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Rosetta 3 - Applications
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Homology Modelling with cofactors by Derek Smith » Thu, 2015-07-09 08:24 |
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3,920 |
by Derek Smith Wed, 2016-02-03 05:47 |
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how to make "static" built binaries use multiple cpus like "mpi"? by Danielsebas » Wed, 2019-09-18 06:41 |
3 |
2,003 |
by rmoretti Wed, 2019-09-18 10:21 |
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Unable to locate the "compute_ddg.py" file and running the RosettaMP protocol by Sajjad » Mon, 2022-11-28 14:09 |
3 |
3,930 |
by Sajjad Wed, 2022-11-30 11:50 |
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Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM by ajkal » Fri, 2017-04-14 08:44 |
3 |
2,986 |
by rmoretti Thu, 2017-04-20 13:59 |
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strange effect in: SymDock.linuxgccrelease by ast » Tue, 2013-06-11 11:05 |
3 |
3,379 |
by ast Mon, 2014-04-21 06:48 |
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make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
3 |
4,610 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking to TM protein plus lipid bilayer by renedominik » Tue, 2019-03-12 06:58 |
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2,503 |
by renedominik Tue, 2020-02-18 01:36 |
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ab initio by malkeet.singh » Thu, 2018-05-10 05:34 |
3 |
2,791 |
by malkeet.singh Mon, 2018-05-21 04:26 |
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The error of InterfaceAnalyzer by asbelx » Thu, 2017-12-21 19:04 |
3 |
3,225 |
by smlewis Sat, 2017-12-23 15:56 |
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Missing common atom definitions in constraints by ic3reyes » Sat, 2011-06-11 13:09 |
3 |
4,613 |
by smlewis Mon, 2014-04-21 06:47 |
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comparative modeling of protein-ligand complex by tevang » Mon, 2013-09-09 09:06 |
3 |
3,874 |
by rmoretti Mon, 2014-04-21 06:48 |
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folding ectodomain in membrane ab initio by freedman » Mon, 2015-05-25 21:09 |
3 |
3,394 |
by rmoretti Fri, 2015-06-19 13:53 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Thu, 2011-02-17 12:29 |
3 |
4,277 |
by fukamitka Mon, 2014-04-21 06:47 |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
3,474 |
by xun Mon, 2014-04-21 06:47 |
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Lammps or RosettaSurface by StevPChem » Fri, 2016-06-10 10:13 |
3 |
3,373 |
by Anpu Tue, 2018-09-25 18:53 |
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fragment_picker with fasta only by gw » Tue, 2011-11-15 13:20 |
3 |
3,893 |
by gw Mon, 2014-04-21 06:47 |
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Extract PDB structures from database by cossio » Mon, 2018-01-29 09:30 |
3 |
3,027 |
by rmoretti Fri, 2018-11-23 11:23 |
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Modeling of side-chains onto membrane ab initio cluster? by akfried » Thu, 2011-06-23 04:03 |
3 |
3,568 |
by nkemjika Mon, 2014-04-21 06:47 |
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How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI by kingljy » Sun, 2017-09-24 18:37 |
3 |
2,997 |
by rmoretti Tue, 2017-10-10 09:58 |
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"Install_dependencies.pl" gives "Aborted" when downloading "nr" database? by Danielsebas » Sat, 2019-09-14 08:53 |
3 |
1,682 |
by danpf Mon, 2019-09-16 09:51 |
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problem with fixed_membrane option of membrane abinitio by yescalona » Thu, 2013-01-17 15:42 |
3 |
3,110 |
by smlewis Mon, 2014-04-21 06:47 |
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Does it make sense if I do backrub after sequence design? by johnnytam100 » Thu, 2019-08-15 05:15 |
3 |
1,780 |
by johnnytam100 Fri, 2019-08-16 00:20 |
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RosettaCM or FastRelax? by Tianyang89 » Wed, 2020-09-23 07:46 |
3 |
1,514 |
by danpf Thu, 2020-09-24 13:44 |
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Syntax for the alignment file in "minirosetta comparative modeling" by lanselibai » Thu, 2014-10-16 15:29 |
3 |
4,049 |
by lanselibai Thu, 2014-10-23 03:26 |
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Constraints in RosettaCM by kbuhr » Fri, 2015-07-31 06:55 |
