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Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic ddg dG_separate
by gw » Wed, 2012-08-22 11:25
5
5,263 by smlewis
Mon, 2014-04-21 06:47
Normal topic docking in rosetta 3.3
by Ammu » Thu, 2012-03-15 12:03
6
5,286 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetry definition for coiled-coil dimer and trimer
by kszczepaniak » Fri, 2013-10-11 05:33
2
5,290 by kszczepaniak
Mon, 2014-04-21 06:48
Normal topic Steric clashes in RNA minimization
by brianmlee » Tue, 2014-11-18 18:29
5
5,291 by brianmlee
Mon, 2014-11-24 19:40
Normal topic Enzdes: increase weight of energy term for steric clashes with ligand
by eyong123 » Wed, 2015-03-25 09:12
5
5,310 by rmoretti
Fri, 2015-04-24 12:02
Normal topic Antibody protocol: unusual antibodies, and chainbreaks
by Cyril Cros » Mon, 2014-07-21 17:03
5
5,344 by Cyril Cros
Tue, 2014-11-25 08:21
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
5
5,346 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic SEWING and motif file generation
by rbjacob » Thu, 2018-07-12 07:28
10
5,353 by zhangying1990
Tue, 2019-06-04 18:04
Normal topic protein docking failed
by albumns » Thu, 2012-11-08 02:59
6
5,417 by rmoretti
Mon, 2014-04-21 06:47
Normal topic matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302
by siciliu » Fri, 2014-03-21 17:51
5
5,429 by siciliu
Thu, 2014-04-10 09:50
Normal topic too many constraints result in no output pose
by Yao Wu » Sun, 2012-11-18 23:45
5
5,436 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta.script segmentation fault
by felipet » Wed, 2013-10-02 10:41
4
5,455 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic relax with resfile
by gw » Fri, 2011-08-05 10:57
3
5,476 by nannemdp
Mon, 2014-04-21 06:47
Normal topic how to fix the ATP HETATM by using movemap or constraint file?
by ziqi1234 » Mon, 2017-11-20 06:43
9
5,506 by ziqi1234
Wed, 2017-11-22 06:21
Normal topic ndruns and nstruct in fixbb
by Anonymous » Tue, 2012-08-07 01:52
5
5,533 by Anonymous
Mon, 2014-04-21 06:47
Normal topic ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used?
by lanselibai » Tue, 2015-02-24 02:38
4
5,544 by lanselibai
Sun, 2015-03-01 15:00
Normal topic flexpep docking problem-----How to do with phosphorylation peptide?
by MajorID » Thu, 2011-06-02 00:37
4
5,554 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Comparative modeling stops with "no more batches to process... " / no output
by eskici » Tue, 2012-08-28 12:13
6
5,557 by eskici
Mon, 2014-04-21 06:47
Normal topic Help with enzyme design
by lzx32 » Fri, 2011-04-08 22:29
6
5,629 by lzx32
Mon, 2014-04-21 06:47
Normal topic FloppyTail :How to specify range of design(mutation)
by syoifczeri » Mon, 2015-11-02 04:14
6
5,629 by syoifczeri
Sat, 2015-11-07 21:42
Normal topic the flexpepdock refinement and ab-initio
by tfliu » Mon, 2013-12-23 19:17
6
5,629 by tfliu
Mon, 2014-04-21 06:48
Normal topic Problems with ligand when running RosettaLigand
by Cat » Mon, 2013-05-20 15:58
5
5,630 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Relax a structure with >1 copy of a modified residue fails [Solved]
by franfdez » Wed, 2012-02-08 00:47
6
5,692 by franfdez
Mon, 2014-04-21 06:47
Normal topic deltaG calculations
by Prasanth Kumar » Wed, 2013-05-15 07:06
3
5,714 by rmoretti
Mon, 2014-04-21 06:47
Normal topic SnugDock - What protocol should I use?
