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Rosetta 3 - Applications

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Normal topic limit_cluster_size default value
by sacch » Thu, 2011-11-24 17:57
2
2,136 by sacch
Mon, 2014-04-21 06:47
Normal topic Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking
by Corvin » Wed, 2019-06-19 08:40
5
2,119 by rmoretti
Tue, 2019-07-09 10:13
Normal topic Abinitio protocol and X-Ray diffraction data
by allan.ferrari » Wed, 2015-08-12 12:49
2
2,119 by allan.ferrari
Fri, 2015-08-28 12:07
Normal topic Error in using “loopmodel” for selective rebuilding
by sushreet » Mon, 2014-07-14 11:57
2
2,114 by sushreet
Tue, 2014-08-26 13:02
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
1
2,114 by smlewis
Mon, 2014-04-21 06:47
Normal topic Make Fragments
by Run » Mon, 2013-11-11 05:31
1
2,107 by smlewis
Mon, 2014-04-21 06:48
Normal topic Protein Design
by ac.research » Wed, 2017-02-15 19:25
1
2,101 by cdbahl
Sat, 2017-02-18 13:02
Normal topic FlexPepDock in RosettaScripts keeps running
by gw » Tue, 2012-08-21 12:31
1
2,099 by smlewis
Mon, 2014-04-21 06:47
Normal topic KeyError: 'subject-id' in antibody modelling
by bogac » Mon, 2017-03-06 02:00
2
2,098 by bogac
Tue, 2017-03-07 02:11
Normal topic Ligand Docking with RosettaScripts gives a ParsedProtocol exception
by brspurri » Sun, 2017-05-14 17:51
2
2,078 by brspurri
Mon, 2017-05-15 11:48
Normal topic restrain residues in docking
by albumns » Sat, 2013-11-02 08:52
1
2,072 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Filtering while clustering
by David Hoover » Wed, 2011-03-30 07:03
1
2,070 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop modeling scoring
by Nicky_Learning_... » Wed, 2015-05-13 20:00
1
2,061 by rmoretti
Mon, 2015-05-25 11:30
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
2,055 by Loki01
Thu, 2018-04-12 08:28
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
2,053 by subha
Fri, 2018-04-20 12:49
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
2,053 by smlewis
Mon, 2017-01-23 06:26
Normal topic rosetta backrub
by ladimafakher » Thu, 2018-10-04 08:01
4
2,052 by ladimafakher
Thu, 2018-11-01 03:47
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
2,048 by rmoretti
Tue, 2017-03-28 08:51
Normal topic Error with FlexPepDock
by aloshbau » Sat, 2013-08-10 11:51
1
2,047 by rmoretti
Mon, 2014-04-21 06:48
Normal topic FlexPepDock Concatenation
by cam11 » Mon, 2014-08-11 07:39
2
2,045 by cam11
Wed, 2014-08-13 10:06
Normal topic How to add a residue to one chain of an existing structure?
by sn » Mon, 2017-04-17 09:34
2
2,042 by sn
Thu, 2017-04-20 21:43
Normal topic interface_delta ligand_docking
by Prasanth Kumar » Tue, 2013-06-18 08:37
1
2,040 by rmoretti
Mon, 2014-04-21 06:48
Normal topic contents of span file
by tevang » Mon, 2013-04-15 05:01
1
2,040 by smlewis
Mon, 2014-04-21 06:47
Normal topic Any backrub expert?
