You are here
Rosetta 3 - General
Log in to post new content in the forum.
| Topic / Topic starter | Replies |
Views |
Last post | |
|---|---|---|---|---|
|
Modeling by hwillis » Wed, 2009-08-12 11:07 |
1 |
2,037 |
by frichter Mon, 2014-04-21 06:47 |
|
|
Atom_.cc line 304 by fred » Thu, 2014-09-11 12:04 |
1 |
2,037 |
by rmoretti Fri, 2014-09-12 09:11 |
|
|
demo documentation by lshi » Fri, 2009-08-28 08:51 |
1 |
2,037 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Get nchi for heavy atoms by pachecoj » Tue, 2014-11-04 19:04 |
1 |
2,040 |
by rmoretti Tue, 2014-11-11 13:22 |
|
|
docking using rosetta3.1 and rosetta2.3 leads to very different results by lqzhang » Thu, 2010-01-14 11:54 |
1 |
2,040 |
by sid Mon, 2014-04-21 06:47 |
|
|
idealization error by albumns » Mon, 2011-02-07 01:28 |
1 |
2,045 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
PDB output sum by enoee » Fri, 2010-07-16 12:29 |
1 |
2,046 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
what kind of focefield does Rosetta based on? by albumns » Tue, 2010-07-06 11:08 |
1 |
2,048 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How did you begin to learn Rosetta? by mdeklotz » Mon, 2018-07-30 10:08 |
1 |
2,050 |
by jkleman Tue, 2018-07-31 13:19 |
|
|
"Illegal Instruction" for particular Movers/Filters by Jhreed » Thu, 2016-08-11 12:59 |
1 |
2,050 |
by smlewis Thu, 2016-08-11 13:16 |
|
|
optimisation of a protein-protein interface by sdh_h » Thu, 2017-05-04 05:06 |
1 |
2,054 |
by rmoretti Mon, 2017-05-15 09:03 |
|
|
how to do ensemble docking using rosetta3.1 by lqzhang » Mon, 2010-01-11 10:31 |
1 |
2,060 |
by sid Mon, 2014-04-21 06:47 |
|
|
how to set the output name for fixbb design by Lindsay » Mon, 2012-04-30 09:32 |
1 |
2,061 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ERROR: Unable to open weights. by libai2098 » Thu, 2010-12-30 17:54 |
1 |
2,062 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Problems in installing Rosetta3 in Red Hat Linux by jjz2009 » Mon, 2009-08-24 19:16 |
1 |
2,066 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
null rosetta energy/score by fred » Tue, 2011-10-18 10:31 |
1 |
2,071 |
by fred Mon, 2014-04-21 06:47 |
|
|
opt-E Reference energies by vijayan » Wed, 2013-08-07 07:35 |
1 |
2,071 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
python problem? by albumns » Fri, 2012-03-02 11:03 |
1 |
2,075 |
by albumns Mon, 2014-04-21 06:47 |
|
|
Parallel Installation of ROSETTA3.1 by anirbanzz » Mon, 2009-12-07 21:09 |
1 |
2,078 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Do Rosetta support hydroxide(OH-) and oxide(O2-) params? by dasdevashishdas » Thu, 2018-08-16 21:15 |
2 |
2,079 |
by dasdevashishdas Thu, 2018-08-23 18:02 |
|
|
ERROR: Illegal value for real option -docking:dock_pert specified: 8 by libai2098 » Tue, 2011-03-15 02:26 |
1 |
2,079 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
local refinement by mahajanr » Mon, 2010-07-19 15:04 |
1 |
2,083 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
which modules support MPI now? by albumns » Fri, 2013-11-08 01:32 |
1 |
2,084 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
is the RosettaNMR protocol available in Rosetta 3.x? by murgantia » Wed, 2011-01-26 00:39 |
1 |
2,085 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
rosetta@home in local PC farm by jarod » Wed, 2010-05-05 18:31 |
1 |