by dfcoelho » Tue, 2018-11-27 07:32
8
5,745 by dfcoelho
Wed, 2018-11-28 08:07
Normal topic Results of enzyme_design not consistent with Resfile
by yogeshkd » Thu, 2013-02-14 15:56
6
5,775 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic PDB format for RosettaDNA
by brspurri » Thu, 2013-05-30 11:21
5
5,782 by brspurri
Mon, 2014-04-21 06:47
Normal topic RosettaVIP: ERROR: seqpos <= size()
by Anonymous » Thu, 2012-07-26 07:30
5
5,833 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Write one's own constraint type
by djpittdj » Thu, 2012-11-08 12:29
7
5,841 by smlewis
Mon, 2014-04-21 06:47
Normal topic the ddg of mutant is same as the wt
by deepanshuiitb » Wed, 2015-03-04 11:56
6
5,847 by jadolfbr
Tue, 2015-04-07 10:50
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Sun, 2011-02-13 20:34
7
5,911 by yarovoy
Mon, 2014-04-21 06:47
Normal topic Noncanonical amino acids
by wsgosal » Tue, 2014-03-18 05:29
8
5,928 by e3lm
Thu, 2022-05-26 12:51
Normal topic RosettaLigand - strange score behavior
by Gerdes » Mon, 2014-02-03 02:24
6
5,992 by Gerdes
Fri, 2014-02-07 06:48
Normal topic ddg_monomer: what is the meaning of "total score" and "score"?
by lanselibai » Tue, 2015-01-13 14:49
4
6,006 by rmoretti
Thu, 2015-04-16 11:23
Normal topic variable length fragments for Ab initio
by attesor » Wed, 2015-07-01 06:13
7
6,008 by rmoretti
Tue, 2015-08-18 16:47
Normal topic Rosetta dock irmsd
by Pernille » Sun, 2015-04-26 13:51
5
6,023 by rmoretti
Mon, 2015-10-12 15:10
Normal topic fix the left part doesn't work
by albumns » Wed, 2012-11-07 00:02
9
6,046 by albumns
Mon, 2014-04-21 06:47
Normal topic suppress pdb output from backrub
by attesor » Mon, 2014-10-27 11:16
7
6,065 by rmoretti
Mon, 2014-11-03 15:47
Normal topic Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading
by Corvin » Tue, 2020-06-30 00:36
12
6,099 by Corvin
Tue, 2020-11-10 01:22
Normal topic If "clustering.py" can be used for PDBs contain two chains?
by lanselibai » Wed, 2014-11-05 06:05
7
6,152 by lanselibai
Tue, 2014-12-02 09:43
Normal topic rosetta protein protein docking start up
by vk » Fri, 2011-06-24 09:01
5
6,164 by smlewis
Mon, 2014-04-21 06:47
Normal topic extract silent error - tag mismatch
by shrutikhare » Thu, 2014-04-03 00:13
5
6,202 by rmoretti
Mon, 2014-04-21 10:47
Normal topic P-P docking with suitable constraint type
by Yao Wu » Tue, 2012-11-13 18:03
5
6,232 by rmoretti
Mon, 2014-04-21 06:47
Normal topic where is pdb2vall.py
by tevang » Thu, 2013-01-24 13:35
7
6,238 by dktest
Mon, 2014-04-21 06:47
Normal topic CS-HM-Rosetta
by pwurm » Thu, 2013-03-07 12:56
6
6,276 by Marius1987
Fri, 2016-02-05 07:20
Normal topic Enzyme design with variable CST blocks possible?
by petrikigor » Thu, 2011-10-06 11:24
6
6,282 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Enzdes score file discrepancy between generated pdb and scores.out
by eyong123 » Wed, 2015-03-25 08:52
6
6,294 by eyong123
Mon, 2015-06-29 04:44
Normal topic ab inito memberane(error in alignblast.pl)
by kingljy » Tue, 2011-05-03 23:41
6
6,301 by karthishanmugam
Mon, 2014-04-21 06:47
Normal topic How to find cluster core structure?
by assignfit » Thu, 2012-03-29 20:35
7
6,304 by attesor
Wed, 2017-06-14 07:32
Normal topic Using MoveMap within Relax Application?
