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Rosetta 3 - General

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Normal topic Rosetta 3.1 seg faults gcc while compiling on Fedora 11
by jtmacd » Fri, 2009-10-02 05:26
1
1,804 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ab initio structure prediction for long amino acid sequence
by maruhuang » Fri, 2019-08-02 03:38
4
1,805 by maruhuang
Thu, 2019-09-26 18:55
Normal topic Bug in cluster?
by nitroamos » Mon, 2011-11-21 12:53
1
1,805 by smlewis
Mon, 2014-04-21 06:47
Normal topic problem parsing a THR residue
by decrSTL » Wed, 2019-08-21 12:25
4
1,808 by decrSTL
Tue, 2019-08-27 10:24
Normal topic Parallel computing?
by mansi » Thu, 2010-08-19 08:39
1
1,812 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to create a rotamer set that includes all possible rotamers of all possible amino acids
by AyushGoyal » Thu, 2014-11-06 10:37
1
1,813 by smlewis
Fri, 2014-11-07 12:03
Normal topic ERROR - PDB's with occupancy field equal '1.0'
by khanhbinh » Sun, 2012-09-23 09:38
1
1,814 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Does comparative modeling works for membrane proteins
by justin » Wed, 2012-03-21 04:58
1
1,818 by smlewis
Mon, 2014-04-21 06:47
Normal topic Refinement of a PDB structure containing multiple models
by ahmadkhalifa » Wed, 2018-04-18 07:44
3
1,819 by smlewis
Wed, 2018-04-18 19:03
Normal topic Meaning of a couple terms?
by aloshbau » Sun, 2016-02-07 16:48
2
1,822 by aloshbau
Sun, 2016-02-14 20:14
Normal topic mcm for Docking in Rosetta3.1
by dyq » Tue, 2010-01-12 13:44
1
1,824 by smlewis
Mon, 2014-04-21 06:47
Normal topic Explanation of constraint functions?
by aloshbau » Mon, 2015-12-14 22:38
2
1,826 by aloshbau
Mon, 2015-12-14 23:30
Normal topic reporting IteratedConvergence status
by sdh_h » Thu, 2016-08-04 10:05
2
1,829 by sdh_h
Thu, 2016-08-04 11:22
Normal topic Knowledge check on steric effects
by pachecoj » Thu, 2014-10-16 09:13
1
1,830 by rmoretti
Thu, 2014-10-16 10:33
Normal topic why not scoring function in loop model?
by albumns » Thu, 2011-01-06 00:13
1
1,832 by smlewis
Mon, 2014-04-21 06:47
Normal topic Minimizing across jumps
by SenyorDrew » Thu, 2017-07-06 06:26
2
1,832 by SenyorDrew
Thu, 2017-07-06 07:48
Normal topic Question about wrong homology design
by mony2182 » Fri, 2014-07-04 10:26
1
1,838 by rmoretti
Mon, 2014-07-07 08:08
Normal topic InterfaceAnalyzer total score = 0.000
by vmc99 » Wed, 2019-06-12 14:06
3
1,838 by jadolfbr
Wed, 2019-06-12 20:17
Normal topic Rosetta groups in Scandinavia
by knutjbj » Mon, 2010-11-15 23:50
1
1,839 by smlewis
Mon, 2014-04-21 06:47
Normal topic I generated a table of images & info of the premade NCAA params in the database
by matteoferla » Sun, 2020-02-16 06:27
4
1,841 by matteoferla
Sat, 2020-03-21 09:14
Normal topic total score
by score » Mon, 2010-05-03 02:03
1
1,842 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to use Rosetta Position constraint docking?
