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Rosetta 3 - General

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Normal topic Modeling
by hwillis » Wed, 2009-08-12 11:07
1
2,037 by frichter
Mon, 2014-04-21 06:47
Normal topic Atom_.cc line 304
by fred » Thu, 2014-09-11 12:04
1
2,037 by rmoretti
Fri, 2014-09-12 09:11
Normal topic demo documentation
by lshi » Fri, 2009-08-28 08:51
1
2,037 by smlewis
Mon, 2014-04-21 06:47
Normal topic Get nchi for heavy atoms
by pachecoj » Tue, 2014-11-04 19:04
1
2,040 by rmoretti
Tue, 2014-11-11 13:22
Normal topic docking using rosetta3.1 and rosetta2.3 leads to very different results
by lqzhang » Thu, 2010-01-14 11:54
1
2,040 by sid
Mon, 2014-04-21 06:47
Normal topic idealization error
by albumns » Mon, 2011-02-07 01:28
1
2,045 by smlewis
Mon, 2014-04-21 06:47
Normal topic PDB output sum
by enoee » Fri, 2010-07-16 12:29
1
2,046 by smlewis
Mon, 2014-04-21 06:47
Normal topic what kind of focefield does Rosetta based on?
by albumns » Tue, 2010-07-06 11:08
1
2,048 by smlewis
Mon, 2014-04-21 06:47
Normal topic How did you begin to learn Rosetta?
by mdeklotz » Mon, 2018-07-30 10:08
1
2,050 by jkleman
Tue, 2018-07-31 13:19
Normal topic "Illegal Instruction" for particular Movers/Filters
by Jhreed » Thu, 2016-08-11 12:59
1
2,050 by smlewis
Thu, 2016-08-11 13:16
Normal topic optimisation of a protein-protein interface
by sdh_h » Thu, 2017-05-04 05:06
1
2,054 by rmoretti
Mon, 2017-05-15 09:03
Normal topic how to do ensemble docking using rosetta3.1
by lqzhang » Mon, 2010-01-11 10:31
1
2,060 by sid
Mon, 2014-04-21 06:47
Normal topic how to set the output name for fixbb design
by Lindsay » Mon, 2012-04-30 09:32
1
2,061 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open weights.
by libai2098 » Thu, 2010-12-30 17:54
1
2,062 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Mon, 2009-08-24 19:16
1
2,066 by smlewis
Mon, 2014-04-21 06:47
Normal topic null rosetta energy/score
by fred » Tue, 2011-10-18 10:31
1
2,071 by fred
Mon, 2014-04-21 06:47
Normal topic opt-E Reference energies
by vijayan » Wed, 2013-08-07 07:35
1
2,071 by rmoretti
Mon, 2014-04-21 06:48
Normal topic python problem?
by albumns » Fri, 2012-03-02 11:03
1
2,075 by albumns
Mon, 2014-04-21 06:47
Normal topic Parallel Installation of ROSETTA3.1
by anirbanzz » Mon, 2009-12-07 21:09
1
2,078 by smlewis
Mon, 2014-04-21 06:47
Normal topic Do Rosetta support hydroxide(OH-) and oxide(O2-) params?
by dasdevashishdas » Thu, 2018-08-16 21:15
2
2,079 by dasdevashishdas
Thu, 2018-08-23 18:02
Normal topic ERROR: Illegal value for real option -docking:dock_pert specified: 8
by libai2098 » Tue, 2011-03-15 02:26
1
2,079 by smlewis
Mon, 2014-04-21 06:47
Normal topic local refinement
by mahajanr » Mon, 2010-07-19 15:04
1
2,083 by smlewis
Mon, 2014-04-21 06:47
Normal topic which modules support MPI now?
by albumns » Fri, 2013-11-08 01:32
1
2,084 by rmoretti
Mon, 2014-04-21 06:48
Normal topic is the RosettaNMR protocol available in Rosetta 3.x?
by murgantia » Wed, 2011-01-26 00:39
1
2,085 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta@home in local PC farm
by jarod » Wed, 2010-05-05 18:31
1
2,085 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to convert fragments to PDB format?