2,085 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to convert fragments to PDB format? by JadAbbass » Wed, 2015-08-19 04:05 |
1 |
2,085 |
by rmoretti Wed, 2015-09-02 12:48 |
|
|
ligand flexibility by dave » Thu, 2015-02-12 08:48 |
1 |
2,087 |
by rmoretti Wed, 2015-02-18 09:17 |
|
|
Rosetta (antibody_designer) performance by Kihang _Youn » Wed, 2022-03-02 00:48 |
7 |
2,088 |
by Kihang _Youn Thu, 2022-03-10 16:30 |
|
|
Cluster decoys after running PlexPepDock by phanvy » Thu, 2014-06-19 06:03 |
1 |
2,091 |
by nawsad Fri, 2014-06-20 02:48 |
|
|
Bug in LoopMover_Refine_Backrub.cc ? by SunH » Wed, 2010-12-15 00:08 |
1 |
2,091 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
segfault in membrane_abinitio2.mpi by siegert » Sat, 2014-06-14 15:56 |
1 |
2,093 |
by yarovoy Wed, 2016-03-30 12:37 |
|
|
tyrosine structure error by dave » Mon, 2012-04-30 04:38 |
1 |
2,095 |
by frichter Mon, 2014-04-21 06:47 |
|
|
Error using ddg_monomer application (Assertion `pose.residue(resnum).name1() == wt` failed) by sgaray » Thu, 2021-06-24 14:47 |
2 |
2,097 |
by sgaray Fri, 2021-06-25 11:26 |
|
|
How to design a stand-alone loop from a binding interface? by guangdianzi3 » Fri, 2011-02-11 21:11 |
1 |
2,097 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Memory leak? Memory consumption rises quickly when using JD2 app(s) by yuvals » Mon, 2014-10-06 11:35 |
1 |
2,103 |
by yuvals Mon, 2014-10-06 15:02 |
|
|
rosetta compile by MA » Wed, 2017-04-26 00:46 |
2 |
2,107 |
by MA Thu, 2017-04-27 18:53 |
|
|
Does Rosetta have a class diagram for each class in the source code? by ylwang » Thu, 2019-11-21 04:24 |
3 |
2,107 |
by ylwang Sat, 2019-11-23 06:26 |
|
|
ab initio protein structure prediction by croshong » Wed, 2009-12-16 23:25 |
1 |
2,108 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Error running GenericMonteCarlo mover within MultipleOutputWrapper mover by abhi_pe_acharya » Mon, 2018-04-16 04:58 |
1 |
2,109 |
by abhi_pe_acharya Thu, 2018-04-19 03:49 |
|
|
Structure refinement with RDC constraint by shushunur » Thu, 2018-01-18 00:44 |
1 |
2,112 |
by rmoretti Tue, 2018-01-30 09:08 |
|
|
Computing pairwise energies for rotamers by pachecoj » Sat, 2014-05-03 17:52 |
1 |
2,113 |
by rmoretti Mon, 2014-05-12 07:50 |
|
|
Does Rosetta 3.1 have the 9999 limitation? by wtscrystal » Sat, 2009-11-07 01:18 |
1 |
2,117 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Can Rosetta generate proteins with sidechains ? by wszjzhang » Fri, 2010-01-08 08:26 |
1 |
2,118 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Fitting a structure with an unrecognized residue to an EM density by ahmadkhalifa » Tue, 2017-12-05 14:44 |
2 |
2,122 |
by ahmadkhalifa Wed, 2017-12-06 12:30 |
|
|
Output fasta of enzdes generated pdbs by eyong123 » Tue, 2015-05-19 08:07 |
1 |
2,125 |
by rmoretti Mon, 2015-05-25 11:07 |
|
|
H3 modelling scoring function by aneamtu » Wed, 2017-12-27 23:10 |
2 |
2,126 |
by aneamtu Mon, 2018-01-08 23:49 |
|
|
question about protein docking results by albumns » Thu, 2010-11-25 08:19 |
1 |
2,126 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Running Backrub by enoee » Wed, 2010-10-27 07:51 |
1 |
2,129 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
What is the best way to make a residue-specific SASA constraint? by jmaly » Thu, 2020-01-23 16:40 |
2 |
2,131 |
by matteoferla Wed, 2020-01-29 12:18 |
|
|
