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Compilation

SCONS fails compiling legacy minirosetta on g++ error

Category: 
Compilation

Hi:

I am trying to compile minirosetta for a legacy application, but the scons file has a problem with my GCC and even clang build.  I get this error on compile attempt, and I have sucessfully compiled the most recent rosetta build on other ocassions.

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/usr/bin/ld: cannot find -lsource

Category: 
Compilation

when i build the denovo_density.cc,i got this problem:
/usr/bin/ld: cannot find  -lsource

I search /usr/bin and do not find there is a dlb name "libsource",so i use apt-get to install libsource-highlight-so(no libsource for install),but it does not works

So where could i find this lib

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Updating databases and weekly update

Category: 
Compilation

Hi,

I already have rosetta compiled in my linux workstation and it is working fine. Few questions regarding  regular updating of databases. How should I update the databases of rosetta. I know that there are weekly release for rosetta updating these release is enough. whether the weekly release has all the relevant updated database.   How  do I update the rosetta. Whether I have to recompile the source code from the weekly updates. These are very basic questions and your response will be greatly appreciated.

Thanking you

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Error compilation Phenix-Rosetta interface

Category: 
Compilation

Hello!

I have been trying to set up the Phenix-Rosetta interface (phenix.rosetta.run_phenix_interface) by compiling rosetta (rosetta_bin_linux_2019.14.60699_bundle) with the command: ./scons.py -j4 bin mode=release extras=python. However, I get the following error:

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PyRosetta on a HPC

Category: 
Compilation

Hello people,  i have been trying to compile PyRosetta on a HPC (Red Hat 6.4) for several weeks now without success.

I tried many different approaches so i will write the gist of it.  I tried compiling PyRosetta which did not work, then I read i have to compile it from source, so this is what I am trying to do. I uploaded Rosetta to the HPC.

most of the programs are old, so I had to install python3.6.1, Cmake 3.5.9, GCC 5.3.0, and Ninja 1.9.0

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Scons LIBPATH cannot find library

Category: 
Compilation

SCons is unable to find a shared library (libcloog-isl.so.4).

The build fails immediately with the following error:

/share/apps/NYUAD3/gcc/gcc/4.9.3/el7/libexec/gcc/x86_64-unknown-linux-gnu/4.9.3/cc1plus: error while loading shared libraries: libcloog-isl.so.4: cannot open shared object file: No such file or directory

I confirm that libcloog-isl.so.4 does exist:

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Error msg while compiling on a new cluster

Category: 
Compilation

Not sure why scons is failing on a new cluster

>./scons.py bin -j16 mode=release extras=mpi

I see en error:

scons: *** Do not know how to make File target `bin' (/usr/projects/xyz/shared/rosetta_3.10_release/main/source/bin). Stop.

rosetta_3.10_release could be easily compiled on my local machine.

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