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Rosetta 3 - Applications

Topic / Topic starter Repliessort ascending Views Last post
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
0
1,499 by felipet
Wed, 2014-07-02 10:23
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
0
1,445 by yigallah
Mon, 2014-12-15 08:46
Normal topic appropriate sampling for protein docking to a multi chain assembly
by SWM » Fri, 2020-01-24 11:22
0
878 by SWM
Fri, 2020-01-24 11:22
Normal topic Bug Report - Encoding issue
by daniloboskovic » Tue, 2020-08-04 07:02
0
788 by daniloboskovic
Tue, 2020-08-04 07:02
Normal topic Weighted scores??
by sizhang » Wed, 2018-12-05 15:22
0
1,027 by sizhang
Wed, 2018-12-05 15:22
Normal topic flexpepdcok of lipid conjugated peptide with glyco protein.
by ravi.thakkkar369 » Fri, 2020-12-18 13:00
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804 by ravi.thakkkar369
Fri, 2020-12-18 13:00
Normal topic DNA-protein docking
by ksteczk » Sat, 2020-04-11 11:23
0
1,448 by ksteczk
Sat, 2020-04-11 11:23
Normal topic Pepspec Anchor Dock
by Soler » Wed, 2020-09-16 19:08
0
867 by Soler
Wed, 2020-09-16 19:08
Normal topic Repacker vs minimization
by Elijah_Hix » Fri, 2021-07-02 07:25
0
698 by Elijah_Hix
Fri, 2021-07-02 07:25
Normal topic Prepacking a macrocycle for docking / preserving cyclization
by almeida85 » Thu, 2022-09-08 06:54
0
900 by almeida85
Thu, 2022-09-08 06:54
Normal topic NCAA Rotamers for Cyclosporin
by marinok » Mon, 2020-09-28 14:11
0
1,243 by marinok
Mon, 2020-09-28 14:11
Normal topic ddg_monomer: if MPI executable is reproducible and efficient?
by lanselibai » Sun, 2015-01-11 09:48
0
1,685 by lanselibai
Sun, 2015-01-11 10:50
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
0
1,564 by achambe
Mon, 2016-01-04 11:26
Normal topic RosettaCM
by jlawrie » Fri, 2020-08-14 14:09
0
1,544 by jlawrie
Fri, 2020-08-14 14:09
Normal topic Error with RoseTTAFold
by sc19 » Thu, 2022-07-14 03:40
0
1,073 by sc19
Thu, 2022-07-14 03:40
Normal topic BridgeChains mover deletes residues at break
by kmj » Thu, 2024-02-22 12:14
0
297 by kmj
Thu, 2024-02-22 12:14
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
0
1,484 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic Residue selector
by Alison_Yajie » Wed, 2020-06-17 19:57
0
895 by Alison_Yajie
Thu, 2020-06-18 09:47
Normal topic FastRelaxMover parameters for antibody-antigen interaction analysis
by samuel_k » Thu, 2022-01-27 01:08
0
1,049 by samuel_k
Thu, 2022-01-27 01:08
Normal topic Generating a new Vall database
by vijay.anand » Tue, 2023-06-20 12:08
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442 by vijay.anand
Tue, 2023-06-20 12:08
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
0
2,270 by fred
Mon, 2014-04-21 06:47
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
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2,234 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic how to run ala_scan.xml
by xinmiaohe » Mon, 2019-08-26 09:38
0
1,144 by xinmiaohe
Mon, 2019-08-26 09:38
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
0
2,297 by lanselibai
Thu, 2015-01-29 00:50
Normal topic Comparative Modeling Templates for Protein with Multiple Domains
by Morrian_Lynn » Wed, 2020-03-04 10:42
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909 by Morrian_Lynn
Wed, 2020-03-04 10:42
Normal topic hpatch commands and how to identify patches
by Bianca Oliva » Thu, 2021-04-29 04:02
0
994 by Bianca Oliva
Thu, 2021-04-29 04:02
Normal topic CS-Rosetta cofactor
by martongadanecz » Wed, 2022-08-03 01:05
0
851 by martongadanecz
Wed, 2022-08-03 01:05
Normal topic Modelling humanized camelid like antibody