Non-ideal residue detected by cnelson » Thu, 2010-07-01 12:20 |
1 |
2,135 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
backrub and design by jtmacd » Thu, 2009-06-04 08:44 |
1 |
2,137 |
by jtmacd Mon, 2014-04-21 06:47 |
|
|
Symmetric Docking (Making Trimer from Monomerics Units) by sdg_lab » Thu, 2012-04-12 09:21 |
1 |
2,138 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
dock_mcm not found by libai2098 » Mon, 2011-03-14 00:02 |
1 |
2,139 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
make_fragments.pl without sparks by nannemdp » Mon, 2014-06-09 13:18 |
1 |
2,141 |
by rmoretti Tue, 2014-06-10 11:34 |
|
|
question about the exposed strand results in beta_strand_homodimer_design demo by szypanther » Wed, 2014-06-04 00:47 |
1 |
2,148 |
by rmoretti Mon, 2014-06-09 10:05 |
|
|
How to make Rosetta's sampling more aggresive ? by jiongzhang » Mon, 2012-03-12 11:04 |
1 |
2,151 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Does comparative modeling works for membrane proteins by justin » Wed, 2012-03-21 04:58 |
1 |
2,152 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ab initio folding part of a protein by attesor » Wed, 2013-03-06 04:39 |
1 |
2,155 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
snugdock and rosetta 3.2?? by sudhar » Thu, 2011-02-24 00:36 |
1 |
2,159 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Compilation in Mac OS 10.6 by rjn » Thu, 2010-02-18 12:35 |
1 |
2,160 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
The algorithm of adding missing Hydrogen to a backbone by ac.research » Tue, 2018-03-06 03:48 |
1 |
2,162 |
by rmoretti Sat, 2018-03-17 10:43 |
|
|
Protein Docking Error by ac.research » Thu, 2017-08-17 02:57 |
2 |
2,162 |
by ac.research Fri, 2017-08-18 00:53 |
|
|
dock & design by sdh_h » Fri, 2016-09-02 03:07 |
1 |
2,163 |
by rmoretti Mon, 2016-09-05 09:39 |
|
|
Helix at loop site by berk » Fri, 2013-05-31 07:04 |
1 |
2,164 |
by smlewis Mon, 2014-04-21 06:48 |
|
|
Performance improvement in AbinitioRelax and relax 3.2 ??? by smg3d » Sun, 2011-02-06 08:59 |
1 |
2,170 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
NMR / NOE related tools in 3.2 ? by smg3d » Sun, 2011-02-06 06:11 |
1 |
2,173 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Clarify ProteinInterfaceDesign “randomness” by tsztain » Wed, 2019-02-27 09:41 |
3 |
2,176 |
by rmoretti Sat, 2019-03-30 12:12 |
|
|
why not scoring function in loop model? by albumns » Thu, 2011-01-06 00:13 |
1 |
2,181 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Where to find old version of Rosetta with git version number by mao_x » Wed, 2019-08-07 01:22 |
2 |
2,184 |
by mao_x Thu, 2019-08-08 01:37 |
|
|
ERROR: FragmentIO: could not open file by ahmadkhalifa » Wed, 2018-01-31 13:30 |
1 |
2,185 |
by rmoretti Wed, 2018-01-31 14:57 |
|
|
Parallel computing? by mansi » Thu, 2010-08-19 08:39 |
1 |
2,186 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Bug in cluster? by nitroamos » Mon, 2011-11-21 12:53 |
1 |
2,192 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Ineffective Constraints by Sandy » Tue, 2017-09-05 19:36 |
2 |
2,193 |
by CameronJA Wed, 2022-01-19 20:50 |
|
|
mcm for Docking in Rosetta3.1 by dyq » Tue, 2010-01-12 13:44 |
1 |
2,194 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Rosetta groups in Scandinavia by knutjbj » Mon, 2010-11-15 23:50 |
1 |
2,194 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