by libai2098 » Mon, 2011-05-09 01:08
1
1,843 by libai2098
Mon, 2014-04-21 06:47
Normal topic Ambiguous constraints are ignored in ab initio
by mschneid » Wed, 2014-06-18 04:33
1
1,847 by rmoretti
Tue, 2014-07-01 12:21
Normal topic Error message: ArchiveManager spinning down
by Lati » Sun, 2016-01-24 02:42
1
1,848 by smlewis
Sun, 2016-01-24 03:24
Normal topic header pathways not accessable: No such file or directory
by rlwoltz » Tue, 2012-09-18 17:44
1
1,852 by smlewis
Mon, 2014-04-21 06:47
Normal topic Adding centroid .params files for non-canonical residues based on all-atom .params files
by jcminerlanl » Thu, 2017-04-27 09:28
2
1,857 by vmulligan
Thu, 2017-04-27 16:41
Normal topic Rosetta lack of necessary application
by ylwang » Wed, 2018-11-07 01:13
3
1,858 by rmoretti
Wed, 2018-11-21 13:50
Normal topic Problem with run_lips.pl script
by wdyrka » Tue, 2010-09-07 11:07
1
1,860 by smlewis
Mon, 2014-04-21 06:47
Normal topic can not find a residue type that matches the residue HIS_P:NtermProteinFull
by tarsis » Wed, 2017-04-05 08:51
1
1,863 by rmoretti
Fri, 2017-04-14 08:37
Normal topic About RosettaScript examples
by jiongzhang » Thu, 2012-03-08 10:50
1
1,864 by smlewis
Mon, 2014-04-21 06:47
Normal topic All possible mutations
by abdullah_ahmed » Tue, 2011-01-04 02:11
1
1,868 by smlewis
Mon, 2014-04-21 06:47
Normal topic [dev] determine which score_type's enabled in create_energy_method?
by ipetrik_ambry » Fri, 2017-10-27 15:37
3
1,871 by rmoretti
Mon, 2017-10-30 12:02
Normal topic Error in Running Symmetry Docking cutpoint.
by Jacob » Wed, 2011-06-01 08:21
1
1,885 by smlewis
Mon, 2014-04-21 06:47
Normal topic Errors in Interface design  
by Kazu » Thu, 2019-10-31 17:48
4
1,887 by Kazu
Mon, 2020-05-18 10:52
Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56
1
1,889 by jadolfbr
Fri, 2015-02-27 11:08
Normal topic pdb 2 silent with ss information
by kalabharath » Sun, 2013-04-14 20:59
1
1,891 by smlewis
Mon, 2014-04-21 06:47
Normal topic -RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application?
by Karol » Thu, 2016-05-12 06:30
2
1,893 by Karol
Thu, 2016-05-12 07:58
Normal topic MoveMap file for backrub
by jiyongpark.77 » Sat, 2009-07-18 03:53
1
1,900 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to transform a pose from symmetric into non-symmetric?
by msardejani » Tue, 2016-10-04 16:55
2
1,901 by msardejani
Wed, 2016-10-05 10:53
Normal topic Derivative of the Energy function?
by MkM » Fri, 2010-01-15 08:00
1
1,901 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using a broker file with relax
by Al52 » Mon, 2015-11-30 20:24
2
1,909 by Al52
Tue, 2015-12-01 18:22
Normal topic I got the message "bad format in first line of silent file". How do I resolve this?
by monos_morpheus » Thu, 2011-02-03 21:09
1
1,911 by smlewis
Mon, 2014-04-21 06:47
Normal topic backbone-independent density
by SergeyP » Sun, 2016-03-20 04:57
2
1,916 by SergeyP
Thu, 2016-05-05 02:07
Normal topic scorefunction Talaris2013
by dave » Tue, 2015-03-03 02:13
1
1,918 by rmoretti
Thu, 2015-04-02 12:52
Normal topic About Rosetta Scoring Function
by wszjzhang » Wed, 2010-02-03 09:22
1
1,921 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Tue, 2016-01-05 09:39
1
1,926 by achambe
Wed, 2016-01-13 10:46
Normal topic The concept of unsatisfied hydrogen bond
by asbelx » Wed, 2018-04-25 01:32
2
1,930 by asbelx
Thu, 2018-04-26 00:23
Normal topic harmonic_Calphas in RosettaLigand flags.txt
by cpkuntz » Wed, 2010-07-14 08:57
2
1,931 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to add constrains in flexible peptide docking
by kingbo2008 » Fri, 2011-04-29 07:55
1
1,932 by smlewis
Mon, 2014-04-21 06:47
Normal topic Entropy calculation
by abdullah_ahmed » Wed, 2010-12-01 07:52
1
1,933 by smlewis
Mon, 2014-04-21 06:47
Normal topic What is the different between dun08 and default dunbrack library?
