You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
| Topic / Topic starter | Replies |
Views |
Last post | |
|---|---|---|---|---|
|
score_jd2.mpi.linuxgccrelease failed by fred » Wed, 2014-03-26 13:54 |
2 |
5,256 |
by fred Tue, 2014-04-01 08:24 |
|
|
An error with score app by Genta » Tue, 2019-10-29 18:46 |
0 |
5,268 |
by Genta Tue, 2019-10-29 18:46 |
|
|
-score_app:linmin flag not working by fglaser » Tue, 2011-03-01 06:04 |
5 |
5,276 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Error while reading in silent file by rweisse » Mon, 2015-04-20 00:31 |
4 |
5,291 |
by rmoretti Thu, 2015-04-30 16:46 |
|
|
fixbb with symmetry error by Prasanth Kumar » Sun, 2014-01-26 10:56 |
4 |
5,295 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
|
|
ddg with ligands by bhaines1 » Mon, 2011-12-05 14:32 |
4 |
5,295 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Unable to run Rosetta LoopModeling application by BDBorrillo » Tue, 2011-07-19 14:06 |
2 |
5,313 |
by BDBorrillo Mon, 2014-04-21 06:47 |
|
|
How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"? by lanselibai » Mon, 2014-10-13 10:26 |
5 |
5,323 |
by lanselibai Wed, 2014-10-15 03:52 |
|
|
Cartesian-space refinement by sjyang7 » Wed, 2017-05-31 19:34 |
5 |
5,326 |
by sjyang7 Sat, 2017-06-03 06:09 |
|
|
Standalone alanine scanning protocol by exchhattu » Thu, 2011-10-13 19:40 |
1 |
5,350 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
extract_pdb application parse error with silent file by staciekim » Tue, 2017-08-22 12:39 |
5 |
5,377 |
by rmoretti Thu, 2017-08-24 08:19 |
|
|
Sequence design with mixed fixbb-relax protocol by kszczepaniak » Thu, 2013-10-03 08:11 |
4 |
5,379 |
by fede Wed, 2020-09-23 11:24 |
|
|
Over-docking with FlexPepDock by gw » Fri, 2012-07-20 13:10 |
5 |
5,472 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
flexpep docking problem by michael_luntan » Mon, 2011-04-18 17:15 |
5 |
5,484 |
by michael_luntan Mon, 2014-04-21 06:47 |
|
|
Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
4 |
5,504 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
|
|
ddg_monomer and membrane proteins by afmo » Tue, 2014-05-20 02:37 |
4 |
5,520 |
by afmo Thu, 2014-05-22 01:19 |
|
|
ab initio protein prediction using homologs by justin » Mon, 2012-02-13 07:52 |
5 |
5,533 |
by justin Mon, 2014-04-21 06:47 |
|
|
Abinitio doesn't run but does not give output or error by Irving » Fri, 2016-10-28 10:04 |
6 |
5,534 |
by rmoretti Mon, 2017-01-23 08:52 |
|
|
Problem readin .ccp4 map file by jljbbc » Tue, 2011-05-03 11:29 |
4 |
5,535 |
by jljbbc Mon, 2014-04-21 06:47 |
|
|
Problem with hotspot constraints. by jarek » Wed, 2012-10-17 03:22 |
6 |
5,540 |
by xfliu Mon, 2014-04-21 06:47 |
|
|
RosettaLigand: How to score native pose in protein-ligand docking experiment? by Ryhon Wang » Tue, 2015-11-10 01:30 |
5 |
5,546 |
by Ryhon Wang Mon, 2016-01-04 19:59 |
|
|
Error src/core/scoring/MembraneTopology.cc line: 139 by Daniel Hall » Thu, 2017-07-13 04:58 |
6 |
5,554 |
by rmoretti Tue, 2017-07-18 09:00 |
|
|
RNA structure prediction by emaghdam » Sat, 2014-02-08 01:30 |
4 |
5,566 |
by rmoretti Mon, 2014-02-24 09:12 |
|
|
Pmut_scan with symmetry by felipet » Thu, 2015-02-05 08:53 |
5 |
5,575 |
by felipet Wed, 2015-02-11 05:13 |
|
|
homology modelling with DNA by zadie1118 » Fri, 2012-09-28 06:35 |
