You are here

Compilation

Rosetta3.12 installation

Category: 
Compilation

Hi all,

Here is the long text of my rescent Rosetta installation process. I really appreciate if you can read it and help with the problem!

I am trying to install newest Rosetta3.12 on a cluster I am currently working with (RHEL6). The version of gcc on this cluster is gcc 4.4.7 which means I need to install a newer gcc first.

Post Situation: 

Error in building fragment_picker with boost_thread

Category: 
Compilation

Hi all,

I am new to the whole Rosetta community and am asking for some help in compiling Rosetta3.  I have downloaded build Rosetta3.12 build 2020.08.61146 and tried to compile the thread boost version of fragment pick by using

./scons.py mode=release extras=boost_thread bin/fragment_picker.boost_thread.linuxgccrelease -j 20

The error message that I get is:

**************************************************

Post Situation: 

Colab Install Help

Category: 
Compilation

I'm trying to install Pyrosetta using Colab with the workshop notebooks but I keep getting errors. The main error is locating the tar file in My Drive. The code I'm running is: 

#sys.path.insert(0, google_drive_packages_path)

 

# installing PyRosetta

if sys.version_info.major != 3 or sys.version_info.minor != 6:

    print('Need Python-3.6 to run!')

    sys.exit(1)

 

import_start_time = time.time()

 

Post Situation: 

Error with compilation of Rosetta_3.12 in a large computational cluster

Category: 
Compilation

Dear all,

I am trying to compilation of Rosetta_scr_3.12 (using gcc-7 as the compiler) in  large computational cluster with the following command:

    ./scons.py bin mode=release extras=mpi -j 24

 

I get the following error message:

Post Situation: 

Trouble installing Pyrosetta

Category: 
Compilation

Hi, I had some problems downloading Pyrosetta (macOS 10.15.3 Catalina, python2.7.16, Pyrosetta-Release-2.7 from download page on website). After unzipping and running the setup command, I tried to import the pyrosetta library (import pyrosetta; pyrosetta.init() ) but got the error message

Traceback (most recent call last):

  File "<stdin>", line 1, in <module>

  File "pyrosetta/__init__.py", line 15, in <module>

    import pyrosetta.rosetta as rosetta

Post Situation: 

Rosetta compilation error with gcc-10

Category: 
Compilation

Dear all,

I am trying to compile ROSETTA 3.12 on Red Hat Enterprise Linux Server release 6.5. I install the gcc (GCC) 10.1.0, and run the follow command

     ./scons.py bin mode=release -j 60

I get some error information like:

Post Situation: 

Affinity optimization with GreedyOptMutationMover

Category: 
Compilation

Hello

Can someone please give an example of a simple xml file and commandline for running the GreedyOptMutationMover to optimize the affinity of an interface of 2 proteins in a PDB file by mutation residues in a sequence of one of the proteins? The protein being mutated is relatively stable but the mutations are in a loop. What taskoperators and additional movers (repacking or backrub?) are necessary for doing this and reporting the change in ddG?

Thanks!

Post Situation: 

Error when compiling in Linux Ubuntu VM

Category: 
Compilation

Hi, good day everyone, 

I was trying to compile Rosetta 3 and after running smoothly for two hours it stopped, and I got the following error message: 

g++: internal compiler error: Killed (program cc1plus)

Please submit a full bug report,

with preprocessed source if appropriate.

See <file:///usr/share/doc/gcc-7/README.Bugs> for instructions.

scons: *** [build/src/release/linux/5.3/64/x86/gcc/7/default/core/io/pose_from_sfr/chirality_resolution.os] Error 4

Post Situation: 

Pages

Subscribe to RSS - Compilation