by johnnytam100 » Fri, 2019-03-01 01:58
4
2,039 by johnnytam100
Sun, 2019-03-03 23:42
Normal topic score:weights for fixbb application in Rosetta 3.5
by tylerborrman » Tue, 2015-07-28 14:16
2
2,034 by tylerborrman
Wed, 2015-09-23 10:51
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
2,033 by rmoretti
Thu, 2018-06-28 12:58
Normal topic protein-protein docking
by cbala » Mon, 2011-04-18 09:15
1
2,033 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
2,032 by rmoretti
Mon, 2014-05-12 15:08
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
2,026 by David Weis
Mon, 2017-03-13 06:40
Normal topic Docking with constraint
by Hongtham » Sat, 2014-12-27 09:56
2
2,022 by rmoretti
Fri, 2015-01-02 09:43
Normal topic latest version of rosetta unable to build models
by pramod » Mon, 2014-11-03 11:31
1
1,999 by rmoretti
Tue, 2014-11-04 10:33
Normal topic Coverage of sequence space?
by johnnytam100 » Sun, 2019-04-21 23:25
4
1,996 by johnnytam100
Thu, 2019-04-25 19:28
Normal topic Failing Fragment libraries us Chemical shifts with Robettaa
by kalabharath » Tue, 2015-04-28 19:33
2
1,995 by kalabharath
Wed, 2015-04-29 16:21
Normal topic submit_NGK.py not creating output files
by nkato2 » Wed, 2013-08-28 23:37
1
1,994 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Incorporating iron-sulfur cluster into ROSETTA applications
by Derek Smith » Thu, 2014-08-14 23:12
1
1,991 by rmoretti
Fri, 2014-08-15 08:06
Normal topic Ligand params file proton_chi parameters
by staciekim » Thu, 2017-08-17 14:50
2
1,976 by staciekim
Thu, 2017-08-17 17:06
Normal topic The question about ligand score function
by asbelx » Sun, 2018-06-17 02:07
2
1,975 by asbelx
Mon, 2018-06-18 22:34
Normal topic error mesages from RosettaDock
by AlanZhao » Mon, 2011-03-21 11:42
1
1,972 by smlewis
Mon, 2014-04-21 06:47
Normal topic membrane modeling error
by benniu2004 » Mon, 2013-07-01 17:59
1
1,969 by smlewis
Mon, 2014-04-21 06:48
Normal topic DDG_monomer application
by shadrinams » Mon, 2018-02-12 12:14
2
1,968 by shadrinams
Wed, 2018-03-14 07:46
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
0
1,967 by kamau
Wed, 2014-09-24 11:35
Normal topic regarding extracting silent file - renamed tag
by shrutikhare » Thu, 2014-04-17 01:19
2
1,966 by shrutikhare
Fri, 2014-04-18 23:11
Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
1,964 by rmoretti
Wed, 2018-03-07 08:44
Normal topic relax VS. backrub
by jiongzhang » Mon, 2012-07-02 14:52
1
1,955 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with fixbb in Rosetta 3.5
by mdidonato » Wed, 2014-06-04 13:56
2
1,955 by mdidonato
Wed, 2014-06-04 14:55
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
1,950 by rmoretti
Mon, 2018-11-12 14:35
Normal topic Ligand creation
by Prasanth Kumar » Fri, 2013-08-02 09:48
1
1,947 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Comparative modeling
by MRH » Mon, 2013-08-19 23:08
1
1,947 by smlewis
Mon, 2014-04-21 06:48
Normal topic Remodel: neighbor cutoff
by felipet » Wed, 2014-07-16 08:11
2
1,943 by felipet
Thu, 2014-07-17 10:13
Normal topic cross correlation calculation
by jingwei xu » Sat, 2016-04-16 19:11
2
1,939 by jingwei xu
Wed, 2016-05-04 23:26
Normal topic Enzdes scorefile lost, can I recreate it
by eyong123 » Wed, 2015-04-15 05:55
2
1,937 by eyong123
Wed, 2015-04-22 11:33
Normal topic Can I change high-resolution filter in SymDock
by attesor » Fri, 2015-10-23 07:35
2
1,925 by attesor
Mon, 2015-10-26 09:01
Normal topic relax a protein with phosphorylated serine residue
by zruan » Thu, 2018-02-01 09:18
3
1,924 by rmoretti
Tue, 2018-02-06 09:47
Normal topic protein protein interaction design
by Negarsardar » Wed, 2019-05-15 06:13
3
1,923 by ajasja
Wed, 2019-05-15 15:40
Normal topic Design a peptide linked to small molecule ligand
by shaunmk » Mon, 2015-03-02 09:05
1
1,922 by rmoretti
Wed, 2015-03-25 12:39
Normal topic fold and dock protocol not working
by ytao » Mon, 2012-11-26 15:33
1
1,919 by smlewis
Mon, 2014-04-21 06:47
Normal topic Reproducing the exact result using information from previos run
by nawsad » Thu, 2013-03-14 12:05
2
1,919 by nawsad
Mon, 2014-04-21 06:47
Normal topic Representing Cross-linked nitrogens
by jjlee2 » Sat, 2011-11-26 18:42
1
1,918 by smlewis
Mon, 2014-04-21 06:47
Normal topic cartesian_ddg error: "Assertion `files.size() == 1` failed."