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3,646 |
by kbuhr Mon, 2016-03-28 01:08 |
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Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex by benhardy » Mon, 2020-06-15 09:33 |
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1,558 |
by benhardy Fri, 2020-06-19 07:55 |
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Running RosettaHoles2 by weehee » Wed, 2013-02-13 09:35 |
3 |
3,204 |
by weehee Mon, 2014-04-21 06:47 |
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Using Rosetta Docking for nucleic acids by Adrien Guilhot » Thu, 2011-04-28 06:16 |
3 |
4,563 |
by Adrien Guilhot Mon, 2014-04-21 06:47 |
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analysis of clustering by loris.moretti » Thu, 2012-04-19 02:52 |
3 |
6,453 |
by rmoretti Mon, 2014-04-21 06:47 |
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scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
3 |
3,142 |
by rmoretti Tue, 2016-07-12 09:05 |
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KIC with fragments versus Next generation KIC by Loki01 » Fri, 2018-09-07 05:06 |
3 |
2,419 |
by smlewis Mon, 2018-09-10 11:48 |
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Transmembrane helix fold-and-dock? by sarah_b » Tue, 2020-05-12 02:09 |
3 |
1,715 |
by jkleman Tue, 2020-05-19 15:02 |
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Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
3 |
3,415 |
by Marius1987 Mon, 2016-03-14 04:34 |
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Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
3 |
3,001 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
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Problems with always_constrained_relax_script by wsgosal » Wed, 2013-05-29 04:39 |
3 |
4,294 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
3 |
1,857 |
by Danielsebas Thu, 2019-09-05 03:35 |
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De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
3 |
3,087 |
by dee2711453 Fri, 2016-03-11 21:32 |
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The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
3 |
2,608 |
by rmoretti Thu, 2018-06-28 12:58 |
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Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
2 |
2,853 |
by brspurri Thu, 2017-06-01 10:58 |
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Fold and Dock - chains not in contact by arthuc01 » Wed, 2012-06-13 01:45 |
2 |
2,712 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
2 |
3,486 |
by mumdonar Mon, 2014-04-21 06:48 |
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where is generate_ligens.linuxgccrelease? by Nicole Deng » Thu, 2020-12-03 00:00 |
2 |
1,164 |
by Nicole Deng Fri, 2020-12-18 00:28 |
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D-amino acids tripeptide docking. by sam_dc » Sat, 2021-07-03 08:48 |
2 |
944 |
by vmulligan Tue, 2021-07-06 08:27 |
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Docking seems to not parse the -nstruct flag by rosend » Tue, 2015-11-17 12:01 |
2 |
3,309 |
by rosend Tue, 2015-11-17 12:12 |
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DDG_monomer application by shadrinams » Mon, 2018-02-12 12:14 |
2 |
2,582 |
by shadrinams Wed, 2018-03-14 07:46 |
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Error when trying docking protocol with different ligand by scyphs » Wed, 2020-08-05 04:37 |
2 |
1,146 |
by scyphs Mon, 2020-08-10 08:09 |
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Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations by yliang20 » Wed, 2022-06-15 11:26 |
2 |
545 |
by yliang20 Wed, 2022-06-15 13:46 |
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where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
2 |
2,741 |
by lchen Mon, 2014-04-21 06:47 |
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protein-ligand docking rescoring with interfaceAnalyzer by syntekabio2019 » Sat, 2020-12-19 03:59 |
2 |
1,030 |
by syntekabio2019 Sun, 2020-12-20 21:10 |
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The Usage of motifgraft by Sunyp_IM » Sun, 2017-11-19 20:22 |
2 |
2,767 |
by Sunyp_IM Mon, 2017-11-20 19:20 |
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Chemically bound ligand connection error by tsztain » Tue, 2019-01-01 18:40 |
2 |
1,814 |