by m_grisewood » Mon, 2012-08-13 12:21
5
6,316 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic Dimer of dimers
by smiruthi » Fri, 2011-04-15 10:41
4
6,331 by IAndre
Mon, 2014-04-21 06:47
Normal topic Conformers in EnzDes
by JorickF » Fri, 2015-03-06 04:41
5
6,380 by rmoretti
Tue, 2015-03-31 08:56
Normal topic ligand docking, how to combine some silent.out files into a silent_all.out file
by Ryhon Wang » Fri, 2013-12-06 01:53
6
6,403 by rmoretti
Wed, 2017-01-11 12:53
Normal topic Including waters in RosettaCM
by ajkal » Thu, 2017-04-27 11:59
9
6,434 by rpavlov
Tue, 2017-06-06 11:45
Normal topic analysis of clustering
by loris.moretti » Thu, 2012-04-19 02:52
3
6,436 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RosettaCM Biological Assembly
by jrcf » Mon, 2015-10-26 11:01
5
6,506 by rmoretti
Tue, 2015-11-24 15:30
Normal topic Abinitio Relax Error from -kill_hairpins
by attesor » Tue, 2014-10-28 05:33
7
6,556 by rmoretti
Tue, 2014-11-04 10:28
Normal topic About scorefunction.
by Run » Mon, 2013-09-09 23:08
7
6,585 by rmoretti
Mon, 2014-04-21 06:48
Normal topic problem creating lips4 file using run_lips.pl
by adva » Sun, 2015-02-15 06:22
5
6,629 by linucks
Mon, 2016-06-20 12:02
Normal topic RosettaRemodel can not work now?
by myputer » Tue, 2013-08-13 16:56
7
6,636 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Abinitio (3.4) Error: no fragment to compute secondary structure
by skovacs » Tue, 2012-09-18 13:49
6
6,655 by skovacs
Mon, 2014-04-21 06:47
Normal topic mover "RepackMinimize" does not support chains > 2?
by jarod » Mon, 2013-05-20 02:17
6
6,689 by jarod
Mon, 2014-04-21 06:47
Normal topic segmentation fault after core.kinematics.FoldTree in homology modeling
by pdbb » Mon, 2012-10-08 14:27
7
6,695 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"?
by lanselibai » Tue, 2014-11-04 14:56
7
6,699 by lanselibai
Wed, 2014-11-12 11:17
Normal topic "OSError: [Errno 2]” in “clustering.py”
by lanselibai » Sat, 2014-10-11 14:30
4
6,778 by lanselibai
Fri, 2014-10-17 05:10
Normal topic protein structure prediction using relax -- high-powered jobs
by rfieldhouse » Mon, 2011-05-30 18:29
7
6,815 by dimaio
Mon, 2014-04-21 06:47
Normal topic Incorrect Jump being set in RosettaScripts docking mover
by weehee » Fri, 2012-06-08 10:23
6
6,832 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Problem about energy score
by tfliu » Tue, 2013-11-05 02:09
7
6,836 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic Why do non proten ligands get a very high score in kinematic loop modeling/ in general?
by a_s_a » Wed, 2011-06-15 00:03
8
6,922 by a_s_a
Mon, 2014-04-21 06:47
Normal topic [SOLVED]core.io.silent: [ WARNING ] ...
by fred » Wed, 2011-10-05 07:38
8
6,929 by fred
Mon, 2014-04-21 06:47
Normal topic symmetric docking and constraints
by ytao » Thu, 2013-05-02 12:08
5
6,942 by attesor
Wed, 2015-10-21 13:53
Normal topic parameterizing new residues
by chiendarret » Fri, 2012-02-03 22:59
3
6,956 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-'
by AG88 » Thu, 2011-11-03 01:25
4
6,962 by weitzner
Mon, 2014-04-21 06:47
Normal topic fixbb design using damped LJ
by Anonymous » Fri, 2012-08-17 03:51
8
6,976 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Cannot get a negative score after relax
by kxiao » Tue, 2014-01-28 22:28
6
7,033 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Fold tree C->N: RosettaScripts
by aroop » Wed, 2013-02-13 10:31
8
7,038 by smlewis
Mon, 2014-04-21 06:47
Normal topic Surface Docking Application Crash
by dkozuch » Sat, 2017-09-02 18:32
12
7,106 by Anpu
Tue, 2018-09-25 19:06
Normal topic Distinctions between InterfaceAnalyzer and RosettaScript
by achambe » Wed, 2015-06-17 10:14
6
7,141 by rmoretti
Wed, 2015-09-02 12:43
Normal topic Inserting residues using RosettaRemodel
by eleishaj » Tue, 2015-11-24 08:54
7
7,153 by eyong123
Wed, 2015-12-09 07:17
Normal topic How to define pi-pi stacking in cst file?