by cossio » Fri, 2018-05-11 09:59
2
1,918 by cossio
Fri, 2018-05-18 09:51
Normal topic Holes output interpretation
by lah435 » Mon, 2012-06-04 15:02
1
1,915 by smlewis
Mon, 2014-04-21 06:47
Normal topic trouble in floppytail modelling
by ytao » Thu, 2013-06-27 13:15
1
1,911 by ytao
Mon, 2014-04-21 06:48
Normal topic Trouble running Enzyme Design application
by danaitop » Thu, 2016-08-11 13:34
2
1,910 by rmoretti
Mon, 2016-09-05 11:10
Normal topic modeling 4 linkers between 2 domains
by pdbb » Thu, 2013-05-16 08:23
1
1,900 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to run my openmp programe in rosetta3.3?
by lihowe » Mon, 2012-02-27 23:43
1
1,899 by smlewis
Mon, 2014-04-21 06:47
Normal topic Checkpoint with rosetta3.4
by AmelieH » Mon, 2014-12-01 15:51
1
1,899 by rmoretti
Wed, 2014-12-03 19:07
Normal topic flexpepdock_score_only
by ays » Sun, 2014-09-21 06:17
2
1,898 by ays
Tue, 2014-09-30 08:31
Normal topic RosettaScripts - SetupNCS mover
by felipet » Fri, 2016-03-25 12:42
2
1,896 by rmoretti
Fri, 2016-04-29 08:26
Normal topic cartesian_ddg output
by cossio » Thu, 2018-10-11 14:58
2
1,893 by cossio
Fri, 2018-10-12 04:43
Normal topic ligand conformer generation for enzyme design
by bo » Mon, 2013-02-11 16:51
1
1,889 by smlewis
Mon, 2014-04-21 06:47
Normal topic Missing atoms and cannot find atom pose when refining ligand position with EM density
by BuddySphinx » Mon, 2018-12-31 16:22
2
1,876 by e3lm
Tue, 2021-09-14 10:02
Normal topic Enzyme design output silent file and score file
by deltag » Fri, 2012-09-28 13:07
1
1,875 by rmoretti
Mon, 2014-04-21 06:47
Normal topic molfile_to_params script error
by pablogalazdavison » Tue, 2015-07-07 21:22
1
1,873 by rmoretti
Tue, 2015-07-14 14:59
Normal topic KIC with fragments versus Next generation KIC
by Loki01 » Fri, 2018-09-07 05:06
3
1,870 by smlewis
Mon, 2018-09-10 11:48
Normal topic does the loop kinetic support MPI now?
