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Compilation

clean_pdb not working

Category: 
Compilation

The simple clean_pdb.py does not function.

When I look at the script it is trying to print the wget_cmd command, WHY??

Here is the input and output:

python /home/aserobian/Documents/rosetta/tools/protein_tools/scripts/clean_pdb.py 2n2a AB
  File "/home/aserobian/Documents/rosetta/tools/protein_tools/scripts/clean_pdb.py", line 56
    print wget_cmd
          ^
SyntaxError: Missing parentheses in call to 'print'. Did you mean print(wget_cmd)?

What is wrong here?

 

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Questions about alanine scanning in Rosetta

Category: 
Compilation

Hi,

I am using AlaScan.xml to do alanine scanning for my antibody antigen complex, but when I run the script, there was error said “protocols.rosetta_scripts.ParsedProtocol: Mover Docking reports failure!”

 

Following is my script:

<ROSETTASCRIPTS>

       <SCOREFXNS>

              <ScoreFunction name="interface" weights="interface"/>

       </SCOREFXNS>

       <FILTERS>

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Rosetta3.12 installation

Category: 
Compilation

Hi all,

Here is the long text of my rescent Rosetta installation process. I really appreciate if you can read it and help with the problem!

I am trying to install newest Rosetta3.12 on a cluster I am currently working with (RHEL6). The version of gcc on this cluster is gcc 4.4.7 which means I need to install a newer gcc first.

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Error in building fragment_picker with boost_thread

Category: 
Compilation

Hi all,

I am new to the whole Rosetta community and am asking for some help in compiling Rosetta3.  I have downloaded build Rosetta3.12 build 2020.08.61146 and tried to compile the thread boost version of fragment pick by using

./scons.py mode=release extras=boost_thread bin/fragment_picker.boost_thread.linuxgccrelease -j 20

The error message that I get is:

**************************************************

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Colab Install Help

Category: 
Compilation

I'm trying to install Pyrosetta using Colab with the workshop notebooks but I keep getting errors. The main error is locating the tar file in My Drive. The code I'm running is: 

#sys.path.insert(0, google_drive_packages_path)

 

# installing PyRosetta

if sys.version_info.major != 3 or sys.version_info.minor != 6:

    print('Need Python-3.6 to run!')

    sys.exit(1)

 

import_start_time = time.time()

 

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Error with compilation of Rosetta_3.12 in a large computational cluster

Category: 
Compilation

Dear all,

I am trying to compilation of Rosetta_scr_3.12 (using gcc-7 as the compiler) in  large computational cluster with the following command:

    ./scons.py bin mode=release extras=mpi -j 24

 

I get the following error message:

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Trouble installing Pyrosetta

Category: 
Compilation

Hi, I had some problems downloading Pyrosetta (macOS 10.15.3 Catalina, python2.7.16, Pyrosetta-Release-2.7 from download page on website). After unzipping and running the setup command, I tried to import the pyrosetta library (import pyrosetta; pyrosetta.init() ) but got the error message

Traceback (most recent call last):

  File "<stdin>", line 1, in <module>

  File "pyrosetta/__init__.py", line 15, in <module>

    import pyrosetta.rosetta as rosetta

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Rosetta compilation error with gcc-10

Category: 
Compilation

Dear all,

I am trying to compile ROSETTA 3.12 on Red Hat Enterprise Linux Server release 6.5. I install the gcc (GCC) 10.1.0, and run the follow command

     ./scons.py bin mode=release -j 60

I get some error information like:

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