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Rosetta 3 - General
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FAQ by admin » Mon, 2010-08-30 04:16 |
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7,910 |
by admin Fri, 2015-09-04 16:17 |
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B3-protein design using rosettaScript movers by straore » Mon, 2015-03-16 05:05 |
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2,870 |
by straore Fri, 2015-04-17 01:54 |
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[Question] How do the <FILTERS> confidence work? by jrom » Wed, 2024-01-24 10:25 |
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223 |
by rmoretti Wed, 2024-01-24 11:55 |
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[Mover] is not known to the MoverFactory by Jhreed » Fri, 2016-08-05 12:23 |
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4,261 |
by msardejani Sun, 2016-08-07 17:49 |
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[dev] Using h-bonding values in new energy term by ipetrik_ambry » Wed, 2017-03-01 11:33 |
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3,694 |
by ipetrik_ambry Thu, 2017-03-02 15:35 |
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[dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation by ipetrik_ambry » Thu, 2018-01-18 12:26 |
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1,741 |
by rmoretti Tue, 2018-01-30 08:29 |
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[dev] not seeing energy in pose row for new energy term in design by ipetrik_ambry » Fri, 2017-03-03 13:16 |
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2,020 |
by ipetrik_ambry Tue, 2017-03-14 14:09 |
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[dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing? by ipetrik_ambry » Mon, 2017-10-30 17:03 |
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1,111 |
by ipetrik_ambry Mon, 2017-10-30 17:03 |
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[dev] determine which score_type's enabled in create_energy_method? by ipetrik_ambry » Fri, 2017-10-27 15:37 |
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2,830 |
by rmoretti Mon, 2017-10-30 12:02 |
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[ WARNING ] missing an atom: 1 H that depends on a nonexistent polymer connection! by Jane_002 » Tue, 2023-08-08 21:07 |
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559 |
by Jane_002 Tue, 2023-08-08 21:07 |
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Your compiler does not have full support for C++ll regex, and therefore can't suport RegEx_based_CDR_Detector/antitody grafting. by ldx022 » Thu, 2023-03-09 17:03 |
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1,092 |
by ldx022 Sat, 2023-03-11 16:53 |
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XML schema file taken from Rosie docking giving errors in Rosetta Scripts by Delfosse57 » Mon, 2022-07-18 10:51 |
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1,254 |
by rmoretti Mon, 2022-07-18 11:56 |
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Write PDB with multiple side-chain configurations by pachecoj » Tue, 2014-09-30 21:42 |
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3,052 |
by pachecoj Thu, 2014-10-09 18:15 |
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Working through tutorials: expected output scorces differ from calculated results by j.schmue » Sat, 2020-01-18 13:16 |
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1,845 |
by j.schmue Tue, 2020-01-28 13:31 |
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Will Rosetta Flexpepdock be adequate for this for now.? by monos_morpheus » Wed, 2011-04-27 19:10 |
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2,555 |
by londonir Mon, 2014-04-21 06:47 |
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why not scoring function in loop model? by albumns » Thu, 2011-01-06 00:13 |
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2,289 |
by smlewis Mon, 2014-04-21 06:47 |
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Why I_sc of Rosetta 2016.02 and 2018.21 are so different? by eminegenetics » Mon, 2018-07-16 12:51 |
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2,419 |
by eminegenetics Wed, 2018-07-18 13:48 |
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Why is it called Rosetta? by cossio » Sun, 2016-03-13 14:28 |
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2,009 |
by smlewis Sun, 2016-03-13 15:25 |
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Why I have the different result with the same initial condition? by mikelin » Sat, 2011-06-04 11:35 |
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4,021 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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why energy is positive? by albumns » Tue, 2014-12-23 00:05 |
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4,465 |
by rmoretti Mon, 2015-02-09 11:21 |
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Why does the sum of the per-residue total energy not match the whole score? by matteoferla » Fri, 2021-07-09 08:36 |
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1,640 |
by matteoferla Mon, 2021-07-12 02:23 |
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why docking results are different? by albumns » Sat, 2010-12-18 23:53 |
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3,516 |
by smlewis Mon, 2014-04-21 06:47 |
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Why are all source codes .gz and not .tgz by jasnyderjr » Tue, 2016-12-20 21:23 |
