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Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic Pmut_scan with symmetry
by felipet » Thu, 2015-02-05 08:53
5
5,226 by felipet
Wed, 2015-02-11 05:13
Normal topic RNA structure prediction
by emaghdam » Sat, 2014-02-08 01:30
4
5,238 by rmoretti
Mon, 2014-02-24 09:12
Normal topic ddg_monomer and membrane proteins
by afmo » Tue, 2014-05-20 02:37
4
5,244 by afmo
Thu, 2014-05-22 01:19
Normal topic Converting -patch replonly residues to original sequence
by subha » Mon, 2017-06-26 13:39
8
5,281 by smlewis
Tue, 2017-07-04 15:42
Normal topic SnugDocking a VHH:antigen complex possible?
by David Weis » Thu, 2017-02-16 05:57
7
5,291 by rmoretti
Thu, 2017-07-06 13:00
Normal topic homology modelling with DNA
by zadie1118 » Fri, 2012-09-28 06:35
4
5,298 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Up to date Vall database
by JadAbbass » Sat, 2013-06-29 10:35
3
5,300 by rmoretti
Tue, 2017-06-20 09:02
Normal topic loop modeling during enzyme design?
by lzx32 » Wed, 2011-11-16 00:30
6
5,306 by lzx32
Mon, 2014-04-21 06:47
Normal topic rna structure prediction
by cbala » Thu, 2011-04-14 07:42
5
5,307 by mkoohim
Mon, 2014-04-21 06:47
Normal topic Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database
by Corvin » Tue, 2019-10-01 02:04
6
5,309 by Corvin
Tue, 2019-10-15 01:12
Normal topic Abinitio.relax problem on centos
by krlitros87 » Wed, 2014-09-24 11:27
4
5,339 by jadolfbr
Tue, 2014-10-07 16:05
Normal topic ddg_monomer consumes massive RAM
by cossio » Fri, 2018-03-09 17:02
7
5,348 by rmoretti
Mon, 2018-03-19 12:12
Normal topic InterfaceAnalyzer:“too many tries in fill_missing_atoms!”
by mxp » Tue, 2019-08-06 00:41
8
5,353 by mxp
Mon, 2019-08-12 18:42
Normal topic scoring of beta sandwich protein
by attesor » Mon, 2014-11-17 08:24
6
5,368 by rmoretti
Thu, 2014-11-20 10:46
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
7
5,407 by matteoferla
Mon, 2021-07-19 06:13
Normal topic score to use for picking top docking solutions?
by sudhar » Tue, 2011-06-14 06:47
3
5,409 by weitzner
Mon, 2014-04-21 06:47
Normal topic Symmetry definition for coiled-coil dimer and trimer
by kszczepaniak » Fri, 2013-10-11 05:33
2
5,421 by kszczepaniak
Mon, 2014-04-21 06:48
Normal topic symmetric design in the presence of a nonsymmetric ligand
by msardejani » Fri, 2016-09-30 15:17
6
5,428 by msardejani
Sat, 2016-10-01 12:55
Normal topic Rotamers used in fixbb
by lanselibai » Thu, 2014-11-06 02:47
6
5,473 by lanselibai
Tue, 2014-11-11 15:28
Normal topic docking in rosetta 3.3
by Ammu » Thu, 2012-03-15 12:03
6
5,485 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg dG_separate
by gw » Wed, 2012-08-22 11:25
5
5,491 by smlewis
Mon, 2014-04-21 06:47
Normal topic Enzdes: increase weight of energy term for steric clashes with ligand
by eyong123 » Wed, 2015-03-25 09:12
5
5,497 by rmoretti
Fri, 2015-04-24 12:02
Normal topic Steric clashes in RNA minimization
by brianmlee » Tue, 2014-11-18 18:29
5
5,518 by brianmlee
Mon, 2014-11-24 19:40
Normal topic Antibody protocol: unusual antibodies, and chainbreaks
by Cyril Cros » Mon, 2014-07-21 17:03
5
5,522 by Cyril Cros
Tue, 2014-11-25 08:21
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
5
5,533 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic protein docking failed
