, 2017-07-13 04:58
6
6,173 by rmoretti
Tue, 2017-07-18 09:00
Normal topic loop modeling during enzyme design?
by lzx32 » Wed, 2011-11-16 00:30
6
6,222 by lzx32
Mon, 2014-04-21 06:47
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
5
6,237 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Line search failed even after resetting Hessian
by Loki01 » Wed, 2017-12-13 16:52
6
6,242 by Loki01
Thu, 2018-02-15 13:54
Normal topic rosetta.script segmentation fault
by felipet » Wed, 2013-10-02 10:41
4
6,254 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic docking in rosetta 3.3
by Ammu » Thu, 2012-03-15 12:03
6
6,283 by smlewis
Mon, 2014-04-21 06:47
Normal topic scoring of beta sandwich protein
by attesor » Mon, 2014-11-17 08:24
6
6,296 by rmoretti
Thu, 2014-11-20 10:46
Normal topic Enzdes: increase weight of energy term for steric clashes with ligand
by eyong123 » Wed, 2015-03-25 09:12
5
6,298 by rmoretti
Fri, 2015-04-24 12:02
Normal topic SnugDocking a VHH:antigen complex possible?
by David Weis » Thu, 2017-02-16 05:57
7
6,298 by rmoretti
Thu, 2017-07-06 13:00
Normal topic too many constraints result in no output pose
by Yao Wu » Sun, 2012-11-18 23:45
5
6,305 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rotamers used in fixbb
by lanselibai » Thu, 2014-11-06 02:47
6
6,338 by lanselibai
Tue, 2014-11-11 15:28
Normal topic Steric clashes in RNA minimization
by brianmlee » Tue, 2014-11-18 18:29
5
6,341 by brianmlee
Mon, 2014-11-24 19:40
Normal topic relax with resfile
by gw » Fri, 2011-08-05 10:57
3
6,344 by nannemdp
Mon, 2014-04-21 06:47
Normal topic protein docking failed
by albumns » Thu, 2012-11-08 02:59
6
6,381 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddg dG_separate
by gw » Wed, 2012-08-22 11:25
5
6,390 by smlewis
Mon, 2014-04-21 06:47
Normal topic Converting -patch replonly residues to original sequence
by subha » Mon, 2017-06-26 13:39
8
6,418 by smlewis
Tue, 2017-07-04 15:42
Normal topic symmetric design in the presence of a nonsymmetric ligand
by msardejani » Fri, 2016-09-30 15:17
6
6,425 by msardejani
Sat, 2016-10-01 12:55
Normal topic Segmentation Fault
by ajaniharesh » Fri, 2019-03-29 11:21
4
6,452 by ajaniharesh
Thu, 2019-04-04 07:07
Normal topic flexpep docking problem-----How to do with phosphorylation peptide?
by MajorID » Thu, 2011-06-02 00:37
4
6,471 by rmoretti
Mon, 2014-04-21 06:47
Normal topic matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302
by siciliu » Fri, 2014-03-21 17:51
5
6,492 by siciliu
Thu, 2014-04-10 09:50
Normal topic Antibody protocol: unusual antibodies, and chainbreaks
by Cyril Cros » Mon, 2014-07-21 17:03
5
6,492 by Cyril Cros
Tue, 2014-11-25 08:21
Normal topic Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database
by Corvin » Tue, 2019-10-01 02:04
6
6,496 by Corvin
Tue, 2019-10-15 01:12
Normal topic Comparative modeling stops with "no more batches to process... " / no output
by eskici » Tue, 2012-08-28 12:13
6
6,501 by eskici
Mon, 2014-04-21 06:47
Normal topic ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used?
by lanselibai » Tue, 2015-02-24 02:38
4
6,514 by lanselibai
Sun, 2015-03-01 15:00
Normal topic ndruns and nstruct in fixbb
by Anonymous » Tue, 2012-08-07 01:52
5
6,534 by Anonymous
Mon, 2014-04-21 06:47
Normal topic ddg_monomer consumes massive RAM
by cossio » Fri, 2018-03-09 17:02
7
6,587 by rmoretti
Mon, 2018-03-19 12:12
Normal topic deltaG calculations
by Prasanth Kumar » Wed, 2013-05-15 07:06
3
6,598 by rmoretti
Mon, 2014-04-21 06:47
Normal topic PDB format for RosettaDNA
by brspurri » Thu, 2013-05-30 11:21
5
6,634 by brspurri
Mon, 2014-04-21 06:47
Normal topic the flexpepdock refinement and ab-initio
by tfliu » Mon, 2013-12-23 19:17
6
6,635 by tfliu
Mon, 2014-04-21 06:48
Normal topic Relax a structure with >1 copy of a modified residue fails [Solved]
by franfdez » Wed, 2012-02-08 00:47
6
6,662 by franfdez
Mon, 2014-04-21 06:47
Normal topic FloppyTail :How to specify range of design(mutation)
by syoifczeri » Mon, 2015-11-02 04:14
6
6,695 by syoifczeri
Sat, 2015-11-07 21:42
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
7
6,709 by matteoferla
Mon, 2021-07-19 06:13
Normal topic ERROR: Unable to fill in missing atoms.
by mieczyslaw » Tue, 2020-10-20 09:43
7
6,756 by rayyoung
Thu, 2021-11-18 10:13
Normal topic Results of enzyme_design not consistent with Resfile
by yogeshkd » Thu, 2013-02-14 15:56
6
6,764 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic Help with enzyme design
by lzx32 » Fri, 2011-04-08 22:29
6
6,777 by lzx32
Mon, 2014-04-21 06:47
Normal topic RosettaVIP: ERROR: seqpos <= size()
by Anonymous » Thu, 2012-07-26 07:30
5
6,779 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Write one's own constraint type
by djpittdj » Thu, 2012-11-08 12:29
7
6,898 by smlewis
Mon, 2014-04-21 06:47
Normal topic the ddg of mutant is same as the wt
by deepanshuiitb » Wed, 2015-03-04 11:56
6
6,932 by jadolfbr
Tue, 2015-04-07 10:50
Normal topic ddg_monomer: what is the meaning of "total score" and "score"?
by lanselibai » Tue, 2015-01-13 14:49
4
7,007 by rmoretti
Thu, 2015-04-16 11:23
Normal topic RosettaLigand - strange score behavior
by Gerdes » Mon, 2014-02-03 02:24
6
7,136 by Gerdes
Fri, 2014-02-07 06:48
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Sun, 2011-02-13 20:34
7
7,153 by yarovoy
Mon, 2014-04-21 06:47
Normal topic extract silent error - tag mismatch
by shrutikhare » Thu, 2014-04-03 00:13
5
7,161 by rmoretti
Mon, 2014-04-21 10:47
Hot topic CoupledMoves not altering backbone coordinates?
by amorin » Wed, 2021-01-20 11:38
15
7,179 by amorin
Sat, 2021-02-27 20:29
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