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10,157 |
by smlewis Thu, 2016-12-22 13:11 |
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Why are 'fa_rep' and 'fa_intra_rep' higher in 'ref2015_soft.wts' than in 'ref2015.wts'? by JW_24 » Tue, 2023-01-24 04:40 |
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826 |
by JW_24 Tue, 2023-01-24 14:52 |
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Which rosetta for antibody modelling? by oppopomoz » Wed, 2013-04-24 09:10 |
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3,070 |
by jadolfbr Mon, 2014-04-21 06:47 |
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which modules support MPI now? by albumns » Fri, 2013-11-08 01:32 |
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2,204 |
by rmoretti Mon, 2014-04-21 06:48 |
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which make_fragments.pl by renedominik » Mon, 2018-06-04 08:58 |
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3,369 |
by renedominik Sat, 2018-07-07 03:03 |
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Which application/mover should I use to evaluate the ddg between apo enzyme and enzyme binding with transition state? by JasonIsaac » Wed, 2023-02-22 18:36 |
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495 |
by JasonIsaac Wed, 2023-02-22 18:36 |
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Where to find old version of Rosetta with git version number by mao_x » Wed, 2019-08-07 01:22 |
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2,437 |
by mao_x Thu, 2019-08-08 01:37 |
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Where is the flag -preserve_input_cb? by mdyini » Wed, 2011-03-09 14:40 |
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2,013 |
by smlewis Mon, 2014-04-21 06:47 |
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Where is Sicdock application now? Can I find a substitute？ by JasonIsaac » Sun, 2022-11-13 03:41 |
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1,079 |
by rmoretti Mon, 2022-11-14 07:27 |
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where is PyIgClassfiy.py ? by mxp » Tue, 2020-07-07 23:57 |
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1,770 |
by mxp Wed, 2020-07-08 23:25 |
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where do new .params files go? by einew » Wed, 2011-01-05 12:09 |
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2,397 |
by smlewis Mon, 2014-04-21 06:47 |
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When does Rosetta switch from centroid to FA mode? by MarkW » Fri, 2015-07-03 04:48 |
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3,563 |
by rmoretti Sun, 2015-07-05 14:28 |
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What's the unit of Rosetta energy function? by Run » Tue, 2014-06-24 00:44 |
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6,242 |
by rmoretti Tue, 2014-07-01 12:45 |
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what's the difference between recovery and sequence identity by Lindsay » Thu, 2012-04-26 05:46 |
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4,956 |
by smlewis Mon, 2014-04-21 06:47 |
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What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize? by brspurri » Tue, 2013-02-12 08:19 |
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7,211 |
by smlewis Mon, 2014-04-21 06:47 |
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What should I do to lower down the fa_sol scores? by JasonIsaac » Mon, 2022-12-05 18:57 |
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588 |
by JasonIsaac Mon, 2022-12-05 18:57 |
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what rotamer lib is used in rosetta3.5? by Lindsay » Thu, 2014-02-06 16:11 |
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6,455 |
by rmoretti Fri, 2014-03-28 09:03 |
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what option should I use if I want to use the dfire in 3.4 by Lindsay » Thu, 2012-04-12 05:19 |
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3,730 |
by smlewis Mon, 2014-04-21 06:47 |
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what kind of focefield does Rosetta based on? by albumns » Tue, 2010-07-06 11:08 |
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2,171 |
by smlewis Mon, 2014-04-21 06:47 |
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What is virtual atom means in a params file and how to generate it？ by JasonIsaac » Fri, 2022-11-04 04:53 |
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1,566 |
by JasonIsaac Mon, 2022-11-07 19:15 |
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what is the xxx.static.linuxgccrelease? by syoifczeri » Sat, 2015-10-31 04:09 |
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6,128 |
by syoifczeri Mon, 2015-11-02 03:59 |
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What is the total_score that relax outputs? by cossio » Tue, 2014-12-02 13:50 |
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5,051 |
by cossio Thu, 2014-12-04 05:41 |
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what is the relationship and difference between Rosetta 3.0 and miniRosetta by jarod » Thu, 2010-05-06 20:57 |
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2,936 |
by jarod Mon, 2014-04-21 06:47 |
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What is the general protocol for antibody-antigen docking without the native antibody-antigen structures? by Sunyp_IM » Sun, 2017-08-13 05:42 |
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8,440 |
by smlewis Tue, 2017-08-29 08:56 |