by albumns » Thu, 2012-11-08 02:59
6
5,610 by rmoretti
Mon, 2014-04-21 06:47
Normal topic rosetta.script segmentation fault
by felipet » Wed, 2013-10-02 10:41
4
5,620 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic too many constraints result in no output pose
by Yao Wu » Sun, 2012-11-18 23:45
5
5,632 by smlewis
Mon, 2014-04-21 06:47
Normal topic matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302
by siciliu » Fri, 2014-03-21 17:51
5
5,643 by siciliu
Thu, 2014-04-10 09:50
Normal topic relax with resfile
by gw » Fri, 2011-08-05 10:57
3
5,663 by nannemdp
Mon, 2014-04-21 06:47
Normal topic ndruns and nstruct in fixbb
by Anonymous » Tue, 2012-08-07 01:52
5
5,720 by Anonymous
Mon, 2014-04-21 06:47
Normal topic SEWING and motif file generation
by rbjacob » Thu, 2018-07-12 07:28
10
5,736 by zhangying1990
Tue, 2019-06-04 18:04
Normal topic Comparative modeling stops with "no more batches to process... " / no output
by eskici » Tue, 2012-08-28 12:13
6
5,761 by eskici
Mon, 2014-04-21 06:47
Normal topic flexpep docking problem-----How to do with phosphorylation peptide?
by MajorID » Thu, 2011-06-02 00:37
4
5,767 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used?
by lanselibai » Tue, 2015-02-24 02:38
4
5,772 by lanselibai
Sun, 2015-03-01 15:00
Normal topic FloppyTail :How to specify range of design(mutation)
by syoifczeri » Mon, 2015-11-02 04:14
6
5,823 by syoifczeri
Sat, 2015-11-07 21:42
Normal topic the flexpepdock refinement and ab-initio
by tfliu » Mon, 2013-12-23 19:17
6
5,846 by tfliu
Mon, 2014-04-21 06:48
Normal topic Help with enzyme design
by lzx32 » Fri, 2011-04-08 22:29
6
5,860 by lzx32
Mon, 2014-04-21 06:47
Normal topic how to fix the ATP HETATM by using movemap or constraint file?
by ziqi1234 » Mon, 2017-11-20 06:43
9
5,890 by ziqi1234
Wed, 2017-11-22 06:21
Normal topic deltaG calculations
by Prasanth Kumar » Wed, 2013-05-15 07:06
3
5,892 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Relax a structure with >1 copy of a modified residue fails [Solved]
by franfdez » Wed, 2012-02-08 00:47
6
5,919 by franfdez
Mon, 2014-04-21 06:47
Normal topic Problems with ligand when running RosettaLigand
by Cat » Mon, 2013-05-20 15:58
6
5,922 by Aben
Tue, 2023-04-18 01:31
Normal topic PDB format for RosettaDNA
by brspurri » Thu, 2013-05-30 11:21
5
5,957 by brspurri
Mon, 2014-04-21 06:47
Normal topic Results of enzyme_design not consistent with Resfile
by yogeshkd » Thu, 2013-02-14 15:56
6
5,996 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic RosettaVIP: ERROR: seqpos <= size()
by Anonymous » Thu, 2012-07-26 07:30
5
6,008 by Anonymous
Mon, 2014-04-21 06:47
Normal topic the ddg of mutant is same as the wt
by deepanshuiitb » Wed, 2015-03-04 11:56
6
6,059 by jadolfbr
Tue, 2015-04-07 10:50
Normal topic Write one's own constraint type
by djpittdj » Thu, 2012-11-08 12:29
7
6,063 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Sun, 2011-02-13 20:34
7
6,162 by yarovoy
Mon, 2014-04-21 06:47
Normal topic SnugDock - What protocol should I use?
by dfcoelho » Tue, 2018-11-27 07:32
8
6,229 by dfcoelho
Wed, 2018-11-28 08:07
Normal topic RosettaLigand - strange score behavior
by Gerdes » Mon, 2014-02-03 02:24
6
6,230 by Gerdes
Fri, 2014-02-07 06:48
Normal topic ddg_monomer: what is the meaning of "total score" and "score"?