by lzx32 » Mon, 2011-07-04 23:47
6
7,211 by lzx32
Mon, 2014-04-21 06:47
Normal topic Docking with constraints
by ytao » Tue, 2013-04-02 09:45
6
7,211 by smlewis
Mon, 2014-04-21 06:47
Normal topic cluster.mpi.linuxgccrelease failed
by fred » Mon, 2014-02-24 12:11
3
7,456 by fred
Thu, 2014-03-27 11:29
Normal topic Ensemble Docking in Rosetta3.5?
by protos_heis » Fri, 2015-05-22 06:42
7
7,457 by protos_heis
Mon, 2015-06-08 07:00
Normal topic cryptic error message from remodel in rosetta_scripts
by petrikigor » Mon, 2012-12-03 15:13
9
7,493 by petrikigor
Mon, 2014-04-21 06:47
Normal topic problems in InterfaceAnalyzer analysis
by chenchaozhao » Fri, 2011-12-02 23:36
9
7,498 by smlewis
Mon, 2014-04-21 06:47
Normal topic modeling phosphorylated residue
by rosetter » Fri, 2011-03-18 08:13
7
7,519 by smlewis
Mon, 2014-04-21 06:47
Normal topic Where is the RosettaHoles2 executable?
by lah435 » Mon, 2012-06-04 15:15
11
7,532 by smlewis
Mon, 2014-04-21 06:47
Normal topic to create the template pdb file
by benniu2004 » Sat, 2012-12-29 23:04
8
7,643 by benniu2004
Mon, 2014-04-21 06:47
Normal topic rosetta_2013wk52: make_fragments.pl failed
by fred » Thu, 2014-01-30 12:41
6
7,717 by rmoretti
Fri, 2014-02-07 08:01
Normal topic how to repacking loop while freezing other residues?
by jfhuang » Wed, 2012-07-25 06:59
10
7,721 by jfhuang
Mon, 2014-04-21 06:47
Normal topic loop re-modeling std::out_of_range
by rlwoltz » Tue, 2013-03-12 18:11
9
7,753 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with Ligand Docking
by saxen » Fri, 2011-08-19 00:19
8
7,777 by glemmon
Mon, 2014-04-21 06:47
Normal topic neutral N-term and C-term
by nawsad » Sun, 2013-06-09 10:20
7
7,928 by helenah
Thu, 2020-10-08 05:29
Normal topic Should FastRelax be commented out in Calculate_protein_protein_ddg demo?
by cossio » Mon, 2016-10-31 12:01
11
7,953 by cossio
Mon, 2016-11-21 07:56
Normal topic ORBITAL records in self generated .params (ligands)
by ast » Thu, 2014-03-06 07:22
9
7,964 by ast
Thu, 2014-03-13 07:17
Hot topic Folppy Tail and Constraints
by sfulad2 » Fri, 2017-05-12 12:23
15
8,196 by smlewis
Fri, 2017-09-08 09:16
Normal topic Parse error while reading in XML file in ROSETTA Scripts
by rweisse » Fri, 2014-08-29 03:24
5
8,316 by a-eatemadi@razi...
Sun, 2017-08-06 03:49
Normal topic ab initio membrane error (frag9 file...)
by almeida » Mon, 2012-07-30 08:53
9
8,404 by rmoretti
Tue, 2014-08-12 08:15
Normal topic Rosetta residue design for DNA binding
by deltag » Wed, 2012-12-12 11:35
5
8,426 by deltag
Mon, 2014-04-21 06:47
Normal topic RosettaDNA error
by deltag » Fri, 2012-12-07 06:09
10
8,604 by deltag
Mon, 2014-04-21 06:47
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