by JadAbbass » Wed, 2015-08-19 04:05
1
2,085 by rmoretti
Wed, 2015-09-02 12:48
Normal topic ligand flexibility
by dave » Thu, 2015-02-12 08:48
1
2,087 by rmoretti
Wed, 2015-02-18 09:17
Normal topic Rosetta (antibody_designer) performance
by Kihang _Youn » Wed, 2022-03-02 00:48
7
2,088 by Kihang _Youn
Thu, 2022-03-10 16:30
Normal topic Cluster decoys after running PlexPepDock
by phanvy » Thu, 2014-06-19 06:03
1
2,091 by nawsad
Fri, 2014-06-20 02:48
Normal topic Bug in LoopMover_Refine_Backrub.cc ?
by SunH » Wed, 2010-12-15 00:08
1
2,091 by smlewis
Mon, 2014-04-21 06:47
Normal topic segfault in membrane_abinitio2.mpi
by siegert » Sat, 2014-06-14 15:56
1
2,093 by yarovoy
Wed, 2016-03-30 12:37
Normal topic tyrosine structure error
by dave » Mon, 2012-04-30 04:38
1
2,095 by frichter
Mon, 2014-04-21 06:47
Normal topic Error using ddg_monomer application (Assertion `pose.residue(resnum).name1() == wt` failed)
by sgaray » Thu, 2021-06-24 14:47
2
2,097 by sgaray
Fri, 2021-06-25 11:26
Normal topic How to design a stand-alone loop from a binding interface?
by guangdianzi3 » Fri, 2011-02-11 21:11
1
2,097 by smlewis
Mon, 2014-04-21 06:47
Normal topic Memory leak? Memory consumption rises quickly when using JD2 app(s)
by yuvals » Mon, 2014-10-06 11:35
1
2,103 by yuvals
Mon, 2014-10-06 15:02
Normal topic rosetta compile
by MA » Wed, 2017-04-26 00:46
2
2,107 by MA
Thu, 2017-04-27 18:53
Normal topic Does Rosetta have a class diagram for each class in the source code?
by ylwang » Thu, 2019-11-21 04:24
3
2,107 by ylwang
Sat, 2019-11-23 06:26
Normal topic ab initio protein structure prediction
by croshong » Wed, 2009-12-16 23:25
1
2,108 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error running GenericMonteCarlo mover within MultipleOutputWrapper mover
by abhi_pe_acharya » Mon, 2018-04-16 04:58
1
2,109 by abhi_pe_acharya
Thu, 2018-04-19 03:49
Normal topic Structure refinement with RDC constraint
by shushunur » Thu, 2018-01-18 00:44
1
2,112 by rmoretti
Tue, 2018-01-30 09:08
Normal topic Computing pairwise energies for rotamers
by pachecoj » Sat, 2014-05-03 17:52
1
2,113 by rmoretti
Mon, 2014-05-12 07:50
Normal topic Does Rosetta 3.1 have the 9999 limitation?
by wtscrystal » Sat, 2009-11-07 01:18
1
2,117 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can Rosetta generate proteins with sidechains ?
by wszjzhang » Fri, 2010-01-08 08:26
1
2,118 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fitting a structure with an unrecognized residue to an EM density
by ahmadkhalifa » Tue, 2017-12-05 14:44
2
2,122 by ahmadkhalifa
Wed, 2017-12-06 12:30
Normal topic Output fasta of enzdes generated pdbs
by eyong123 » Tue, 2015-05-19 08:07
1
2,125 by rmoretti
Mon, 2015-05-25 11:07
Normal topic H3 modelling scoring function
by aneamtu » Wed, 2017-12-27 23:10
2
2,126 by aneamtu
Mon, 2018-01-08 23:49
Normal topic question about protein docking results
by albumns » Thu, 2010-11-25 08:19
1
2,126 by smlewis
Mon, 2014-04-21 06:47
Normal topic Running Backrub
by enoee » Wed, 2010-10-27 07:51
1
2,129 by smlewis
Mon, 2014-04-21 06:47
Normal topic What is the best way to make a residue-specific SASA constraint?