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What is the expected behaviour when minimizing a jump edge? by bio_james » Wed, 2017-12-13 09:13 |
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1,154 |
by bio_james Wed, 2017-12-13 09:13 |
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What is the different between dun08 and default dunbrack library? by SunH » Mon, 2010-11-08 06:14 |
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2,469 |
by smlewis Mon, 2014-04-21 06:47 |
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What is the difference between F and S labeled decoys? by PaulaBanks » Tue, 2013-08-27 06:09 |
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3,504 |
by PaulaBanks Mon, 2014-04-21 06:48 |
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What is the best way to make a residue-specific SASA constraint? by jmaly » Thu, 2020-01-23 16:40 |
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2,400 |
by matteoferla Wed, 2020-01-29 12:18 |
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What is the best protocol to predict the missing residues in X-ray crystallisation? by lanselibai » Sun, 2019-12-29 04:44 |
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1,384 |
by matteoferla Wed, 2020-01-01 04:30 |
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what is minirosetta by Lindsay » Tue, 2012-04-10 07:48 |
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9,853 |
by Lindsay Mon, 2014-04-21 06:47 |
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What is a "silent file"? by lanselibai » Mon, 2014-09-22 02:43 |
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7,084 |
by lanselibai Mon, 2014-09-22 08:13 |
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what is 05.2009 ideal coordinates by Lindsay » Tue, 2014-09-23 20:36 |
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3,564 |
by rmoretti Mon, 2014-09-29 13:45 |
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What is "residue packing", "repacking", and so on? by cossio » Wed, 2014-12-03 08:49 |
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3,732 |
by cossio Wed, 2014-12-03 14:51 |
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What is "repack", "prepack"? by cossio » Wed, 2015-11-04 17:59 |
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6,017 |
by rmoretti Tue, 2015-11-10 11:52 |
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what is "-relax:sequence" ? by Anonymous » Fri, 2012-06-08 06:31 |
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9,241 |
by smlewis Mon, 2014-04-21 06:47 |
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what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
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1,071 |
by jmaly Wed, 2020-09-02 16:16 |
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Weird results from flexpepdock MPI by gerdos » Fri, 2016-06-24 01:18 |
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3,183 |
by smlewis Thu, 2016-06-30 08:44 |
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weird prolines with hydroxyls from fixbb.linuxgccrelease by louisclark » Wed, 2010-08-25 15:01 |
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2,846 |
by louisclark Mon, 2014-04-21 06:47 |
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Weekly releases for commercial users? by rjacak » Tue, 2022-03-22 07:48 |
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1,231 |
by rjacak Thu, 2022-03-31 10:53 |
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Webinar? by IgaK » Thu, 2009-11-19 03:26 |
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1,569 |
by IgaK Mon, 2014-04-21 06:47 |
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Warning when running cluster program by Anonymous » Fri, 2012-06-15 02:39 |
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11,701 |
by Anonymous Mon, 2014-04-21 06:47 |
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Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation by jurkm » Mon, 2011-05-02 03:00 |
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3,260 |
by smlewis Mon, 2014-04-21 06:47 |
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Using specific rotamers by sahn97 » Fri, 2022-08-26 13:45 |
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759 |
by rmoretti Fri, 2022-08-26 14:51 |
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Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure by bharat_46010 » Sun, 2011-01-23 05:22 |
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7,521 |
by dgront Mon, 2014-04-21 06:47 |
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Using Relax to asses conformational space by glapidoth11 » Sat, 2011-07-30 05:09 |
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2,951 |
by smlewis Mon, 2014-04-21 06:47 |
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Using Patches in Rosetta by JS » Wed, 2010-03-10 13:32 |
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8,234 |
by JS Mon, 2014-04-21 06:47 |
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Using NCAAs in protocols with native heme proteins by htorres » Wed, 2018-01-24 08:32 |
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2,770 |
by htorres Mon, 2018-02-05 06:53 |
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Using NCAA by ate » Sat, 2021-05-01 02:52 |
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975 |
by ate Sat, 2021-05-01 02:52 |
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Using NCAA by ate » Sat, 2021-05-01 02:22 |
0 |
901 |
by ate Sat, 2021-05-01 02:22 |
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Using mode=profile by Biokhar » Fri, 2012-07-06 00:29 |