4 |
5,581 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Symmetry definition for coiled-coil dimer and trimer by kszczepaniak » Fri, 2013-10-11 05:33 |
2 |
5,606 |
by kszczepaniak Mon, 2014-04-21 06:48 |
|
|
Line search failed even after resetting Hessian by Loki01 » Wed, 2017-12-13 16:52 |
6 |
5,606 |
by Loki01 Thu, 2018-02-15 13:54 |
|
|
rna structure prediction by cbala » Thu, 2011-04-14 07:42 |
5 |
5,621 |
by mkoohim Mon, 2014-04-21 06:47 |
|
|
Abinitio.relax problem on centos by krlitros87 » Wed, 2014-09-24 11:27 |
4 |
5,624 |
by jadolfbr Tue, 2014-10-07 16:05 |
|
|
Up to date Vall database by JadAbbass » Sat, 2013-06-29 10:35 |
3 |
5,626 |
by rmoretti Tue, 2017-06-20 09:02 |
|
|
loop modeling during enzyme design? by lzx32 » Wed, 2011-11-16 00:30 |
6 |
5,683 |
by lzx32 Mon, 2014-04-21 06:47 |
|
|
score to use for picking top docking solutions? by sudhar » Tue, 2011-06-14 06:47 |
3 |
5,687 |
by weitzner Mon, 2014-04-21 06:47 |
|
|
SnugDocking a VHH:antigen complex possible? by David Weis » Thu, 2017-02-16 05:57 |
7 |
5,733 |
by rmoretti Thu, 2017-07-06 13:00 |
|
|
Segmentation Fault by ajaniharesh » Fri, 2019-03-29 11:21 |
4 |
5,738 |
by ajaniharesh Thu, 2019-04-04 07:07 |
|
|
scoring of beta sandwich protein by attesor » Mon, 2014-11-17 08:24 |
6 |
5,759 |
by rmoretti Thu, 2014-11-20 10:46 |
|
|
ERROR: Unable to fill in missing atoms. by mieczyslaw » Tue, 2020-10-20 09:43 |
7 |
5,764 |
by rayyoung Thu, 2021-11-18 10:13 |
|
|
Converting -patch replonly residues to original sequence by subha » Mon, 2017-06-26 13:39 |
8 |
5,775 |
by smlewis Tue, 2017-07-04 15:42 |
|
|
docking in rosetta 3.3 by Ammu » Thu, 2012-03-15 12:03 |
6 |
5,823 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database by Corvin » Tue, 2019-10-01 02:04 |
6 |
5,828 |
by Corvin Tue, 2019-10-15 01:12 |
|
|
symmetric design in the presence of a nonsymmetric ligand by msardejani » Fri, 2016-09-30 15:17 |
6 |
5,848 |
by msardejani Sat, 2016-10-01 12:55 |
|
|
symmetrical membrane modeling by rlwoltz » Tue, 2013-10-29 03:41 |
5 |
5,850 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
Enzdes: increase weight of energy term for steric clashes with ligand by eyong123 » Wed, 2015-03-25 09:12 |
5 |
5,852 |
by rmoretti Fri, 2015-04-24 12:02 |
|
|
Rotamers used in fixbb by lanselibai » Thu, 2014-11-06 02:47 |
6 |
5,855 |
by lanselibai Tue, 2014-11-11 15:28 |
|
|
rosetta.script segmentation fault by felipet » Wed, 2013-10-02 10:41 |
4 |
5,859 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
Steric clashes in RNA minimization by brianmlee » Tue, 2014-11-18 18:29 |
5 |
5,892 |
by brianmlee Mon, 2014-11-24 19:40 |
|
|
ddg dG_separate by gw » Wed, 2012-08-22 11:25 |
5 |
5,897 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ddg_monomer consumes massive RAM by cossio » Fri, 2018-03-09 17:02 |
7 |
5,901 |
by rmoretti Mon, 2018-03-19 12:12 |
|
|
CoupledMoves not altering backbone coordinates? by amorin » Wed, 2021-01-20 11:38 |
15 |
5,918 |
by amorin Sat, 2021-02-27 20:29 |
|
|
too many constraints result in no output pose by Yao Wu » Sun, 2012-11-18 23:45 |
5 |
5,933 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
protein docking failed by albumns » Thu, 2012-11-08 02:59 |
6 |
5,940 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
relax with resfile by gw » Fri, 2011-08-05 10:57 |
