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Rosetta 3 - Applications
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Constraints in RosettaCM by kbuhr » Fri, 2015-07-31 06:55 |
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4,250 |
by kbuhr Mon, 2016-03-28 01:08 |
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Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex by benhardy » Mon, 2020-06-15 09:33 |
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2,221 |
by benhardy Fri, 2020-06-19 07:55 |
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Does it make sense if I do backrub after sequence design? by johnnytam100 » Thu, 2019-08-15 05:15 |
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2,374 |
by johnnytam100 Fri, 2019-08-16 00:20 |
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RosettaCM or FastRelax? by Tianyang89 » Wed, 2020-09-23 07:46 |
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2,211 |
by danpf Thu, 2020-09-24 13:44 |
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score to use for picking top docking solutions? by sudhar » Tue, 2011-06-14 06:47 |
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5,980 |
by weitzner Mon, 2014-04-21 06:47 |
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Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
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3,963 |
by Marius1987 Mon, 2016-03-14 04:34 |
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Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
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3,684 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
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RosettaAntibody by mpendleton » Mon, 2011-04-04 10:27 |
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5,067 |
by jianqing Mon, 2014-04-21 06:47 |
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scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
3 |
3,738 |
by rmoretti Tue, 2016-07-12 09:05 |
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KIC with fragments versus Next generation KIC by Loki01 » Fri, 2018-09-07 05:06 |
3 |
2,989 |
by smlewis Mon, 2018-09-10 11:48 |
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Transmembrane helix fold-and-dock? by sarah_b » Tue, 2020-05-12 02:09 |
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2,377 |
by jkleman Tue, 2020-05-19 15:02 |
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ERROR: no fragment to compute secondary structure by byin » Sun, 2011-08-07 23:55 |
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4,601 |
by smlewis Mon, 2014-04-21 06:47 |
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De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
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3,679 |
by dee2711453 Fri, 2016-03-11 21:32 |
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The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
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3,275 |
by rmoretti Thu, 2018-06-28 12:58 |
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Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
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2,489 |
by Danielsebas Thu, 2019-09-05 03:35 |
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Abrelax - Dunbrack02.lib.bin missing by omirus » Sun, 2011-09-18 06:30 |
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5,010 |
by smlewis Mon, 2014-04-21 06:47 |
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what does initialize_rigid_body_dofs do? by attesor » Mon, 2015-10-26 05:12 |
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4,016 |
by rmoretti Tue, 2015-11-10 11:35 |
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assymetric dymer modelling with comparative and ab initio by marcia » Mon, 2013-10-14 08:33 |
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4,949 |
by rmoretti Mon, 2014-04-21 06:48 |
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Docking one protein into interface between two other proteins by Cheems » Sat, 2023-05-06 09:49 |
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902 |
by rmoretti Mon, 2023-05-08 13:14 |
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Enzdes constraint file not defined correctly by eyong123 » Fri, 2015-03-27 07:16 |
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3,907 |
by rmoretti Thu, 2015-04-16 10:38 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
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4,104 |
by rmoretti Mon, 2014-05-12 08:45 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
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3,995 |
by smlewis Mon, 2014-04-21 06:47 |
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Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