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3,786 |
by scombs Mon, 2014-04-21 06:47 |
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Using logic in resfile, Rosetta Scripts by tsztain » Wed, 2017-03-22 13:50 |
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1,808 |
by smlewis Wed, 2017-03-22 14:02 |
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using full atom constraint in docking by rohi » Thu, 2020-10-15 10:28 |
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1,055 |
by rohi Thu, 2020-10-15 10:28 |
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Using FastSAXS Scoring Protocol by jurkm » Tue, 2011-09-20 07:40 |
0 |
1,865 |
by jurkm Mon, 2014-04-21 06:47 |
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Using Degenerate Protons in Rosetta3.x by jurkm » Wed, 2011-06-08 03:25 |
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11,316 |
by jurkm Mon, 2014-04-21 06:47 |
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using defined WATERS in PACKING by ast » Wed, 2012-01-11 09:11 |
4 |
4,383 |
by smlewis Mon, 2014-04-21 06:47 |
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Using D-amino acids in Rosetta docking by moehle » Wed, 2011-06-01 00:49 |
7 |
8,593 |
by moehle Mon, 2014-04-21 06:47 |
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using constraints with AbinitioRelax (Rosetta 3.1) by ndousis » Fri, 2009-12-18 08:56 |
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8,749 |
by ndousis Mon, 2014-04-21 06:47 |
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Using a broker file with relax by Al52 » Mon, 2015-11-30 20:24 |
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2,699 |
by Al52 Tue, 2015-12-01 18:22 |
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Using 2 non-standard residues in one run by einew » Tue, 2011-03-08 21:24 |
5 |
6,643 |
by einew Mon, 2014-04-21 06:47 |
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use_truncated_termini not working in combination with params files by georg » Thu, 2020-03-26 13:14 |
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1,370 |
by matteoferla Tue, 2020-04-14 03:36 |
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Updated publications/details on Rosetta score function? by nitroamos » Tue, 2009-10-20 19:48 |
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4,935 |
by rmoretti Mon, 2015-03-30 14:43 |
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Unrecognized residue Glc by cgautier » Tue, 2015-03-31 02:20 |
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6,434 |
by rmoretti Thu, 2015-04-16 10:09 |
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Unrecognized D-Leu name / C-terminal ACE by almeida85 » Thu, 2022-08-11 07:43 |
1 |
725 |
by almeida85 Fri, 2022-08-12 05:56 |
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Unrecognized atom parameter with denovo_density by kalabharath » Mon, 2020-06-29 06:59 |
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955 |
by kalabharath Mon, 2020-06-29 06:59 |
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Unrecognized aa NO3 by JadAbbass » Sun, 2013-07-14 10:48 |
3 |
4,364 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Unrecognised resiudues when rescoring PDB files generated by enzyme_design under MPI by linucks » Tue, 2018-02-13 03:41 |
4 |
4,382 |
by linucks Fri, 2018-02-23 08:08 |
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unknown constraint function type: AtomPair ? by jiongzhang » Sun, 2012-07-15 02:13 |
4 |
4,477 |
by jiongzhang Mon, 2014-04-21 06:47 |
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Unknow atom_name: LYS 1HZ in enzdes after match by petrikigor » Fri, 2012-10-19 09:35 |
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3,352 |
by rmoretti Mon, 2014-04-21 06:47 |
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unit and scientific tests by tricia » Sat, 2009-05-09 23:29 |
1 |
2,134 |
by smlewis Mon, 2014-04-21 06:47 |
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uninstalling or rebuilding rosetta by rlwoltz » Thu, 2013-04-11 11:45 |
5 |
7,879 |
by rlwoltz Mon, 2014-04-21 06:47 |
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unidentifiable C++ exception in both linux and window. by wajidarshad » Tue, 2015-10-27 08:12 |
1 |
2,025 |
by rmoretti Tue, 2015-10-27 08:46 |
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Unexpected length of light chain FR1 by mgupta » Fri, 2022-12-09 01:03 |
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642 |
by mgupta Fri, 2022-12-09 01:03 |
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Undocumented changes in BackrubDD by abhi_pe_acharya » Mon, 2018-07-16 00:24 |
2 |
2,096 |
by abhi_pe_acharya Sun, 2018-08-05 22:03 |
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undefined symbol: ZN9CifString12UnknownValueE error meaning? by aniyaz » Wed, 2023-01-04 08:37 |
3 |
1,291 |
by aniyaz Wed, 2023-01-11 01:24 |
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Unable to download Rosetta by Yair Tenorio » Mon, 2023-10-23 11:48 |
2 |
438 |
by Yair Tenorio Mon, 2023-10-23 12:29 |
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Unable to create col_complex.pdb file by sayan500 » Tue, 2019-07-30 22:08 |
1 |
1,447 |
by rmoretti Mon, 2019-08-26 14:52 |
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UBQ chemically conjugated docking error by cheyuk » Fri, 2015-09-18 06:57 |
4 |
4,678 |
by cheyuk Sun, 2015-09-20 02:08 |
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tyrosine structure error by dave » Mon, 2012-04-30 04:38 |
1 |
2,198 |
by frichter Mon, 2014-04-21 06:47 |
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