by tsztain Mon, 2019-02-18 09:55 |
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Speed problem when running RosettaLigand ligand docking by Nicole Deng » Tue, 2019-10-08 04:29 |
2 |
1,731 |
by Nicole Deng Tue, 2020-11-03 19:07 |
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symmetric fixbb design with design_hpatch by sdh_h » Sat, 2013-02-02 01:48 |
2 |
2,550 |
by ronj Mon, 2014-04-21 06:47 |
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Idealize in Rosetta 3.3 by jadolfbr » Tue, 2011-12-06 11:59 |
2 |
2,842 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Element 'trRosettaProtocol': This element is not expected. by csaylan » Tue, 2021-04-20 14:21 |
2 |
953 |
by csaylan Tue, 2021-04-20 16:13 |
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homology modeling with threading says length mismatch between sequence and alignment by rqliang » Thu, 2015-08-06 11:46 |
2 |
2,518 |
by jharamesh Sat, 2015-08-08 19:51 |
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minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
2 |
3,153 |
by alexn Mon, 2014-04-21 06:47 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
2 |
3,417 |
by eskici Mon, 2014-04-21 06:47 |
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Packstat score in InterfaceAnalyzer by Vedasheersh » Fri, 2017-01-27 06:21 |
2 |
2,398 |
by smlewis Fri, 2017-01-27 07:20 |
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Alanine Scanning for 1 Protein (no interface) by mags33 » Fri, 2019-10-25 10:08 |
2 |
1,818 |
by mags33 Wed, 2019-11-06 09:35 |
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How to sort a Silent File based on RMSD by JadAbbass » Sun, 2013-08-04 14:40 |
2 |
3,110 |
by lanselibai Mon, 2014-10-06 15:30 |
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flexpepdock_score_only by ays » Sun, 2014-09-21 06:17 |
2 |
2,263 |
by ays Tue, 2014-09-30 08:31 |
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SPLINE EPR_DISTANCE Constraint Error by mmw88 » Tue, 2018-09-18 14:39 |
2 |
1,974 |
by rmoretti Thu, 2018-09-20 09:19 |
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RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow? by brspurri » Thu, 2020-05-14 11:15 |
2 |
1,226 |
by brspurri Thu, 2020-05-14 12:24 |
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Error in a new docking by jrcf » Wed, 2017-05-17 19:26 |
2 |
3,418 |
by tingting Tue, 2022-03-15 23:55 |
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Rosetta_cm Segmentation Fault by gszwabowski » Thu, 2019-06-20 12:55 |
2 |
1,985 |
by gszwabowski Wed, 2019-06-26 10:25 |
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Structure determination combining X-ray diffraction data and NMR chemical shift by MajorID » Mon, 2011-10-17 19:55 |
2 |
3,392 |
by rmoretti Mon, 2014-04-21 06:47 |
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cartfrag_overlap error while running hybridize protocol by sn » Thu, 2017-12-21 10:24 |
2 |
1,814 |
by dnamkr Mon, 2019-12-30 11:43 |
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Error: in membrane docking : Cannot split pose by membrane jump! Quitting... by Astghik » Tue, 2020-11-24 05:27 |
2 |
1,133 |
by Astghik Thu, 2020-12-03 02:35 |
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Fragment files for membrane_abinitio application by sumukh21 » Tue, 2011-02-15 17:23 |
2 |
3,052 |
by sumukh21 Mon, 2014-04-21 06:47 |
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Rosetta Script for ddg_monomer protocol 16 by cossio » Thu, 2018-01-25 08:23 |
2 |
2,010 |
by cossio Sun, 2018-03-11 09:12 |
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Protein Ensemble RosettaLigand Docking by sam_dc » Fri, 2021-03-26 10:18 |
2 |
1,029 |
by sam_dc Fri, 2021-03-26 12:04 |
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the meaning of total_score in docking by libai2098 » Mon, 2011-03-21 05:46 |
2 |
4,148 |
by libai2098 Mon, 2014-04-21 06:47 |
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BUG REPORT: Remodel Resfile ERROR: LEU was added more than once? by daniloboskovic » Wed, 2020-04-29 01:17 |
2 |
1,327 |
by daniloboskovic Wed, 2020-04-29 05:51 |
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limit_cluster_size default value by sacch » Thu, 2011-11-24 17:57 |
2 |
2,538 |
by sacch Mon, 2014-04-21 06:47 |
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Docking-RMS value nan by jlawrie » Wed, 2020-08-12 07:03 |
2 |
1,208 |
by jlawrie Wed, 2020-08-12 07:27 |
