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Rosetta 3 - General

Topic / Topic starter Replies Viewssort descending Last post
Normal topic ligand flexibility
by dave » Thu, 2015-02-12 08:48
1
1,882 by rmoretti
Wed, 2015-02-18 09:17
Normal topic The algorithm of adding missing Hydrogen to a backbone
by ac.research » Tue, 2018-03-06 03:48
1
1,882 by rmoretti
Sat, 2018-03-17 10:43
Normal topic Structure refinement with RDC constraint
by shushunur » Thu, 2018-01-18 00:44
1
1,882 by rmoretti
Tue, 2018-01-30 09:08
Normal topic which modules support MPI now?
by albumns » Fri, 2013-11-08 01:32
1
1,886 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Design with non-canonical amino acids (NCAA)
by yinasun » Mon, 2019-08-05 00:34
2
1,887 by matteoferla
Thu, 2019-08-22 05:39
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
0
1,890 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic Parallel Installation of ROSETTA3.1
by anirbanzz » Mon, 2009-12-07 21:09
1
1,893 by smlewis
Mon, 2014-04-21 06:47
Normal topic Protein Docking Error
by ac.research » Thu, 2017-08-17 02:57
2
1,894 by ac.research
Fri, 2017-08-18 00:53
Normal topic ERROR: Unable to open weights.
by libai2098 » Thu, 2010-12-30 17:54
1
1,894 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster decoys after running PlexPepDock
by phanvy » Thu, 2014-06-19 06:03
1
1,896 by nawsad
Fri, 2014-06-20 02:48
Normal topic python problem?
by albumns » Fri, 2012-03-02 11:03
1
1,897 by albumns
Mon, 2014-04-21 06:47
Normal topic Output fasta of enzdes generated pdbs
by eyong123 » Tue, 2015-05-19 08:07
1
1,898 by rmoretti
Mon, 2015-05-25 11:07
Normal topic null rosetta energy/score
by fred » Tue, 2011-10-18 10:31
1
1,898 by fred
Mon, 2014-04-21 06:47
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Mon, 2009-08-24 19:16
1
1,898 by smlewis
Mon, 2014-04-21 06:47
Normal topic segfault in membrane_abinitio2.mpi
by siegert » Sat, 2014-06-14 15:56
1
1,907 by yarovoy
Wed, 2016-03-30 12:37
Normal topic is the RosettaNMR protocol available in Rosetta 3.x?
by murgantia » Wed, 2011-01-26 00:39
1
1,907 by smlewis
Mon, 2014-04-21 06:47
Normal topic ab initio protein structure prediction
by croshong » Wed, 2009-12-16 23:25
1
1,908 by smlewis
Mon, 2014-04-21 06:47
Normal topic Computing pairwise energies for rotamers
by pachecoj » Sat, 2014-05-03 17:52
1
1,908 by rmoretti
Mon, 2014-05-12 07:50
Normal topic Calibur not listing cluster members
by Swillard » Sun, 2018-07-01 13:07
2
1,908 by benhardy
Fri, 2021-05-07 07:22
Normal topic ERROR: Illegal value for real option -docking:dock_pert specified: 8
by libai2098 » Tue, 2011-03-15 02:26
1
1,909 by smlewis
Mon, 2014-04-21 06:47
Normal topic Memory leak? Memory consumption rises quickly when using JD2 app(s)
by yuvals » Mon, 2014-10-06 11:35
1
1,910 by yuvals
Mon, 2014-10-06 15:02
Normal topic rosetta@home in local PC farm
by jarod » Wed, 2010-05-05 18:31
1
1,911 by smlewis
Mon, 2014-04-21 06:47
Normal topic Is CST_Design required for enzdes protocol?
by dasdevashishdas » Mon, 2018-09-03 00:51
2
1,913 by dasdevashishdas
Thu, 2018-09-27 03:35
Normal topic Rosetta Antibody: Unable to open file and terminates
by denatured » Thu, 2019-12-12 11:26
1
1,914 by denatured
Fri, 2019-12-13 11:19
Normal topic Hydrogen bond detection and shape complementarity
by sujigeorge1979 » Fri, 2019-06-14 02:39
3
1,919 by sujigeorge1979
Thu, 2019-06-27 01:30
Normal topic How to design a stand-alone loop from a binding interface?