rosetta nonlocal application by mintseris » Tue, 2013-12-31 13:13 |
1 |
2,195 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
"abinitio" with mpi by al614 » Wed, 2016-10-12 12:17 |
1 |
2,195 |
by rmoretti Fri, 2016-10-14 15:46 |
|
|
How to use Rosetta Position constraint docking? by libai2098 » Mon, 2011-05-09 01:08 |
1 |
2,197 |
by libai2098 Mon, 2014-04-21 06:47 |
|
|
Is CST_Design required for enzdes protocol? by dasdevashishdas » Mon, 2018-09-03 00:51 |
2 |
2,201 |
by dasdevashishdas Thu, 2018-09-27 03:35 |
|
|
ssDNA (aptamer)/protein docking by JulienO » Fri, 2016-05-27 02:25 |
1 |
2,211 |
by rmoretti Tue, 2016-07-12 08:47 |
|
|
Problem with run_lips.pl script by wdyrka » Tue, 2010-09-07 11:07 |
1 |
2,212 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ERROR - PDB's with occupancy field equal '1.0' by khanhbinh » Sun, 2012-09-23 09:38 |
1 |
2,217 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
ratio of conformers and docking output by pramod » Fri, 2014-12-12 12:54 |
1 |
2,217 |
by rmoretti Mon, 2014-12-15 02:37 |
|
|
Calibur not listing cluster members by Swillard » Sun, 2018-07-01 13:07 |
2 |
2,217 |
by benhardy Fri, 2021-05-07 07:22 |
|
|
constraints by lah435 » Sun, 2017-03-12 03:25 |
2 |
2,218 |
by lah435 Mon, 2017-04-03 19:50 |
|
|
Rosetta movie. by exchhattu » Mon, 2009-09-14 21:02 |
1 |
2,219 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Rosetta 3.1 seg faults gcc while compiling on Fedora 11 by jtmacd » Fri, 2009-10-02 05:26 |
1 |
2,223 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Data Check for a newb by ac.research » Sun, 2017-03-12 23:42 |
2 |
2,225 |
by ac.research Fri, 2017-03-31 07:36 |
|
|
Reproducing Robetta AB initio setup by jason-rosetta » Sat, 2014-10-04 04:26 |
1 |
2,225 |
by jadolfbr Fri, 2014-10-31 08:55 |
|
|
Rosetta Antibody: Unable to open file and terminates by denatured » Thu, 2019-12-12 11:26 |
1 |
2,228 |
by denatured Fri, 2019-12-13 11:19 |
|
|
total score by score » Mon, 2010-05-03 02:03 |
1 |
2,228 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Error in Running Symmetry Docking cutpoint. by Jacob » Wed, 2011-06-01 08:21 |
1 |
2,238 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Ligand Docking with Orphan GPCR by marsaa » Thu, 2016-10-13 07:45 |
1 |
2,238 |
by rmoretti Fri, 2016-10-14 16:43 |
|
|
Design with non-canonical amino acids (NCAA) by yinasun » Mon, 2019-08-05 00:34 |
2 |
2,243 |
by matteoferla Thu, 2019-08-22 05:39 |
|
|
How to specify constraints during fold-and-dock? by sarah_b » Tue, 2020-05-12 01:55 |
3 |
2,243 |
by matteoferla Thu, 2020-05-14 07:01 |
|
|
Hydrogen bond detection and shape complementarity by sujigeorge1979 » Fri, 2019-06-14 02:39 |
3 |
2,247 |
by sujigeorge1979 Thu, 2019-06-27 01:30 |
|
|
header pathways not accessable: No such file or directory by rlwoltz » Tue, 2012-09-18 17:44 |
1 |
2,247 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Why I_sc of Rosetta 2016.02 and 2018.21 are so different? by eminegenetics » Mon, 2018-07-16 12:51 |
2 |
2,248 |
by eminegenetics Wed, 2018-07-18 13:48 |
|
|
Binary silent Output file reading problem by wlzhang » Sun, 2014-04-20 17:47 |
1 |
2,249 |
by wlzhang Sun, 2014-04-20 18:17 |
|
|
Question about wrong homology design by mony2182 » Fri, 2014-07-04 10:26 |
1 |
2,250 |
by rmoretti Mon, 2014-07-07 08:08 |
Log in to post new content in the forum.
