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Rosetta 3 - Applications
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problem with fixed_membrane option of membrane abinitio by yescalona » Thu, 2013-01-17 15:42 |
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3,209 |
by smlewis Mon, 2014-04-21 06:47 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
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2,302 |
by smlewis Wed, 2018-12-12 16:51 |
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ligand_docking_error by Alison_Yajie » Mon, 2020-04-20 12:27 |
3 |
1,825 |
by YuFei Sat, 2020-05-30 00:12 |
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revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
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3,737 |
by rmoretti Tue, 2016-07-12 09:30 |
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The confussion about an example in tutorial in Rosetta Virtual Workshop 2020 by ldx022 » Tue, 2022-11-29 04:58 |
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3,699 |
by ldx022 Tue, 2022-11-29 08:38 |
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Problems with always_constrained_relax_script by wsgosal » Wed, 2013-05-29 04:39 |
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4,398 |
by rmoretti Mon, 2014-04-21 06:47 |
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High energies after loopmodel run by michki » Thu, 2014-05-08 05:14 |
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3,598 |
by rmoretti Mon, 2014-05-12 15:16 |
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xyzVector error in Enzyme design by ajmbarbosa » Tue, 2016-01-05 09:46 |
3 |
3,822 |
by rmoretti Fri, 2016-06-17 10:36 |
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Running RosettaHoles2 by weehee » Wed, 2013-02-13 09:35 |
3 |
3,314 |
by weehee Mon, 2014-04-21 06:47 |
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Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
3 |
3,785 |
by rmoretti Wed, 2015-09-02 12:33 |
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RosettaCM input file for running on Stampede by smathersc » Wed, 2017-01-18 16:12 |
3 |
2,807 |
by rmoretti Thu, 2017-02-02 09:02 |
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Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB by rlwoltz » Thu, 2019-01-24 19:43 |
3 |
3,517 |
by bjharris Sun, 2020-08-23 14:03 |
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DockingProtocol by Soler » Fri, 2022-02-11 00:12 |
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1,291 |
by gezmi Tue, 2022-02-15 21:47 |
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ddg_monomer.mpi by gw » Thu, 2011-10-27 16:45 |
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3,784 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking membrane ions and water by jrcf » Tue, 2017-02-07 15:47 |
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2,851 |
by smlewis Wed, 2017-02-15 07:43 |
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RosettaDock 4.0 ambiguous ERROR by sam_dc » Fri, 2022-03-18 09:36 |
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1,402 |
by rmoretti Tue, 2022-03-22 09:10 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
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1,665 |
by ctqwong Mon, 2020-07-27 01:48 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
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3,252 |
by brspurri Sat, 2017-08-26 07:08 |
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What is a rational minimal value for the "-nstruct" option by Sunyp_IM » Fri, 2020-05-22 01:28 |
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1,747 |
by nannemdp Sun, 2020-05-24 14:46 |
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partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
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3,822 |
by smlewis Mon, 2014-04-21 06:47 |
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issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
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2,026 |
by He Xiao Sun, 2021-04-11 19:29 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
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3,456 |
by rmoretti Tue, 2016-07-12 09:41 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
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3,275 |
by lanselibai Tue, 2015-01-13 14:25 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
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2,619 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"? by lanselibai » Fri, 2014-10-17 06:06 |
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20,650 |
by rmoretti Fri, 2014-10-17 10:17 |
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RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
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2,613 |
by smlewis Mon, 2017-01-23 06:26 |
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Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
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4,601 |
by rmoretti Mon, 2014-04-21 06:47 |
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Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
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2,551 |
by rmoretti Tue, 2017-08-22 09:03 |
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relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
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1,824 |
by smlewis Thu, 2020-05-21 21:05 |
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Why is proline hydroxylated？ by kwonglynn » Tue, 2013-06-25 02:38 |