by guangdianzi3 » Fri, 2011-02-11 21:11
1
1,923 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does Rosetta 3.1 have the 9999 limitation?
by wtscrystal » Sat, 2009-11-07 01:18
1
1,925 by smlewis
Mon, 2014-04-21 06:47
Normal topic tyrosine structure error
by dave » Mon, 2012-04-30 04:38
1
1,925 by frichter
Mon, 2014-04-21 06:47
Normal topic Bug in LoopMover_Refine_Backrub.cc ?
by SunH » Wed, 2010-12-15 00:08
1
1,926 by smlewis
Mon, 2014-04-21 06:47
Normal topic Reading chloride anions
by Martin Floor » Mon, 2018-08-27 14:29
2
1,928 by Martin Floor
Tue, 2018-08-28 13:21
Normal topic de novo RNA loop
by c.ocasion » Sun, 2021-02-14 18:34
5
1,931 by everyday847
Mon, 2021-03-29 20:19
Normal topic dock & design
by sdh_h » Fri, 2016-09-02 03:07
1
1,933 by rmoretti
Mon, 2016-09-05 09:39
Normal topic Error with simple_cycpep_predict protocol while using a native pdb file
by Florent Langenfeld » Tue, 2019-03-26 10:05
3
1,934 by Florent Langenfeld
Tue, 2020-09-22 03:03
Normal topic Can Rosetta generate proteins with sidechains ?
by wszjzhang » Fri, 2010-01-08 08:26
1
1,935 by smlewis
Mon, 2014-04-21 06:47
Normal topic Running Backrub
by enoee » Wed, 2010-10-27 07:51
1
1,936 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ineffective Constraints
by Sandy » Tue, 2017-09-05 19:36
2
1,940 by CameronJA
Wed, 2022-01-19 20:50
Normal topic question about protein docking results
by albumns » Thu, 2010-11-25 08:19
1
1,944 by smlewis
Mon, 2014-04-21 06:47
Normal topic question about the exposed strand results in beta_strand_homodimer_design demo
by szypanther » Wed, 2014-06-04 00:47
1
1,944 by rmoretti
Mon, 2014-06-09 10:05
Normal topic ERROR: FragmentIO: could not open file
by ahmadkhalifa » Wed, 2018-01-31 13:30
1
1,948 by rmoretti
Wed, 2018-01-31 14:57
Normal topic Helix at loop site
by berk » Fri, 2013-05-31 07:04
1
1,951 by smlewis
Mon, 2014-04-21 06:48
Normal topic make_fragments.pl without sparks
by nannemdp » Mon, 2014-06-09 13:18
1
1,953 by rmoretti
Tue, 2014-06-10 11:34
Normal topic backrub and design
by jtmacd » Thu, 2009-06-04 08:44
1
1,954 by jtmacd
Mon, 2014-04-21 06:47
Normal topic constraints
by lah435 » Sun, 2017-03-12 03:25
2
1,955 by lah435
Mon, 2017-04-03 19:50
Normal topic Free FSC score for validating refinement
by ahmadkhalifa » Thu, 2018-05-10 05:53
2
1,955 by ahmadkhalifa
Fri, 2018-06-29 07:54
Normal topic snugdock and rosetta 3.2??
by sudhar » Thu, 2011-02-24 00:36
1
1,960 by smlewis
Mon, 2014-04-21 06:47
Normal topic Non-ideal residue detected
by cnelson » Thu, 2010-07-01 12:20
1
1,961 by smlewis
Mon, 2014-04-21 06:47
Normal topic Performance improvement in AbinitioRelax and relax 3.2 ???
by smg3d » Sun, 2011-02-06 08:59
1
1,964 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric Docking (Making Trimer from Monomerics Units)
by sdg_lab » Thu, 2012-04-12 09:21
1
1,965 by rmoretti
Mon, 2014-04-21 06:47
Normal topic De novo density assembly weights don't add up to a 100
by ahmadkhalifa » Fri, 2018-08-03 12:07
3
1,965 by rmoretti
Tue, 2019-10-22 07:05
Normal topic ab initio folding part of a protein
by attesor » Wed, 2013-03-06 04:39
1
1,967 by smlewis
Mon, 2014-04-21 06:47
Normal topic Why I_sc of Rosetta 2016.02 and 2018.21 are so different?