3 |
5,958 |
by nannemdp Mon, 2014-04-21 06:47 |
|
|
Antibody protocol: unusual antibodies, and chainbreaks by Cyril Cros » Mon, 2014-07-21 17:03 |
5 |
5,973 |
by Cyril Cros Tue, 2014-11-25 08:21 |
|
|
Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring by brspurri » Wed, 2017-03-29 13:19 |
7 |
6,002 |
by matteoferla Mon, 2021-07-19 06:13 |
|
|
matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302 by siciliu » Fri, 2014-03-21 17:51 |
5 |
6,004 |
by siciliu Thu, 2014-04-10 09:50 |
|
|
ndruns and nstruct in fixbb by Anonymous » Tue, 2012-08-07 01:52 |
5 |
6,065 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
Comparative modeling stops with "no more batches to process... " / no output by eskici » Tue, 2012-08-28 12:13 |
6 |
6,085 |
by eskici Mon, 2014-04-21 06:47 |
|
|
ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used? by lanselibai » Tue, 2015-02-24 02:38 |
4 |
6,089 |
by lanselibai Sun, 2015-03-01 15:00 |
|
|
flexpep docking problem-----How to do with phosphorylation peptide? by MajorID » Thu, 2011-06-02 00:37 |
4 |
6,111 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
InterfaceAnalyzer：“too many tries in fill_missing_atoms!” by mxp » Tue, 2019-08-06 00:41 |
8 |
6,151 |
by mxp Mon, 2019-08-12 18:42 |
|
|
the flexpepdock refinement and ab-initio by tfliu » Mon, 2013-12-23 19:17 |
6 |
6,165 |
by tfliu Mon, 2014-04-21 06:48 |
|
|
FloppyTail :How to specify range of design(mutation) by syoifczeri » Mon, 2015-11-02 04:14 |
6 |
6,166 |
by syoifczeri Sat, 2015-11-07 21:42 |
|
|
deltaG calculations by Prasanth Kumar » Wed, 2013-05-15 07:06 |
3 |
6,198 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Help with enzyme design by lzx32 » Fri, 2011-04-08 22:29 |
6 |
6,223 |
by lzx32 Mon, 2014-04-21 06:47 |
|
|
PDB format for RosettaDNA by brspurri » Thu, 2013-05-30 11:21 |
5 |
6,227 |
by brspurri Mon, 2014-04-21 06:47 |
|
|
Relax a structure with >1 copy of a modified residue fails [Solved] by franfdez » Wed, 2012-02-08 00:47 |
6 |
6,233 |
by franfdez Mon, 2014-04-21 06:47 |
|
|
RosettaVIP: ERROR: seqpos <= size() by Anonymous » Thu, 2012-07-26 07:30 |
5 |
6,307 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
Results of enzyme_design not consistent with Resfile by yogeshkd » Thu, 2013-02-14 15:56 |
6 |
6,313 |
by yogeshkd Mon, 2014-04-21 06:47 |
|
|
SEWING and motif file generation by rbjacob » Thu, 2018-07-12 07:28 |
10 |
6,368 |
by zhangying1990 Tue, 2019-06-04 18:04 |
|
|
the ddg of mutant is same as the wt by deepanshuiitb » Wed, 2015-03-04 11:56 |
6 |
6,422 |
by jadolfbr Tue, 2015-04-07 10:50 |
|
|
Write one's own constraint type by djpittdj » Thu, 2012-11-08 12:29 |
7 |
6,437 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
how to fix the ATP HETATM by using movemap or constraint file? by ziqi1234 » Mon, 2017-11-20 06:43 |
9 |
6,484 |
by ziqi1234 Wed, 2017-11-22 06:21 |
|
|
Problems with ligand when running RosettaLigand by Cat » Mon, 2013-05-20 15:58 |
6 |
6,490 |
by Aben Tue, 2023-04-18 01:31 |
|
|
Fragment files for membrane_abinitio application by sumukh21 » Sun, 2011-02-13 20:34 |
7 |
6,558 |
by yarovoy Mon, 2014-04-21 06:47 |
|
|
ddg_monomer: what is the meaning of "total score" and "score"? by lanselibai » Tue, 2015-01-13 14:49 |
4 |
6,585 |
by rmoretti Thu, 2015-04-16 11:23 |
|
|
