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Compilation

Colab Install Help

Category: 
Compilation

I'm trying to install Pyrosetta using Colab with the workshop notebooks but I keep getting errors. The main error is locating the tar file in My Drive. The code I'm running is: 

#sys.path.insert(0, google_drive_packages_path)

 

# installing PyRosetta

if sys.version_info.major != 3 or sys.version_info.minor != 6:

    print('Need Python-3.6 to run!')

    sys.exit(1)

 

import_start_time = time.time()

 

Post Situation: 

Error with compilation of Rosetta_3.12 in a large computational cluster

Category: 
Compilation

Dear all,

I am trying to compilation of Rosetta_scr_3.12 (using gcc-7 as the compiler) in  large computational cluster with the following command:

    ./scons.py bin mode=release extras=mpi -j 24

 

I get the following error message:

Post Situation: 

Trouble installing Pyrosetta

Category: 
Compilation

Hi, I had some problems downloading Pyrosetta (macOS 10.15.3 Catalina, python2.7.16, Pyrosetta-Release-2.7 from download page on website). After unzipping and running the setup command, I tried to import the pyrosetta library (import pyrosetta; pyrosetta.init() ) but got the error message

Traceback (most recent call last):

  File "<stdin>", line 1, in <module>

  File "pyrosetta/__init__.py", line 15, in <module>

    import pyrosetta.rosetta as rosetta

Post Situation: 

Rosetta compilation error with gcc-10

Category: 
Compilation

Dear all,

I am trying to compile ROSETTA 3.12 on Red Hat Enterprise Linux Server release 6.5. I install the gcc (GCC) 10.1.0, and run the follow command

     ./scons.py bin mode=release -j 60

I get some error information like:

Post Situation: 

Affinity optimization with GreedyOptMutationMover

Category: 
Compilation

Hello

Can someone please give an example of a simple xml file and commandline for running the GreedyOptMutationMover to optimize the affinity of an interface of 2 proteins in a PDB file by mutation residues in a sequence of one of the proteins? The protein being mutated is relatively stable but the mutations are in a loop. What taskoperators and additional movers (repacking or backrub?) are necessary for doing this and reporting the change in ddG?

Thanks!

Post Situation: 

Error when compiling in Linux Ubuntu VM

Category: 
Compilation

Hi, good day everyone, 

I was trying to compile Rosetta 3 and after running smoothly for two hours it stopped, and I got the following error message: 

g++: internal compiler error: Killed (program cc1plus)

Please submit a full bug report,

with preprocessed source if appropriate.

See <file:///usr/share/doc/gcc-7/README.Bugs> for instructions.

scons: *** [build/src/release/linux/5.3/64/x86/gcc/7/default/core/io/pose_from_sfr/chirality_resolution.os] Error 4

Post Situation: 

Is a bash command "wget" a reasonable way for download of Rosetta with binaries?

Category: 
Compilation

Dear Sir or Madam,

previously I have always downloaded Rosetta with binaries. But for now the Rosetta package with binary files became too huge (over 17 GB), which makes the Rosetta package download through slow browser (1 Mbps in average and it doesn't depend on a browser) really complicated deal. Other problem, which complicates downloading the Rosetta package, consists in that, what the download process is aborted when laptop screen fades and laptop go to sleep mode.

Post Situation: 

How to add my own .cc and .hh file

Category: 
Compilation

Hello,i use scons to complie.

Recently,I write some class in .cc and .hh files , when i #include<~path/name.hh>,i find that it did not compile .cc files. I have read sconstruct file but do not know how to add my own file to compile with.

Please give me some help

Post Situation: 

Rosetta compilation error through newer gcc-g++ versions

Category: 
Compilation

Dear fellows,

I have recently downloaded and untar new version of Rosetta - as a rosetta_src_2020.03.61102_bundle folder. When I tried to compile it via standart command "./scons.py -j6 mode=release bin" in /main/source/ directory, I got such error:

"g++: warning: switch '-ffor-scope' is no longer supported

Post Situation: 

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