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r_frag_quality by ii_cnr » Mon, 2021-04-12 03:06 |
2 |
932 |
by ii_cnr Mon, 2021-04-12 23:44 |
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ab initio modelling - what to do next? by krlitros87 » Thu, 2014-10-16 13:05 |
2 |
2,973 |
by krlitros87 Wed, 2014-10-22 09:31 |
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score:weights for fixbb application in Rosetta 3.5 by tylerborrman » Tue, 2015-07-28 14:16 |
2 |
2,394 |
by tylerborrman Wed, 2015-09-23 10:51 |
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Altering substrate specificity by bp » Thu, 2016-12-22 02:45 |
2 |
2,223 |
by bp Thu, 2016-12-22 07:54 |
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Model monomer to fit cryo density map of a filament by BuddySphinx » Wed, 2018-12-12 18:58 |
2 |
1,643 |
by BuddySphinx Sun, 2018-12-30 16:49 |
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flexpep docking, select the decoy to do the further docking, questions by michael_luntan » Fri, 2011-04-22 04:43 |
2 |
3,136 |
by michael_luntan Mon, 2014-04-21 06:47 |
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Enzdes scorefile lost, can I recreate it by eyong123 » Wed, 2015-04-15 05:55 |
2 |
2,325 |
by eyong123 Wed, 2015-04-22 11:33 |
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How to restart RASREC run by aep » Fri, 2016-07-01 04:39 |
2 |
2,016 |
by aep Fri, 2016-07-01 06:54 |
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RosettaCM hybridize mover error after fragment picking by amorin » Thu, 2018-09-06 11:03 |
2 |
1,909 |
by dnamkr Thu, 2019-12-26 10:22 |
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How to run partial_thread in RosettaCM when residure are more than 9999? by lanselibai » Mon, 2020-05-11 22:43 |
2 |
1,554 |
by lanselibai Tue, 2020-05-12 20:25 |
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hbond_sr_bb and hbond_lr_bb for different chains by tylerborrman » Tue, 2020-10-13 13:41 |
2 |
1,247 |
by tylerborrman Tue, 2021-02-09 16:33 |
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How to add a residue to one chain of an existing structure? by sn » Mon, 2017-04-17 09:34 |
2 |
2,583 |
by sn Thu, 2017-04-20 21:43 |
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protein interface design by Negarsardar » Tue, 2019-05-28 07:04 |
2 |
1,677 |
by Negarsardar Thu, 2019-05-30 23:46 |
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Successful RosettaCM? by jlawrie » Wed, 2020-08-19 06:53 |
2 |
1,249 |
by jlawrie Thu, 2020-08-20 11:00 |
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Filling the missing loops by code_Monkey » Tue, 2021-04-27 07:44 |
2 |
983 |
by code_Monkey Tue, 2021-04-27 12:11 |
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ddG filter gives deltaG calculation number? by jarod » Tue, 2013-05-28 23:43 |
2 |
3,514 |
by jarod Mon, 2014-04-21 06:47 |
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Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved] by loreseeker » Wed, 2011-09-14 08:13 |
2 |
3,253 |
by loreseeker Mon, 2014-04-21 06:47 |
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Disulfide prediction from primary sequence by zcrook » Wed, 2014-11-12 14:44 |
2 |
4,455 |
by zcrook Tue, 2014-11-25 10:27 |
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Use NMR ensemble in protein-protein docking? by cossio » Sun, 2015-09-13 07:57 |
2 |
2,731 |
by cossio Tue, 2015-09-15 12:48 |
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Reproducing the exact result using information from previos run by nawsad » Thu, 2013-03-14 12:05 |
2 |
2,255 |
by nawsad Mon, 2014-04-21 06:47 |
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clean_pdb.py of Rosetta VS cleanATOM of PyRosetta by lanselibai » Wed, 2014-09-24 03:02 |
2 |
4,512 |
by lanselibai Wed, 2014-09-24 13:21 |
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Trouble enforcing a disulfide in loop building by chelsell » Sun, 2015-05-10 16:31 |
2 |
3,195 |
by chelsell Wed, 2015-05-27 14:36 |
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Trouble running Enzyme Design application by danaitop » Thu, 2016-08-11 13:34 |
2 |
2,325 |
by rmoretti Mon, 2016-09-05 11:10 |
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Rosetta fragment tools installation error by Danielsebas » Thu, 2019-08-29 02:17 |
2 |
1,540 |
by Danielsebas Sun, 2019-09-01 02:38 |
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