RosettaLigand - strange score behavior by Gerdes » Mon, 2014-02-03 02:24 |
6 |
6,616 |
by Gerdes Fri, 2014-02-07 06:48 |
|
|
Rosetta dock irmsd by Pernille » Sun, 2015-04-26 13:51 |
5 |
6,688 |
by rmoretti Mon, 2015-10-12 15:10 |
|
|
variable length fragments for Ab initio by attesor » Wed, 2015-07-01 06:13 |
7 |
6,696 |
by rmoretti Tue, 2015-08-18 16:47 |
|
|
rosetta protein protein docking start up by vk » Fri, 2011-06-24 09:01 |
5 |
6,749 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
extract silent error - tag mismatch by shrutikhare » Thu, 2014-04-03 00:13 |
5 |
6,752 |
by rmoretti Mon, 2014-04-21 10:47 |
|
|
fix the left part doesn't work by albumns » Wed, 2012-11-07 00:02 |
9 |
6,754 |
by albumns Mon, 2014-04-21 06:47 |
|
|
P-P docking with suitable constraint type by Yao Wu » Tue, 2012-11-13 18:03 |
5 |
6,776 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
suppress pdb output from backrub by attesor » Mon, 2014-10-27 11:16 |
7 |
6,791 |
by rmoretti Mon, 2014-11-03 15:47 |
|
|
where is pdb2vall.py by tevang » Thu, 2013-01-24 13:35 |
7 |
6,807 |
by dktest Mon, 2014-04-21 06:47 |
|
|
CS-HM-Rosetta by pwurm » Thu, 2013-03-07 12:56 |
6 |
6,827 |
by Marius1987 Fri, 2016-02-05 07:20 |
|
|
ab inito memberane(error in alignblast.pl) by kingljy » Tue, 2011-05-03 23:41 |
6 |
6,827 |
by karthishanmugam Mon, 2014-04-21 06:47 |
|
|
Dimer of dimers by smiruthi » Fri, 2011-04-15 10:41 |
4 |
6,836 |
by IAndre Mon, 2014-04-21 06:47 |
|
|
If "clustering.py" can be used for PDBs contain two chains? by lanselibai » Wed, 2014-11-05 06:05 |
7 |
6,856 |
by lanselibai Tue, 2014-12-02 09:43 |
|
|
analysis of clustering by loris.moretti » Thu, 2012-04-19 02:52 |
3 |
6,893 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Using MoveMap within Relax Application? by m_grisewood » Mon, 2012-08-13 12:21 |
5 |
6,901 |
by m_grisewood Mon, 2014-04-21 06:47 |
|
|
SnugDock - What protocol should I use? by dfcoelho » Tue, 2018-11-27 07:32 |
8 |
6,902 |
by dfcoelho Wed, 2018-11-28 08:07 |
|
|
Enzyme design with variable CST blocks possible? by petrikigor » Thu, 2011-10-06 11:24 |
6 |
6,928 |
by petrikigor Mon, 2014-04-21 06:47 |
|
|
Conformers in EnzDes by JorickF » Fri, 2015-03-06 04:41 |
5 |
6,935 |
by rmoretti Tue, 2015-03-31 08:56 |
|
|
Enzdes score file discrepancy between generated pdb and scores.out by eyong123 » Wed, 2015-03-25 08:52 |
6 |
6,980 |
by eyong123 Mon, 2015-06-29 04:44 |
|
|
ligand docking, how to combine some silent.out files into a silent_all.out file by Ryhon Wang » Fri, 2013-12-06 01:53 |
6 |
7,024 |
by rmoretti Wed, 2017-01-11 12:53 |
|
|
How to find cluster core structure? by assignfit » Thu, 2012-03-29 20:35 |
7 |
7,030 |
by attesor Wed, 2017-06-14 07:32 |
|
|
Noncanonical amino acids by wsgosal » Tue, 2014-03-18 05:29 |
8 |
7,071 |
by e3lm Thu, 2022-05-26 12:51 |
|
|
RosettaCM Biological Assembly by jrcf » Mon, 2015-10-26 11:01 |
5 |
7,081 |
by rmoretti Tue, 2015-11-24 15:30 |
|
|
problem creating lips4 file using run_lips.pl by adva » Sun, 2015-02-15 06:22 |
5 |
7,218 |
by linucks Mon, 2016-06-20 12:02 |
|
|
"OSError: [Errno 2]” in “clustering.py” by lanselibai » Sat, 2014-10-11 14:30 |
4 |
7,226 |
by lanselibai Fri, 2014-10-17 05:10 |
|
|
About scorefunction. by Run » Mon, 2013-09-09 23:08 |
7 |
7,230 |
by rmoretti Mon, 2014-04-21 06:48 |
Log in to post new content in the forum.