3 |
4,847 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
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4,545 |
by rmoretti Wed, 2014-07-02 16:55 |
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Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
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1,507 |
by vizcarra Thu, 2021-08-26 10:16 |
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dihedral_between_bonded_children: atoms are not both my children! by pdbb » Fri, 2013-04-05 06:40 |
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3,018 |
by smlewis Mon, 2014-04-21 06:47 |
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Error when running cluster by aloshbau » Wed, 2013-05-01 20:45 |
3 |
4,267 |
by rmoretti Mon, 2014-04-21 06:47 |
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cluster.mpi.linuxgccrelease failed by fred » Mon, 2014-02-24 12:11 |
3 |
7,615 |
by fred Thu, 2014-03-27 11:29 |
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Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
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2,940 |
by sn Mon, 2017-03-06 10:03 |
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clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
3 |
1,974 |
by rmoretti Tue, 2020-07-28 08:24 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
3 |
2,570 |
by rmoretti Mon, 2018-11-12 14:35 |
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RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
3 |
1,427 |
by everyday847 Wed, 2020-12-09 21:46 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
3 |
3,555 |
by rmoretti Mon, 2014-04-21 06:48 |
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Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
3 |
3,861 |
by ahonegger Mon, 2014-04-21 06:47 |
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RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
2 |
3,724 |
by jtmacd Fri, 2015-12-04 03:11 |
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Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
2 |
2,650 |
by rmoretti Tue, 2017-03-28 08:51 |
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Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
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1,842 |
by johnnytam100 Tue, 2019-05-21 22:33 |
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how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
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1,227 |
by qq7678500549 Sun, 2020-08-09 18:59 |
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MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
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3,336 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Including ab-initio predicted model in fragment library generation by ashu4487 » Thu, 2016-12-08 17:49 |
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2,105 |
by ashu4487 Sun, 2016-12-11 19:03 |
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rosetta_cm segfault by browns02 » Fri, 2021-07-09 13:35 |
2 |
986 |
by rmoretti Fri, 2021-07-09 15:05 |
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ddG filter gives deltaG calculation number? by jarod » Tue, 2013-05-28 23:43 |
2 |
3,616 |
by jarod Mon, 2014-04-21 06:47 |
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Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
2 |
2,635 |
by allan.ferrari Fri, 2015-08-28 12:07 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
2 |
1,384 |
by Kotimedidhi Mon, 2020-06-22 16:19 |
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cluster.mpi running in MPI mode? by sacch » Fri, 2011-11-18 23:30 |
2 |
4,122 |
by sacch Mon, 2014-04-21 06:47 |
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Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
2 |
2,449 |
by kalabharath Wed, 2015-04-29 16:21 |
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Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
2 |
1,376 |
by tuleshwori Thu, 2020-05-21 02:08 |
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Floppytail modelling by felipet » Fri, 2011-06-24 09:23 |
2 |
3,452 |
by felipet Mon, 2014-04-21 06:47 |
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RosettaSurface in 3.4? by skovacs » Tue, 2012-07-10 16:02 |
2 |
2,759 |
by mpacella Mon, 2014-04-21 06:47 |
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Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
2 |
2,699 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
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RosettaScript Segmentation Fault (crash log attached) by chrisHKL » Thu, 2020-03-05 07:21 |
2 |
1,882 |
by chrisHKL Thu, 2020-03-05 09:11 |
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Disulfide Bonds in Loop Modeling by code_Monkey » Mon, 2021-05-03 08:27 |
2 |
1,118 |
by code_Monkey Thu, 2021-05-06 07:14 |
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ddG Monomer Low Res Protocol Convergence by harshkhare » Thu, 2012-03-01 00:45 |
2 |
3,548 |
by harshkhare Mon, 2014-04-21 06:47 |
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Reproducing the exact result using information from previos run by nawsad » Thu, 2013-03-14 12:05 |
2 |
2,347 |
by nawsad Mon, 2014-04-21 06:47 |
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FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
2 |
2,978 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
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1,513 |
by bjharris Thu, 2020-07-02 11:09 |
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How do I change the default Compiler for Rosetta？ by pagumaaaaa » Wed, 2022-03-16 00:23 |