by lanselibai » Tue, 2015-01-13 14:49
4
6,240 by rmoretti
Thu, 2015-04-16 11:23
Normal topic Rosetta dock irmsd
by Pernille » Sun, 2015-04-26 13:51
5
6,248 by rmoretti
Mon, 2015-10-12 15:10
Normal topic variable length fragments for Ab initio
by attesor » Wed, 2015-07-01 06:13
7
6,254 by rmoretti
Tue, 2015-08-18 16:47
Normal topic fix the left part doesn't work
by albumns » Wed, 2012-11-07 00:02
9
6,320 by albumns
Mon, 2014-04-21 06:47
Normal topic suppress pdb output from backrub
by attesor » Mon, 2014-10-27 11:16
7
6,337 by rmoretti
Mon, 2014-11-03 15:47
Normal topic Noncanonical amino acids
by wsgosal » Tue, 2014-03-18 05:29
8
6,394 by e3lm
Thu, 2022-05-26 12:51
Normal topic rosetta protein protein docking start up
by vk » Fri, 2011-06-24 09:01
5
6,401 by smlewis
Mon, 2014-04-21 06:47
Normal topic extract silent error - tag mismatch
by shrutikhare » Thu, 2014-04-03 00:13
5
6,402 by rmoretti
Mon, 2014-04-21 10:47
Normal topic If "clustering.py" can be used for PDBs contain two chains?
by lanselibai » Wed, 2014-11-05 06:05
7
6,424 by lanselibai
Tue, 2014-12-02 09:43
Normal topic P-P docking with suitable constraint type
by Yao Wu » Tue, 2012-11-13 18:03
5
6,431 by rmoretti
Mon, 2014-04-21 06:47
Normal topic where is pdb2vall.py
by tevang » Thu, 2013-01-24 13:35
7
6,452 by dktest
Mon, 2014-04-21 06:47
Normal topic CS-HM-Rosetta
by pwurm » Thu, 2013-03-07 12:56
6
6,480 by Marius1987
Fri, 2016-02-05 07:20
Normal topic ab inito memberane(error in alignblast.pl)
by kingljy » Tue, 2011-05-03 23:41
6
6,499 by karthishanmugam
Mon, 2014-04-21 06:47
Normal topic Enzyme design with variable CST blocks possible?
by petrikigor » Thu, 2011-10-06 11:24
6
6,509 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Enzdes score file discrepancy between generated pdb and scores.out
by eyong123 » Wed, 2015-03-25 08:52
6
6,525 by eyong123
Mon, 2015-06-29 04:44
Normal topic Dimer of dimers
by smiruthi » Fri, 2011-04-15 10:41
4
6,533 by IAndre
Mon, 2014-04-21 06:47
Normal topic How to find cluster core structure?
by assignfit » Thu, 2012-03-29 20:35
7
6,568 by attesor
Wed, 2017-06-14 07:32
Normal topic Using MoveMap within Relax Application?
by m_grisewood » Mon, 2012-08-13 12:21
5
6,571 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic Conformers in EnzDes
by JorickF » Fri, 2015-03-06 04:41
5
6,579 by rmoretti
Tue, 2015-03-31 08:56
Normal topic ligand docking, how to combine some silent.out files into a silent_all.out file
by Ryhon Wang » Fri, 2013-12-06 01:53
6
6,628 by rmoretti
Wed, 2017-01-11 12:53
Normal topic analysis of clustering
by loris.moretti » Thu, 2012-04-19 02:52
3
6,637 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RosettaCM Biological Assembly
by jrcf » Mon, 2015-10-26 11:01
5
6,733 by rmoretti
Tue, 2015-11-24 15:30
Normal topic Including waters in RosettaCM
by ajkal » Thu, 2017-04-27 11:59
9
6,762 by rpavlov
Tue, 2017-06-06 11:45
Normal topic Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading
by Corvin » Tue, 2020-06-30 00:36
12
6,794 by Corvin
Tue, 2020-11-10 01:22
Normal topic Abinitio Relax Error from -kill_hairpins
by attesor » Tue, 2014-10-28 05:33
7
6,810 by rmoretti
Tue, 2014-11-04 10:28
Normal topic problem creating lips4 file using run_lips.pl
by adva » Sun, 2015-02-15 06:22
5
6,845 by linucks
Mon, 2016-06-20 12:02
Normal topic About scorefunction.