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3,915 |
by G Mustafa Thu, 2018-10-18 05:31 |
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How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
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3,371 |
by rmoretti Wed, 2017-03-01 13:10 |
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Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
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3,345 |
by rmoretti Thu, 2017-08-24 11:00 |
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Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
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4,235 |
by ahonegger Mon, 2014-04-21 06:47 |
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NCAA attached at two points by tsztain » Wed, 2021-06-16 15:20 |
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1,874 |
by matteoferla Sat, 2021-06-19 03:07 |
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ddg monomer vs pmut scan by dave » Tue, 2014-03-04 10:18 |
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4,549 |
by smlewis Fri, 2014-03-07 13:02 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
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4,463 |
by matteoferla Tue, 2018-10-30 02:54 |
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loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
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4,273 |
by rmoretti Mon, 2014-04-21 06:47 |
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Ligand dock analysis by sacch » Tue, 2012-05-22 01:20 |
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3,943 |
by glemmon Mon, 2014-04-21 06:47 |
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FlexPepDocking with GDP-bound protein by LI » Sun, 2011-06-12 20:02 |
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4,813 |
by rmoretti Mon, 2014-04-21 06:47 |
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Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
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3,809 |
by brspurri Fri, 2017-03-24 11:35 |
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protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
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3,645 |
by ajasja Wed, 2019-05-15 15:40 |
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No Space by jrcf » Mon, 2016-01-11 16:18 |
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3,546 |
by jrcf Fri, 2016-02-12 16:42 |
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Discrepancy between the total pose energy and sum of per residue energies by vijayan » Tue, 2013-07-02 07:24 |
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4,573 |
by rmoretti Mon, 2014-04-21 06:48 |
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relax with resfile by gw » Fri, 2011-08-05 10:57 |
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6,256 |
by nannemdp Mon, 2014-04-21 06:47 |
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How to preserve ACE/NME termini? by nitroamos » Tue, 2018-05-22 13:07 |
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3,818 |
by rmoretti Thu, 2018-06-28 12:44 |
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Loop prediction by yzhou » Thu, 2013-07-18 14:24 |
3 |
4,376 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
3 |
2,965 |
by smlewis Mon, 2018-10-15 08:42 |
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ddg_monomer: what is the theoretical solution condition for the scoring? by lanselibai » Sat, 2016-04-30 03:26 |
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3,933 |
by smlewis Mon, 2016-05-02 08:20 |
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Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
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4,187 |
by smlewis Mon, 2014-04-21 06:47 |
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Error encountered during Rosetta loop modeling by max » Tue, 2014-11-25 02:17 |
3 |
3,887 |
by max Thu, 2014-11-27 02:56 |
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Loop modeling with constraints by agctomer » Sat, 2021-03-20 03:53 |
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2,014 |
by agctomer Thu, 2021-04-08 07:37 |
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relax a protein with phosphorylated serine residue by zruan » Thu, 2018-02-01 09:18 |
3 |
3,018 |
by rmoretti Tue, 2018-02-06 09:47 |
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strange effect in: SymDock.linuxgccrelease by ast » Tue, 2013-06-11 11:05 |
3 |
3,902 |
by ast Mon, 2014-04-21 06:48 |
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make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
3 |
5,264 |