by eminegenetics » Mon, 2018-07-16 12:51
2
1,967 by eminegenetics
Wed, 2018-07-18 13:48
Normal topic How to make Rosetta's sampling more aggresive ?
by jiongzhang » Mon, 2012-03-12 11:04
1
1,968 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Data Check for a newb
by ac.research » Sun, 2017-03-12 23:42
2
1,974 by ac.research
Fri, 2017-03-31 07:36
Normal topic ssDNA (aptamer)/protein docking
by JulienO » Fri, 2016-05-27 02:25
1
1,979 by rmoretti
Tue, 2016-07-12 08:47
Normal topic NMR / NOE related tools in 3.2 ?
by smg3d » Sun, 2011-02-06 06:11
1
1,982 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does comparative modeling works for membrane proteins
by justin » Wed, 2012-03-21 04:58
1
1,982 by smlewis
Mon, 2014-04-21 06:47
Normal topic "abinitio" with mpi
by al614 » Wed, 2016-10-12 12:17
1
1,982 by rmoretti
Fri, 2016-10-14 15:46
Normal topic rosetta nonlocal application
by mintseris » Tue, 2013-12-31 13:13
1
1,983 by rmoretti
Mon, 2014-04-21 06:48
Normal topic C-term amidation
by tttt » Tue, 2021-03-02 07:46
4
1,984 by tatsiana.bylund
Mon, 2022-01-24 07:58
Normal topic dock_mcm not found
by libai2098 » Mon, 2011-03-14 00:02
1
1,985 by smlewis
Mon, 2014-04-21 06:47
Normal topic Compilation in Mac OS 10.6
by rjn » Thu, 2010-02-18 12:35
1
1,985 by smlewis
Mon, 2014-04-21 06:47
Normal topic Parallel computing?
by mansi » Thu, 2010-08-19 08:39
1
2,003 by smlewis
Mon, 2014-04-21 06:47
Normal topic ratio of conformers and docking output
by pramod » Fri, 2014-12-12 12:54
1
2,005 by rmoretti
Mon, 2014-12-15 02:37
Normal topic Bug in cluster?
by nitroamos » Mon, 2011-11-21 12:53
1
2,008 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to minimize only a few key residues' orientation
by Ronghai Cheng » Mon, 2018-11-05 18:37
2
2,010 by Ronghai Cheng
Tue, 2018-11-13 21:56
Normal topic RestrictToRepackingRLT and PreventRepackingRLT
by coomteng@gmail.com » Mon, 2018-03-05 11:19
2
2,011 by coomteng@gmail.com
Tue, 2018-03-06 02:31
Normal topic why not scoring function in loop model?
by albumns » Thu, 2011-01-06 00:13
1
2,013 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta movie.
by exchhattu » Mon, 2009-09-14 21:02
1
2,014 by smlewis
Mon, 2014-04-21 06:47
Normal topic Reproducing Robetta AB initio setup
by jason-rosetta » Sat, 2014-10-04 04:26
1
2,014 by jadolfbr
Fri, 2014-10-31 08:55
Normal topic mcm for Docking in Rosetta3.1
by dyq » Tue, 2010-01-12 13:44
1
2,015 by smlewis
Mon, 2014-04-21 06:47
Normal topic Is it better to have smaller nstruct but many runs?
by Loki01 » Mon, 2018-11-19 11:50
3
2,017 by smlewis
Mon, 2018-11-19 13:20
Normal topic How to use Rosetta Position constraint docking?