by Run » Mon, 2013-09-09 23:08
7
6,846 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaRemodel can not work now?
by myputer » Tue, 2013-08-13 16:56
7
6,871 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Abinitio (3.4) Error: no fragment to compute secondary structure
by skovacs » Tue, 2012-09-18 13:49
6
6,892 by skovacs
Mon, 2014-04-21 06:47
Normal topic mover "RepackMinimize" does not support chains > 2?
by jarod » Mon, 2013-05-20 02:17
6
6,923 by jarod
Mon, 2014-04-21 06:47
Normal topic segmentation fault after core.kinematics.FoldTree in homology modeling
by pdbb » Mon, 2012-10-08 14:27
7
6,928 by rmoretti
Mon, 2014-04-21 06:47
Normal topic "OSError: [Errno 2]” in “clustering.py”
by lanselibai » Sat, 2014-10-11 14:30
4
6,950 by lanselibai
Fri, 2014-10-17 05:10
Normal topic How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"?
by lanselibai » Tue, 2014-11-04 14:56
7
6,981 by lanselibai
Wed, 2014-11-12 11:17
Normal topic protein structure prediction using relax -- high-powered jobs
by rfieldhouse » Mon, 2011-05-30 18:29
7
7,038 by dimaio
Mon, 2014-04-21 06:47
Normal topic Incorrect Jump being set in RosettaScripts docking mover
by weehee » Fri, 2012-06-08 10:23
6
7,041 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Problem about energy score
by tfliu » Tue, 2013-11-05 02:09
7
7,101 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic symmetric docking and constraints
by ytao » Thu, 2013-05-02 12:08
5
7,147 by attesor
Wed, 2015-10-21 13:53
Normal topic Why do non proten ligands get a very high score in kinematic loop modeling/ in general?
by a_s_a » Wed, 2011-06-15 00:03
8
7,174 by a_s_a
Mon, 2014-04-21 06:47
Normal topic parameterizing new residues
by chiendarret » Fri, 2012-02-03 22:59
3
7,192 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-'
by AG88 » Thu, 2011-11-03 01:25
4
7,203 by weitzner
Mon, 2014-04-21 06:47
Normal topic [SOLVED]core.io.silent: [ WARNING ] ...
by fred » Wed, 2011-10-05 07:38
8
7,216 by fred
Mon, 2014-04-21 06:47
Normal topic fixbb design using damped LJ
by Anonymous » Fri, 2012-08-17 03:51
8
7,241 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Cannot get a negative score after relax
by kxiao » Tue, 2014-01-28 22:28
6
7,244 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Fold tree C->N: RosettaScripts
by aroop » Wed, 2013-02-13 10:31
8
7,340 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking with constraints
by ytao » Tue, 2013-04-02 09:45
6
7,425 by smlewis
Mon, 2014-04-21 06:47
Normal topic Distinctions between InterfaceAnalyzer and RosettaScript
by achambe » Wed, 2015-06-17 10:14
6
7,432 by rmoretti
Wed, 2015-09-02 12:43
Normal topic How to define pi-pi stacking in cst file?
by lzx32 » Mon, 2011-07-04 23:47
6
7,468 by lzx32
Mon, 2014-04-21 06:47
Normal topic Inserting residues using RosettaRemodel
by eleishaj » Tue, 2015-11-24 08:54
7
7,473 by eyong123
Wed, 2015-12-09 07:17
Normal topic Surface Docking Application Crash
by dkozuch » Sat, 2017-09-02 18:32
12
7,502 by Anpu
Tue, 2018-09-25 19:06
Normal topic cluster.mpi.linuxgccrelease failed
by fred » Mon, 2014-02-24 12:11
3
7,615 by fred
Thu, 2014-03-27 11:29
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