by smlewis Mon, 2014-04-21 06:47 |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
4,031 |
by xun Mon, 2014-04-21 06:47 |
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flexpepdock flag "-packing:unboundrot" by gw » Mon, 2011-07-11 12:23 |
2 |
4,138 |
by Ora Schueler-Furman Mon, 2014-04-21 06:47 |
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creating compound task mover by aaj » Wed, 2016-02-24 04:48 |
2 |
2,701 |
by aaj Wed, 2016-02-24 07:37 |
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Strong bias in sampling observed in RosettaDock by chenna » Thu, 2020-08-27 22:23 |
2 |
1,901 |
by chenna Tue, 2021-10-12 20:51 |
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select_best_unique_ligand_poses output by ast » Thu, 2013-07-11 02:33 |
2 |
3,367 |
by ast Mon, 2014-04-21 06:48 |
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Number of Monte Carlo Cycles for FARFAR2 by mandar » Tue, 2024-03-12 19:11 |
2 |
206 |
by mandar Tue, 2024-03-12 23:07 |
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GrowLigand by allan.ferrari » Sat, 2019-10-19 05:32 |
2 |
2,100 |
by allan.ferrari Tue, 2019-11-05 16:52 |
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Multistate design issues with -run:msd_job_dist option and MSDMover by elaine.thai » Wed, 2020-05-13 18:07 |
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3,134 |
by Jane_002 Thu, 2023-08-03 19:47 |
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RoseTTaFold by ozsolomon » Thu, 2021-10-07 05:27 |
2 |
2,379 |
by ozsolomon Thu, 2021-10-07 14:25 |
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Regarding the efficiency of the new low resolution ligand-docking movement “Transform”. by Martin Floor » Mon, 2017-05-15 09:19 |
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2,690 |
by Martin Floor Mon, 2017-05-15 11:13 |
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The question about ligand score function by asbelx » Sun, 2018-06-17 02:07 |
2 |
3,322 |
by asbelx Mon, 2018-06-18 22:34 |
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Number of max allowed mutations from WT sequence by mouung » Fri, 2020-09-04 02:33 |
2 |
1,885 |
by amorin Fri, 2021-02-12 08:53 |
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Syntax for python-based (.py) command line on cluster by lanselibai » Fri, 2014-11-14 09:32 |
2 |
5,199 |
by lanselibai Thu, 2014-11-20 02:15 |
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Error from clean_pdb.py by code_Monkey » Mon, 2021-03-01 17:00 |
2 |
1,453 |
by code_Monkey Thu, 2021-03-04 12:14 |
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RMS determination using Rosetta 3.3 by adraney » Thu, 2011-12-08 12:44 |
2 |
3,377 |
by mark.wilson Mon, 2014-04-21 06:47 |
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refining crystal structure using phenix without CIF file by banshee » Fri, 2016-09-09 01:14 |
2 |
3,282 |
by banshee Mon, 2016-09-12 23:41 |
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Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
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3,260 |
by chelsell Wed, 2014-10-08 12:25 |
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The usage of antibody_H3.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 22:50 |
2 |
2,027 |
by Sunyp_IM Thu, 2020-06-04 08:20 |
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getting a3m files by alonwenger » Wed, 2021-12-15 02:38 |
2 |
2,805 |
by alonwenger Sat, 2021-12-18 12:32 |
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Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
2 |
2,786 |
by felipet Thu, 2014-07-17 10:13 |
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Total score problems with high-res ddg_monomer by jklesmith » Tue, 2015-03-10 15:54 |
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3,658 |
by jennifer Fri, 2015-03-27 05:56 |
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kinematic loop modeling multiple input: possible? by a_s_a » Thu, 2011-05-12 09:33 |
2 |
3,384 |
by a_s_a Mon, 2014-04-21 06:47 |
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KeyError: 'subject-id' in antibody modelling by bogac » Mon, 2017-03-06 02:00 |
2 |
3,167 |
by bogac Tue, 2017-03-07 02:11 |
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How to eliminate "NUL"s when scoring PDBs? by lanselibai » Tue, 2014-10-14 10:04 |
2 |
3,068 |
by lanselibai Fri, 2014-10-17 03:36 |
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How to scan double mutations in RosettaScripts? by msardejani » Mon, 2016-12-12 16:52 |
2 |
2,544 |
by msardejani Mon, 2016-12-12 17:48 |
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CC (or similar) calculation for cryoEM fitting by almeida85 » Tue, 2023-05-16 01:32 |
2 |
728 |
by almeida85 Tue, 2023-05-23 08:23 |