by SunH » Mon, 2010-11-08 06:14
1
1,934 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with outputing decoys in the process of AbinitioRelax
by MA » Thu, 2017-07-13 23:27
3
1,934 by rmoretti
Thu, 2017-08-03 08:50
Normal topic where do new .params files go?
by einew » Wed, 2011-01-05 12:09
1
1,938 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generate full symmetric assembly from subsystem
by lj269 » Thu, 2011-04-28 20:04
1
1,942 by IAndre
Mon, 2014-04-21 06:47
Normal topic scoring with omega energy term
by SergeyP » Thu, 2017-03-09 12:03
2
1,942 by SergeyP
Fri, 2017-03-10 11:16
Normal topic start pose and native pose don't match in lengh
by zhisheng » Thu, 2011-12-15 10:23
1
1,943 by smlewis
Mon, 2014-04-21 06:47
Normal topic angle constraints
by gw » Tue, 2011-07-19 07:49
1
1,943 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaHoles in 3.1
by enoee » Thu, 2010-10-14 07:12
1
1,943 by smlewis
Mon, 2014-04-21 06:47
Normal topic Peripheral membrane protein modeling
by Fukiishi » Tue, 2018-10-02 02:09
3
1,945 by matteoferla
Thu, 2018-10-04 01:30
Normal topic Denovo density didn't output a structure
by ahmadkhalifa » Mon, 2018-02-12 08:10
3
1,945 by ylwang
Wed, 2018-11-14 03:03
Normal topic Is the Fold&Dock protocol availabe in Rosetta3.1
by justin » Mon, 2011-01-17 02:41
2
1,956 by smlewis
Mon, 2014-04-21 06:47
Normal topic "unrecognized aa ACT"
by einew » Sat, 2011-08-27 14:58
1
1,957 by smlewis
Mon, 2014-04-21 06:47
Normal topic mode=release compile on a mac-pro , seg faults and bus errors
by dnasmith » Thu, 2010-09-09 16:56
2
1,957 by dnasmith
Mon, 2014-04-21 06:47
Normal topic Score Differences between Ab Initio Scoring and Rescore
by mmarlett » Wed, 2016-06-15 09:14
2
1,959 by mmarlett
Thu, 2016-06-16 07:06
Normal topic How to score the crystal structure?
by vsjasion » Fri, 2011-11-18 15:49
1
1,959 by rmoretti
Mon, 2014-04-21 06:47
Normal topic runtime error
by exchhattu » Wed, 2010-03-03 02:54
2
1,961 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Jump::random_trans strange behavior
by SergeyP » Tue, 2015-11-03 07:56
2
1,963 by SergeyP
Sat, 2015-12-19 05:20
Normal topic ERROR: filtered_alignments.size() > 0
by jhbrown » Tue, 2012-01-17 13:28
2
1,966 by jhbrown
Mon, 2014-04-21 06:47
Normal topic Can rosetta model cyclic peptide?
by Apiwat » Fri, 2014-02-07 02:08
1
1,966 by rmoretti
Tue, 2014-02-11 06:24
Normal topic Is cis-Glycine okay?
by matteoferla » Tue, 2019-11-19 07:26
5
1,968 by matteoferla
Wed, 2019-11-20 02:32
Normal topic Read svn acces or acces to developmen version of rosetta
by knutjbj » Thu, 2010-12-09 17:06
1
1,973 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddG average energy
by dave » Wed, 2013-04-03 03:36
1
1,976 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to site the scoring application in rosetta3.1?