2 |
995 |
by pagumaaaaa Thu, 2022-03-24 22:40 |
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-loops:fa_input not found in command line top-level context by swarekwood » Thu, 2017-08-24 03:15 |
2 |
2,261 |
by swarekwood Fri, 2017-08-25 05:08 |
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ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
2 |
1,462 |
by Ruska322 Fri, 2019-09-06 07:13 |
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ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
2 |
1,322 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
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relax constraints not minimized by m_grisewood » Fri, 2012-08-10 08:31 |
2 |
3,387 |
by m_grisewood Mon, 2014-04-21 06:47 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
2 |
3,519 |
by Pernille Thu, 2014-07-03 07:21 |
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Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
2 |
2,670 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
2 |
2,871 |
by attesor Tue, 2015-11-17 07:36 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
2 |
2,555 |
by David Weis Mon, 2017-03-13 06:40 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
2 |
1,610 |
by Martin Floor Tue, 2020-01-21 11:15 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
2 |
2,724 |
by Pernille Wed, 2014-10-08 10:41 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
2 |
2,799 |
by mintseris Wed, 2015-06-24 22:04 |
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How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
2 |
1,380 |
by dnamkr Fri, 2022-04-22 17:00 |
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high-res docking by tfliu » Mon, 2013-07-15 02:49 |
2 |
3,042 |
by tfliu Mon, 2014-04-21 06:48 |
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error extracting PDB from silent from AbinitioRelax with constraints by attesor » Wed, 2017-06-14 04:15 |
2 |
2,045 |
by smlewis Fri, 2017-06-16 07:35 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
2 |
2,527 |
by rmoretti Fri, 2015-01-02 09:43 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
2 |
1,390 |
by jlawrie Wed, 2020-08-12 08:57 |
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not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
2 |
1,499 |
by xinmiaohe Mon, 2020-10-19 13:18 |
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Ligand docking and protein design of an internal pocket in a protein with a cofactor by oerbilgin » Mon, 2011-06-20 13:55 |
2 |
4,488 |
by frichter Mon, 2014-04-21 06:47 |
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How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
2 |
3,170 |
by ahonegger Mon, 2014-05-12 09:08 |
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AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
2 |
1,507 |
by vmulligan Thu, 2019-06-13 14:59 |
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InterfaceAnalyzer dSasa calculation by mintseris » Wed, 2015-09-02 09:43 |
2 |
4,042 |
by jadolfbr Thu, 2015-09-03 16:18 |
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How to correctly incorporate constraint information into ab initio structure prediction? by johnnytam100 » Tue, 2019-02-19 03:13 |
2 |
1,885 |
by johnnytam100 Fri, 2019-03-01 01:36 |
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Ligand atom RMSD calculation by lkrathn » Wed, 2013-08-14 21:25 |
2 |
4,365 |
by lkrathn Mon, 2014-04-21 06:48 |
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Warnings during relax by cossio » Thu, 2018-10-11 14:42 |
2 |
2,697 |
by rmoretti Mon, 2019-11-04 13:56 |
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Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1 by cm21 » Wed, 2020-05-20 08:55 |
2 |
1,408 |
by cm21 Wed, 2020-05-20 11:22 |
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The energy terms in InterfaceAnalyzer by Sunyp_IM » Tue, 2021-11-02 18:43 |
2 |
1,027 |
by zivben Sat, 2021-11-13 04:49 |
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Unable to run Rosetta LoopModeling application by BDBorrillo » Tue, 2011-07-19 14:06 |
2 |
5,040 |
by BDBorrillo Mon, 2014-04-21 06:47 |
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Problems with fixbb in Rosetta 3.5 by mdidonato » Wed, 2014-06-04 13:56 |
2 |
2,398 |
by mdidonato Wed, 2014-06-04 14:55 |
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Scoring docking error by almeida85 » Wed, 2020-09-02 01:32 |
2 |
1,319 |
by almeida85 Wed, 2020-09-02 06:14 |
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Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
2 |
3,165 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
2 |
3,731 |
by jrcf Mon, 2015-09-21 11:10 |
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Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
2 |
3,577 |
by mumdonar Mon, 2014-04-21 06:48 |
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where is generate_ligens.linuxgccrelease? by Nicole Deng » Thu, 2020-12-03 00:00 |
2 |
1,279 |
by Nicole Deng Fri, 2020-12-18 00:28 |
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Compiling Rosetta 3.3 on Linux Mint by proteinproteindock » Thu, 2011-09-01 16:05 |
2 |
3,395 |
by proteinproteindock Mon, 2014-04-21 06:47 |
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printing our per-residue energies including H-bonding energies by vijayan » Tue, 2013-07-02 08:51 |
2 |
3,461 |
by rmoretti Mon, 2014-04-21 06:48 |
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Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
2 |
2,986 |
by brspurri Thu, 2017-06-01 10:58 |
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