by terabithia2011 » Tue, 2021-01-26 10:12
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912 by terabithia2011
Tue, 2021-01-26 10:12
Normal topic simple_cycpep_predict thioether_lariat option
by Ken » Mon, 2022-03-14 15:14
0
843 by Ken
Mon, 2022-03-14 15:14
Normal topic Docking the border segments of coiled coils in parallel orientation
by Corvin » Mon, 2019-12-02 02:00
0
1,004 by Corvin
Mon, 2019-12-02 02:00
Normal topic about “protein mimic designer”
by sia » Wed, 2022-04-27 19:59
0
1,041 by sia
Wed, 2022-04-27 19:59
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
0
2,503 by kamau
Wed, 2014-09-24 11:35
Normal topic Problems with waters in CoupledMoves application
by Corvin » Tue, 2021-11-16 07:16
0
922 by Corvin
Tue, 2021-11-16 07:22
Normal topic How to change the axes of "-spin" in docking_protocol
by Zehui Zhou » Mon, 2023-02-13 22:06
0
2,212 by Zehui Zhou
Mon, 2023-02-13 22:06
Normal topic Docking of multichain oligomers
by sdh_h » Wed, 2020-03-25 12:43
0
1,118 by sdh_h
Wed, 2020-03-25 12:43
Normal topic crazy loopmodel: linear output pdbs
by fred » Wed, 2014-12-03 12:27
0
1,427 by fred
Wed, 2014-12-03 12:28
Normal topic Enzyme Design Not Editing Structure
by liuwenxi » Wed, 2022-05-18 10:12
0
928 by liuwenxi
Wed, 2022-05-18 10:12
Normal topic error in loop remodeling
by syntekabio2019 » Wed, 2023-04-05 01:00
0
497 by syntekabio2019
Wed, 2023-04-05 01:01
Normal topic Nanobody design
by chandana » Tue, 2022-08-09 20:36
0
1,279 by chandana
Tue, 2022-08-09 20:36
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
0
2,004 by MajorID
Mon, 2014-04-21 06:47
Normal topic Pepspec - sequence sampling
by almeida85 » Thu, 2022-06-23 04:05
0
899 by almeida85
Thu, 2022-06-23 05:50
Normal topic charge grid in rosetta ligand docking using rosetta script
by syntekabio2019 » Mon, 2022-01-17 23:53
0
1,044 by syntekabio2019
Mon, 2022-01-17 23:53
Normal topic Repeatability of DDG calculation
by jennifer » Wed, 2015-04-08 05:29
0
1,651 by jennifer
Wed, 2015-04-08 05:29
Normal topic structure prediction
by MA » Wed, 2018-09-05 00:50
0
1,017 by MA
Wed, 2018-09-05 00:50
Normal topic Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type"
by amorin » Mon, 2021-09-27 12:16
0
980 by amorin
Mon, 2021-09-27 12:16
Normal topic remodel: what are the exact meanings of notations for secondary structure?
by lanselibai » Sat, 2015-01-17 04:53
0
1,545 by lanselibai
Sat, 2015-01-17 07:57
Normal topic DDG and interaction score problem
by a-eatemadi@razi... » Mon, 2018-04-09 22:54
0
1,253 by a-eatemadi@razi...
Mon, 2018-04-09 22:54
Normal topic protein relax
by Alison_Yajie » Tue, 2020-05-19 08:29
0
934 by Alison_Yajie
Tue, 2020-05-19 08:29
Normal topic Grafting using antibody.mpi.linuxgccrelease and specifying custom template which doesnt have pdb id.
by SubhaK » Wed, 2023-01-18 23:33
0
994 by SubhaK
Wed, 2023-01-18 23:33
Normal topic score is 0 in the output? - RosettaScripts
by chrisHKL » Thu, 2020-03-05 09:33
0
1,000 by chrisHKL
Thu, 2020-03-05 12:58
Normal topic Issues with modifying dock.xml for multiple ligand docking
by DGR95 » Fri, 2021-05-14 12:51
0
812 by DGR95
Fri, 2021-05-14 12:51
Normal topic Include MHC alpha helices in loop modelling protocol for pMHC complex
by Roberto » Thu, 2022-08-04 07:22
0
870 by Roberto
Thu, 2022-08-04 07:22
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
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1,248 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic ligand_docking: ligand preparation
by Alison_Yajie » Thu, 2020-07-02 07:05
0
930 by Alison_Yajie
Thu, 2020-07-02 07:10
Normal topic core.optimization.LineMinimizer: [ ERROR ] Inaccurate G!