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membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
2 |
4,308 |
by ytao Mon, 2014-04-21 06:47 |
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FlexPepDock Concatenation by cam11 » Mon, 2014-08-11 07:39 |
2 |
2,888 |
by cam11 Wed, 2014-08-13 10:06 |
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score_jd2.mpi.linuxgccrelease failed by fred » Wed, 2014-03-26 13:54 |
2 |
5,498 |
by fred Tue, 2014-04-01 08:24 |
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Homology Modeling-no PDB output by jlawrie » Wed, 2020-08-12 06:30 |
2 |
1,896 |
by jlawrie Wed, 2020-08-12 08:56 |
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GeneralizedKIC loop closure error by chenna » Sat, 2021-04-10 00:21 |
2 |
1,579 |
by chenna Mon, 2021-04-12 22:08 |
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Trouble running MPI docking protocol, please help! by Rob_Barringer » Tue, 2020-08-18 06:40 |
2 |
2,907 |
by Rob_Barringer Fri, 2020-09-25 05:45 |
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Generalized KIC loop closure affects downstream residues without perturbations by chenna » Mon, 2021-04-26 02:16 |
2 |
1,477 |
by chenna Wed, 2021-04-28 07:18 |
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Score - Strange message by Ashafix » Wed, 2013-11-20 15:23 |
2 |
3,589 |
by Ashafix Mon, 2014-04-21 06:48 |
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Fold and Dock - chains not in contact by arthuc01 » Wed, 2012-06-13 01:45 |
2 |
3,091 |
by smlewis Mon, 2014-04-21 06:47 |
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ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
2 |
3,373 |
by ahonegger Fri, 2014-06-06 09:31 |
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cartesian_ddg error: "Assertion `files.size() == 1` failed." by cossio » Fri, 2018-05-11 09:59 |
2 |
3,353 |
by cossio Fri, 2018-05-18 09:51 |
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Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
2 |
2,004 |
by orionshih Wed, 2019-06-26 03:54 |
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make_fragments.pl error by almeida85 » Mon, 2020-08-31 04:39 |
2 |
2,030 |
by almeida85 Tue, 2020-09-01 01:29 |
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Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu by lanselibai » Mon, 2014-11-10 08:12 |
2 |
2,972 |
by lanselibai Tue, 2014-11-11 04:42 |
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Fnat and Irms are nan in score.sc from docking_protocol? by cossio » Sun, 2015-09-13 07:34 |
2 |
3,780 |
by rmoretti Thu, 2015-09-17 12:47 |
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ValueError("Path %s does not exist!" % path_name) for rna_helix.py by kameisel » Wed, 2023-08-16 00:39 |
2 |
578 |
by kameisel Wed, 2023-09-13 02:16 |
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where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
2 |
3,141 |
by lchen Mon, 2014-04-21 06:47 |
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Collecting all decoys from batch files by aep » Sun, 2016-08-07 12:23 |
2 |
2,561 |
by aep Sat, 2016-08-13 13:03 |
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Ligand params file proton_chi parameters by staciekim » Thu, 2017-08-17 14:50 |
2 |
3,108 |
by staciekim Thu, 2017-08-17 17:06 |
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RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
2 |
2,728 |
by esozdemir Thu, 2019-06-13 12:19 |
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How to add additional rounds of design and optimization in Rosetta scripts? by Nicole Deng » Tue, 2020-11-03 19:05 |
2 |
1,581 |
by Nicole Deng Thu, 2020-11-05 03:04 |
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"Make_fragments.pl" can't connect to dependencies links by Corvin » Wed, 2019-09-04 23:54 |
2 |
2,280 |
by Corvin Thu, 2019-10-10 01:12 |
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symmetric fixbb design with design_hpatch by sdh_h » Sat, 2013-02-02 01:48 |
2 |
2,960 |
by ronj Mon, 2014-04-21 06:47 |
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RosettaRemodel by gw » Wed, 2011-09-14 13:24 |
2 |
3,687 |
by smlewis Mon, 2014-04-21 06:47 |
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cross correlation calculation by jingwei xu » Sat, 2016-04-16 19:11 |
2 |
2,795 |
by jingwei xu Wed, 2016-05-04 23:26 |
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Segmentation Fault in Fragment picking by ashu4487 » Fri, 2018-07-06 20:47 |
2 |
3,308 |
by ashu4487 Mon, 2018-07-16 19:24 |
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De novo structure building with medium resolution map by BuddySphinx » Tue, 2019-07-02 09:07 |
2 |
2,098 |
by BuddySphinx Tue, 2019-07-02 12:03 |
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