by libai2098 » Mon, 2011-05-09 01:08
1
2,019 by libai2098
Mon, 2014-04-21 06:47
Normal topic Rosetta groups in Scandinavia
by knutjbj » Mon, 2010-11-15 23:50
1
2,025 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand Docking with Orphan GPCR
by marsaa » Thu, 2016-10-13 07:45
1
2,026 by rmoretti
Fri, 2016-10-14 16:43
Normal topic Rosetta 3.1 seg faults gcc while compiling on Fedora 11
by jtmacd » Fri, 2009-10-02 05:26
1
2,027 by smlewis
Mon, 2014-04-21 06:47
Normal topic Binary silent Output file reading problem
by wlzhang » Sun, 2014-04-20 17:47
1
2,038 by wlzhang
Sun, 2014-04-20 18:17
Normal topic Problem with run_lips.pl script
by wdyrka » Tue, 2010-09-07 11:07
1
2,046 by smlewis
Mon, 2014-04-21 06:47
Normal topic nbr_atom in ligand docking
by phanvy » Fri, 2015-07-03 07:40
1
2,047 by rmoretti
Fri, 2015-07-03 13:04
Normal topic total score
by score » Mon, 2010-05-03 02:03
1
2,051 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR - PDB's with occupancy field equal '1.0'
by khanhbinh » Sun, 2012-09-23 09:38
1
2,052 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Question about wrong homology design
by mony2182 » Fri, 2014-07-04 10:26
1
2,057 by rmoretti
Mon, 2014-07-07 08:08
Normal topic Error in Running Symmetry Docking cutpoint.
by Jacob » Wed, 2011-06-01 08:21
1
2,061 by smlewis
Mon, 2014-04-21 06:47
Normal topic Parametrisation problems
by DmitriiN » Tue, 2016-05-31 09:37
2
2,061 by DmitriiN
Wed, 2016-06-01 15:46
Normal topic Ambiguous constraints are ignored in ab initio
by mschneid » Wed, 2014-06-18 04:33
1
2,066 by rmoretti
Tue, 2014-07-01 12:21
Normal topic Knowledge check on steric effects
by pachecoj » Thu, 2014-10-16 09:13
1
2,070 by rmoretti
Thu, 2014-10-16 10:33
Normal topic Generating Protein/NA decoys
by rbeier1 » Mon, 2016-01-11 03:25
1
2,071 by rmoretti
Thu, 2016-04-28 16:25
Normal topic header pathways not accessable: No such file or directory
by rlwoltz » Tue, 2012-09-18 17:44
1
2,073 by smlewis
Mon, 2014-04-21 06:47
Normal topic DockingProtocol mover ensemble error
by dfcoelho » Tue, 2018-10-16 08:32
2
2,076 by brspurri
Thu, 2020-08-20 13:22
Normal topic Abinitio isolated
by ac.research » Wed, 2018-04-04 07:36
3
2,080 by smlewis
Wed, 2018-04-04 10:42
Normal topic Derivative of the Energy function?
by MkM » Fri, 2010-01-15 08:00
1
2,081 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to create a rotamer set that includes all possible rotamers of all possible amino acids
by AyushGoyal » Thu, 2014-11-06 10:37
1
2,085 by smlewis
Fri, 2014-11-07 12:03
Normal topic Error message: ArchiveManager spinning down
by Lati » Sun, 2016-01-24 02:42
1
2,085 by smlewis
Sun, 2016-01-24 03:24
Normal topic DesignByCavityProximity: element not expected
by karenjgonzalez » Tue, 2020-01-28 05:16
4
2,093 by karenjgonzalez
Tue, 2020-02-11 08:44
Normal topic Explanation of constraint functions?
by aloshbau » Mon, 2015-12-14 22:38
2
2,094 by aloshbau
Mon, 2015-12-14 23:30
Normal topic About RosettaScript examples
by jiongzhang » Thu, 2012-03-08 10:50
1
2,099 by smlewis
Mon, 2014-04-21 06:47
Normal topic Meaning of a couple terms?
by aloshbau » Sun, 2016-02-07 16:48
2
2,103 by aloshbau
Sun, 2016-02-14 20:14
Normal topic I got the message "bad format in first line of silent file". How do I resolve this?
by monos_morpheus » Thu, 2011-02-03 21:09
1
2,104 by smlewis
Mon, 2014-04-21 06:47
Normal topic reporting IteratedConvergence status
by sdh_h » Thu, 2016-08-04 10:05
2
2,106 by sdh_h
Thu, 2016-08-04 11:22
Normal topic Entropy calculation
by abdullah_ahmed » Wed, 2010-12-01 07:52
1
2,106 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to add constrains in flexible peptide docking
by kingbo2008 » Fri, 2011-04-29 07:55
1
2,106 by smlewis
Mon, 2014-04-21 06:47
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