by albumns » Fri, 2012-10-26 06:31
2
1,867 by smlewis
Mon, 2014-04-21 06:47
Normal topic New CSRosetta toolbox
by sn » Mon, 2017-04-24 12:42
3
1,866 by rmoretti
Tue, 2017-04-25 06:41
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
1,861 by rmoretti
Tue, 2017-08-22 09:03
Normal topic Problem with AtomPair constraint
by jarek » Tue, 2012-10-09 07:28
1
1,856 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking to TM protein plus lipid bilayer
by renedominik » Tue, 2019-03-12 06:58
3
1,852 by renedominik
Tue, 2020-02-18 01:36
Normal topic RosettaMP: issue with generating .lips4 file
by ksy141 » Mon, 2019-01-21 17:17
5
1,849 by noahC_noahDo
Fri, 2020-11-20 11:29
Normal topic rosetta 3.3 - antibody
by ron amon » Mon, 2014-07-21 00:44
1
1,836 by rmoretti
Mon, 2014-07-21 10:51
Normal topic Space Swap!!!
by jrcf » Sun, 2016-02-14 11:43
2
1,835 by jrcf
Mon, 2016-02-15 17:59
Normal topic Packstat score in InterfaceAnalyzer
by Vedasheersh » Fri, 2017-01-27 06:21
2
1,822 by smlewis
Fri, 2017-01-27 07:20
Normal topic creating compound task mover
by aaj » Wed, 2016-02-24 04:48
2
1,818 by aaj
Wed, 2016-02-24 07:37
Normal topic membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template?
by fglaser » Thu, 2011-04-07 07:57
0
1,812 by fglaser
Mon, 2014-04-21 06:47
Normal topic Enzyme Design with additional covalent backbone bonds
by mwfranklin » Wed, 2016-08-03 10:23
1
1,812 by rmoretti
Mon, 2016-09-05 11:29
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
0
1,803 by lanselibai
Thu, 2015-01-29 00:50
Normal topic Altering substrate specificity
by bp » Thu, 2016-12-22 02:45
2
1,801 by bp
Thu, 2016-12-22 07:54
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
0
1,796 by fred
Mon, 2014-04-21 06:47
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Mon, 2016-07-25 13:35
1
1,791 by gsuchunli
Mon, 2016-07-25 13:56
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
0
1,783 by brspurri
Mon, 2014-04-21 06:47
Normal topic Warnings during relax
by cossio » Thu, 2018-10-11 14:42
2
1,778 by rmoretti
Mon, 2019-11-04 13:56
Normal topic Regarding the efficiency of the new low resolution ligand-docking movement “Transform”.
by Martin Floor » Mon, 2017-05-15 09:19
2
1,773 by Martin Floor
Mon, 2017-05-15 11:13
Normal topic Antibody Docking application
by Maryam_tabasinezhad » Sat, 2015-09-05 09:58
1
1,771 by jadolfbr
Wed, 2015-09-09 12:35
Normal topic Getting error with Rosetta "antibody.linuxgccrelease" command
by Sunyp_IM » Mon, 2017-08-07 19:40
1
1,762 by smlewis
Tue, 2017-08-15 23:19
Normal topic DNA Interface design
by zadie1118 » Wed, 2011-06-22 07:05
0
1,759 by zadie1118
Mon, 2014-04-21 06:47
Normal topic Collecting all decoys from batch files
by aep » Sun, 2016-08-07 12:23
2
1,759 by aep
Sat, 2016-08-13 13:03
Normal topic Behavior of nstruct
by johnnytam100 » Wed, 2019-05-15 22:22
3
1,757 by johnnytam100
Tue, 2019-05-21 20:48
Normal topic cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else?
by dantimatter » Wed, 2019-10-16 14:59
5
1,755 by dantimatter
Wed, 2019-10-30 09:43
Normal topic cluster.linuxgccrelease Killed error
by samuelrpita » Fri, 2015-11-20 05:56
1
1,748 by rmoretti
Tue, 2015-11-24 16:07
Normal topic how to pick fragments for a transmembrane protein
by tevang » Mon, 2012-05-28 06:52
1
1,745 by tevang
Mon, 2014-04-21 06:47
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