by jmaly » Thu, 2020-01-23 16:40
2
2,131 by matteoferla
Wed, 2020-01-29 12:18
Normal topic Non-ideal residue detected
by cnelson » Thu, 2010-07-01 12:20
1
2,135 by smlewis
Mon, 2014-04-21 06:47
Normal topic backrub and design
by jtmacd » Thu, 2009-06-04 08:44
1
2,137 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Symmetric Docking (Making Trimer from Monomerics Units)
by sdg_lab » Thu, 2012-04-12 09:21
1
2,138 by rmoretti
Mon, 2014-04-21 06:47
Normal topic dock_mcm not found
by libai2098 » Mon, 2011-03-14 00:02
1
2,139 by smlewis
Mon, 2014-04-21 06:47
Normal topic make_fragments.pl without sparks
by nannemdp » Mon, 2014-06-09 13:18
1
2,141 by rmoretti
Tue, 2014-06-10 11:34
Normal topic question about the exposed strand results in beta_strand_homodimer_design demo
by szypanther » Wed, 2014-06-04 00:47
1
2,148 by rmoretti
Mon, 2014-06-09 10:05
Normal topic How to make Rosetta's sampling more aggresive ?
by jiongzhang » Mon, 2012-03-12 11:04
1
2,151 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Does comparative modeling works for membrane proteins
by justin » Wed, 2012-03-21 04:58
1
2,152 by smlewis
Mon, 2014-04-21 06:47
Normal topic ab initio folding part of a protein
by attesor » Wed, 2013-03-06 04:39
1
2,155 by smlewis
Mon, 2014-04-21 06:47
Normal topic snugdock and rosetta 3.2??
by sudhar » Thu, 2011-02-24 00:36
1
2,159 by smlewis
Mon, 2014-04-21 06:47
Normal topic Compilation in Mac OS 10.6
by rjn » Thu, 2010-02-18 12:35
1
2,160 by smlewis
Mon, 2014-04-21 06:47
Normal topic The algorithm of adding missing Hydrogen to a backbone
by ac.research » Tue, 2018-03-06 03:48
1
2,162 by rmoretti
Sat, 2018-03-17 10:43
Normal topic Protein Docking Error
by ac.research » Thu, 2017-08-17 02:57
2
2,162 by ac.research
Fri, 2017-08-18 00:53
Normal topic dock & design
by sdh_h » Fri, 2016-09-02 03:07
1
2,163 by rmoretti
Mon, 2016-09-05 09:39
Normal topic Helix at loop site
by berk » Fri, 2013-05-31 07:04
1
2,164 by smlewis
Mon, 2014-04-21 06:48
Normal topic Performance improvement in AbinitioRelax and relax 3.2 ???
by smg3d » Sun, 2011-02-06 08:59
1
2,170 by smlewis
Mon, 2014-04-21 06:47
Normal topic NMR / NOE related tools in 3.2 ?
by smg3d » Sun, 2011-02-06 06:11
1
2,173 by smlewis
Mon, 2014-04-21 06:47
Normal topic Clarify ProteinInterfaceDesign “randomness”
by tsztain » Wed, 2019-02-27 09:41
3
2,176 by rmoretti
Sat, 2019-03-30 12:12
Normal topic why not scoring function in loop model?
by albumns » Thu, 2011-01-06 00:13
1
2,181 by smlewis
Mon, 2014-04-21 06:47
Normal topic Where to find old version of Rosetta with git version number
by mao_x » Wed, 2019-08-07 01:22
2
2,184 by mao_x
Thu, 2019-08-08 01:37
Normal topic ERROR: FragmentIO: could not open file
by ahmadkhalifa » Wed, 2018-01-31 13:30
1
2,185 by rmoretti
Wed, 2018-01-31 14:57
Normal topic Parallel computing?
by mansi » Thu, 2010-08-19 08:39
1
2,186 by smlewis
Mon, 2014-04-21 06:47
Normal topic Bug in cluster?
by nitroamos » Mon, 2011-11-21 12:53
1
2,192 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ineffective Constraints
by Sandy » Tue, 2017-09-05 19:36
2
2,193 by CameronJA
Wed, 2022-01-19 20:50
Normal topic mcm for Docking in Rosetta3.1
by dyq » Tue, 2010-01-12 13:44
1
2,194 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta groups in Scandinavia
by knutjbj » Mon, 2010-11-15 23:50
1
2,194 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta nonlocal application
by mintseris » Tue, 2013-12-31 13:13
1
2,195 by rmoretti
Mon, 2014-04-21 06:48
Normal topic "abinitio" with mpi
by al614 » Wed, 2016-10-12 12:17
1
2,195 by rmoretti
Fri, 2016-10-14 15:46
Normal topic How to use Rosetta Position constraint docking?