by aralz » Thu, 2021-02-11 00:46
0
993 by aralz
Thu, 2021-02-11 00:46
Normal topic using DARC in rosetta
by syntekabio2019 » Thu, 2019-12-12 01:27
0
1,006 by syntekabio2019
Thu, 2019-12-12 01:27
Normal topic Flex_ddG突变设计
by wangtao » Thu, 2022-05-05 02:46
0
1,044 by wangtao
Thu, 2022-05-05 02:46
Normal topic 'Use_filters true' option - failure of AbInitio Relax application
by Corvin » Wed, 2023-11-08 06:34
0
249 by Corvin
Wed, 2023-11-08 06:34
Normal topic Lots of Prepacking Jobs for Snugdock Failing
by katherinemccoy » Tue, 2023-02-28 18:17
0
2,348 by katherinemccoy
Mon, 2023-03-13 19:10
Normal topic Hamiltonian Exchange
by JSK » Mon, 2024-03-18 12:48
0
149 by JSK
Tue, 2024-03-19 09:21
Normal topic Use membrane or non-membrane weights in RosettaCM for a hexon in virus capsid?
by lanselibai » Sat, 2020-04-11 02:10
0
1,004 by lanselibai
Sat, 2020-04-11 02:10
Normal topic Limit on backbone movement in relax?
by SWM » Fri, 2020-01-24 07:35
0
945 by SWM
Fri, 2020-01-24 07:35
Normal topic What is an SS0 predictor?
by ojmel » Fri, 2021-04-02 14:25
0
761 by ojmel
Mon, 2021-04-12 07:50
Normal topic Local docking- should I use KIC?
by seayoung lee » Fri, 2022-05-27 02:45
0
939 by seayoung lee
Fri, 2022-05-27 02:45
Normal topic Broken structure of local docking of replicadock2
by Jun » Thu, 2023-12-28 00:26
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314 by Jun
Thu, 2023-12-28 00:26
Normal topic AbinitioRelax detect_disulf_tolerance
by aarono » Tue, 2020-06-02 00:13
0
946 by aarono
Tue, 2020-06-02 00:13
Normal topic Trehalose
by jpfuenzalidawx » Thu, 2022-09-08 00:49
0
942 by jpfuenzalidawx
Thu, 2022-09-08 00:49
Normal topic clashes created with enzdes
by listofdina » Mon, 2021-08-02 06:51
0
810 by listofdina
Mon, 2021-08-02 06:51
Normal topic snugdock: constrained backbone
by mahendra » Mon, 2022-11-14 02:51
0
1,828 by mahendra
Mon, 2022-11-14 02:51
Normal topic Ligand Docking with ROSETTA
by sc19 » Thu, 2022-07-14 01:32
0
998 by sc19
Thu, 2022-07-14 01:34
Normal topic Errors about rifdock step 15
by ng98 » Thu, 2024-02-01 17:41
0
358 by ng98
Thu, 2024-02-01 17:41
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
0
1,380 by ac.research
Mon, 2017-01-09 00:59
Normal topic metalloprotein ab initio with glutamic acid
by inorgchem » Tue, 2020-06-16 20:45
0
751 by inorgchem
Tue, 2020-06-16 20:45
Normal topic Writing down properties for new atom types
by Corvin » Tue, 2021-01-12 04:30
0
760 by Corvin
Wed, 2021-01-13 04:00
Normal topic Relax in membrane pull my protein out of the membrane
by Martin Floor » Wed, 2022-01-26 07:46
0
1,073 by Martin Floor
Wed, 2022-01-26 07:46
Normal topic Silent File Scores Missing: RNA Protein Complex Predition
by axio23 » Fri, 2023-06-16 05:45
0
423 by axio23
Fri, 2023-06-16 05:45
Normal topic Flex_ddG crashes when attempting to move 2 chains (e.g. chains_to_move = A,C)
by jcampecino » Wed, 2020-05-13 12:22
0
1,117 by jcampecino
Wed, 2020-05-13 12:22
Normal topic Reproduce Robetta's ddg values of interface alanine scan using Rosetta?