by doranhen » Thu, 2012-07-05 10:07
1
1,978 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fragments for short peptides using Robetta
by renedominik » Wed, 2018-05-16 14:21
3
1,979 by renedominik
Mon, 2018-06-04 00:04
Normal topic Is it possible to use two broker files
by kalabharath » Wed, 2011-06-08 01:01
1
1,982 by smlewis
Mon, 2014-04-21 06:47
Normal topic Snugdock and antibody modelling
by sudhar » Thu, 2010-06-10 08:13
1
1,985 by smlewis
Mon, 2014-04-21 06:47
Normal topic Predict the N-terminal of a protein
by aliaselin » Mon, 2010-11-08 03:23
2
1,986 by smlewis
Mon, 2014-04-21 06:47
Normal topic Possible documentation error
by imurch » Tue, 2012-04-17 00:11
1
1,987 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Intel Compiler and OS X Intel
by bene » Tue, 2009-10-20 10:20
1
1,989 by smlewis
Mon, 2014-04-21 06:47
Normal topic generating 10 lowest energy structures from abinitio
by isengupta13 » Fri, 2010-05-07 11:44
2
1,992 by ndousis
Mon, 2014-04-21 06:47
Normal topic Different weights in the constraints for each stage of AbinitioRelax
by allan.ferrari » Sun, 2017-01-15 04:35
2
1,993 by smlewis
Sun, 2017-01-15 18:10
Normal topic AtomTree::torsion_angle() can't find dof! in match and enzdes
by petrikigor » Fri, 2012-10-19 09:49
1
1,996 by rmoretti
Mon, 2014-04-21 06:47
Normal topic packing option "explicit_h2o" and "solvate"
by SunH » Wed, 2010-11-17 00:03
1
2,001 by smlewis
Mon, 2014-04-21 06:47
Normal topic the problem in making fragments
by croshong » Thu, 2009-12-03 17:15
1
2,008 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta membrane prediction!
by wtscrystal » Tue, 2009-11-17 05:55
0
2,011 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic I used mpirun/mpiexec and it runs same job 32times
by leygkn » Mon, 2020-09-21 00:53
6
2,012 by jadolfbr
Thu, 2020-09-24 10:04
Normal topic problems with cluster program
by umeshghosh » Thu, 2010-04-08 07:45
1
2,014 by smlewis
Mon, 2014-04-21 06:47
Normal topic Running time of Rosetta/FlexPepDock
by gerdos » Thu, 2015-10-15 02:14
2
2,014 by gerdos
Fri, 2015-10-16 03:01
Normal topic Intermediate file insertion
by exchhattu » Wed, 2009-09-02 18:44
2
2,015 by exchhattu
Mon, 2014-04-21 06:47
Normal topic general question about protein docking
by albumns » Mon, 2010-12-13 23:26
1
2,016 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic docking mover(s) in rosetta
by aaj » Mon, 2016-01-25 02:38
2
2,018 by aaj
Mon, 2016-02-22 07:50
Normal topic input secondary structure prediction to AbinitioRelax
by biofisikx » Mon, 2010-08-09 12:36
2
2,018 by biofisikx
Mon, 2014-04-21 06:47
Normal topic Evaluate Docking Result
by byin » Thu, 2014-07-03 11:31
1
2,021 by rmoretti
Wed, 2014-07-16 08:07
Normal topic InterfaceAnalyzer atom subset
by Parker.deWaal » Sun, 2016-03-13 13:41
2
2,025 by rmoretti
Mon, 2016-03-14 07:58
Normal topic Questions on energy oddities
by pachecoj » Wed, 2014-10-15 13:26
2
2,027 by pachecoj
Wed, 2014-10-15 15:12
Normal topic how to relax structure constraining CA in Rosetta3.2?
by albumns » Tue, 2011-02-15 06:15
2
2,031 by smlewis
Mon, 2014-04-21 06:47
Normal topic Chi values for side chains when switching from centroid mode
by MarkW » Fri, 2015-07-03 04:43
2
2,032 by MarkW
Fri, 2015-07-03 15:36
Normal topic Dumb question: Rosetta 3 vs Rosetta++, what's the difference?
by mintseris » Tue, 2013-12-31 13:03
1
2,033 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Number of conformations needed
by JadAbbass » Sun, 2014-02-16 13:21
2
2,035 by JadAbbass
Tue, 2014-02-18 07:27
Normal topic how to docking including HETATM
by tricia » Tue, 2009-05-05 22:03
1
2,037 by smlewis
Mon, 2014-04-21 06:47
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