by libai2098 » Mon, 2011-05-09 01:08
1
2,197 by libai2098
Mon, 2014-04-21 06:47
Normal topic Is CST_Design required for enzdes protocol?
by dasdevashishdas » Mon, 2018-09-03 00:51
2
2,201 by dasdevashishdas
Thu, 2018-09-27 03:35
Normal topic ssDNA (aptamer)/protein docking
by JulienO » Fri, 2016-05-27 02:25
1
2,211 by rmoretti
Tue, 2016-07-12 08:47
Normal topic Problem with run_lips.pl script
by wdyrka » Tue, 2010-09-07 11:07
1
2,212 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR - PDB's with occupancy field equal '1.0'
by khanhbinh » Sun, 2012-09-23 09:38
1
2,217 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ratio of conformers and docking output
by pramod » Fri, 2014-12-12 12:54
1
2,217 by rmoretti
Mon, 2014-12-15 02:37
Normal topic Calibur not listing cluster members
by Swillard » Sun, 2018-07-01 13:07
2
2,217 by benhardy
Fri, 2021-05-07 07:22
Normal topic constraints
by lah435 » Sun, 2017-03-12 03:25
2
2,218 by lah435
Mon, 2017-04-03 19:50
Normal topic Rosetta movie.
by exchhattu » Mon, 2009-09-14 21:02
1
2,219 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta 3.1 seg faults gcc while compiling on Fedora 11
by jtmacd » Fri, 2009-10-02 05:26
1
2,223 by smlewis
Mon, 2014-04-21 06:47
Normal topic Data Check for a newb
by ac.research » Sun, 2017-03-12 23:42
2
2,225 by ac.research
Fri, 2017-03-31 07:36
Normal topic Reproducing Robetta AB initio setup
by jason-rosetta » Sat, 2014-10-04 04:26
1
2,225 by jadolfbr
Fri, 2014-10-31 08:55
Normal topic Rosetta Antibody: Unable to open file and terminates
by denatured » Thu, 2019-12-12 11:26
1
2,228 by denatured
Fri, 2019-12-13 11:19
Normal topic total score
by score » Mon, 2010-05-03 02:03
1
2,228 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error in Running Symmetry Docking cutpoint.
by Jacob » Wed, 2011-06-01 08:21
1
2,238 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand Docking with Orphan GPCR
by marsaa » Thu, 2016-10-13 07:45
1
2,238 by rmoretti
Fri, 2016-10-14 16:43
Normal topic Design with non-canonical amino acids (NCAA)
by yinasun » Mon, 2019-08-05 00:34
2
2,243 by matteoferla
Thu, 2019-08-22 05:39
Normal topic How to specify constraints during fold-and-dock?
by sarah_b » Tue, 2020-05-12 01:55
3
2,243 by matteoferla
Thu, 2020-05-14 07:01
Normal topic Hydrogen bond detection and shape complementarity
by sujigeorge1979 » Fri, 2019-06-14 02:39
3
2,247 by sujigeorge1979
Thu, 2019-06-27 01:30
Normal topic header pathways not accessable: No such file or directory
by rlwoltz » Tue, 2012-09-18 17:44
1
2,247 by smlewis
Mon, 2014-04-21 06:47
Normal topic Why I_sc of Rosetta 2016.02 and 2018.21 are so different?
by eminegenetics » Mon, 2018-07-16 12:51
2
2,248 by eminegenetics
Wed, 2018-07-18 13:48
Normal topic Binary silent Output file reading problem
by wlzhang » Sun, 2014-04-20 17:47
1
2,249 by wlzhang
Sun, 2014-04-20 18:17
Normal topic Question about wrong homology design
by mony2182 » Fri, 2014-07-04 10:26
1
2,250 by rmoretti
Mon, 2014-07-07 08:08
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