by cossio » Mon, 2015-01-19 07:14
0
2,780 by cossio
Mon, 2015-01-19 07:14
Normal topic DDG_monomer ΔΔG question
by asbelx » Fri, 2018-04-20 03:31
0
1,205 by asbelx
Fri, 2018-04-20 03:33
Normal topic Global Docking with carbohydrates
by ChiauShu » Sat, 2020-08-22 20:16
0
992 by ChiauShu
Sat, 2020-08-22 20:16
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
0
1,811 by David Hoover
Mon, 2014-04-21 06:47
Normal topic Creating fragment files for proteins less than 27 aa in length
by Poladu » Tue, 2021-01-26 07:50
0
893 by Poladu
Tue, 2021-01-26 07:50
Normal topic Antibody Structure Prediction - Error on antibody_H3 step: "Option matching -antibody:remodel not found in command line"
by ramon-arg » Mon, 2023-07-24 17:56
0
343 by ramon-arg
Mon, 2023-07-24 17:56
Normal topic comparative modelling of a complex
by sdh_h » Sun, 2017-12-17 06:07
0
1,113 by sdh_h
Sun, 2017-12-17 06:07
Normal topic Metal Ion in symmetric design
by tschiex » Wed, 2020-07-08 05:28
0
915 by tschiex
Wed, 2020-07-08 05:28
Normal topic Can remodel really handle multiple insertions in one simulation?
by lanselibai » Sat, 2019-12-28 12:51
0
927 by lanselibai
Sat, 2019-12-28 12:51
Normal topic minimize_ppi.mpi.linuxgccrelease doesn't use jd2?
by e3lm » Tue, 2022-05-17 11:58
0
1,020 by e3lm
Tue, 2022-05-17 11:58
Normal topic Error with SapScoreMetric (SimpleMetric sap_score not found in basic::datacache::DataMap)
by Seongsung » Fri, 2023-11-24 05:09
0
282 by Seongsung
Fri, 2023-11-24 13:14
Normal topic denovo_density don't output a pdb file
by ylwang » Sun, 2018-11-18 17:51
0
1,090 by ylwang
Sun, 2018-11-18 17:51
Normal topic mp_transform optimize with franklin2019 scoring
by benhardy » Thu, 2020-05-28 08:35
0
1,285 by benhardy
Thu, 2020-05-28 08:45
Normal topic Remodel's problem in treatment with non-protein residues
by Corvin » Mon, 2021-12-13 09:07
0
1,008 by Corvin
Mon, 2021-12-13 09:07
Normal topic Error with xml script
by almeida85 » Tue, 2023-03-28 01:53
0
634 by almeida85
Tue, 2023-05-16 01:00
Normal topic Patch to impose tetrahedral geometry on backbone O atom
by georg » Thu, 2021-04-08 09:30
0
786 by georg
Thu, 2021-04-08 09:31
Normal topic RemodelMover and Input Pose
by ozyo » Tue, 2020-12-29 09:41
0
928 by ozyo
Tue, 2020-12-29 09:41
Normal topic I need help with cst file the paper: De Novo Computational Design of Retro-Aldol Enzymes
by Wenithor » Thu, 2022-01-06 12:20
0
1,143 by Wenithor
Thu, 2022-01-06 12:20
Normal topic Simple_cycpep_predict with crosslinker BBMB
by Ken » Tue, 2023-05-09 08:52
0
511 by Ken
Tue, 2023-05-09 08:52
Normal topic Pepspec Anchor Dock
by Soler » Fri, 2020-09-18 08:09
0
1,055 by Soler
Fri, 2020-09-18 08:09
Normal topic Symmetry definition question
by mrconde96 » Sun, 2022-10-02 05:34
0
1,412 by mrconde96
Sun, 2022-10-02 05:34
Normal topic Flexpepdock I_hb scoring term
by mbakalar » Fri, 2018-08-31 13:05
0
1,187 by mbakalar
Fri, 2018-08-31 13:06
Normal topic General question regarding ligand-docking
by Alison_Yajie » Thu, 2020-05-07 09:48
0
838 by Alison_Yajie
Thu, 2020-05-07 09:48
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