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Rosetta 3 - Applications
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
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3,031 |
by rmoretti Tue, 2016-07-12 09:41 |
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ERROR: no fragment to compute secondary structure by byin » Sun, 2011-08-07 23:55 |
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3,752 |
by smlewis Mon, 2014-04-21 06:47 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
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2,874 |
by lanselibai Tue, 2015-01-13 14:25 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
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2,047 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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Abrelax - Dunbrack02.lib.bin missing by omirus » Sun, 2011-09-18 06:30 |
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4,117 |
by smlewis Mon, 2014-04-21 06:47 |
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make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
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4,295 |
by smlewis Mon, 2014-04-21 06:47 |
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What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"? by lanselibai » Fri, 2014-10-17 06:06 |
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20,232 |
by rmoretti Fri, 2014-10-17 10:17 |
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RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
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2,219 |
by smlewis Mon, 2017-01-23 06:26 |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
3,194 |
by xun Mon, 2014-04-21 06:47 |
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Why is proline hydroxylated？ by kwonglynn » Tue, 2013-06-25 02:38 |
3 |
4,432 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
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3,967 |
by rmoretti Wed, 2014-07-02 16:55 |
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Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
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928 |
by vizcarra Thu, 2021-08-26 10:16 |
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dihedral_between_bonded_children: atoms are not both my children! by pdbb » Fri, 2013-04-05 06:40 |
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2,646 |
by smlewis Mon, 2014-04-21 06:47 |
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Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
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4,135 |
by rmoretti Mon, 2014-04-21 06:47 |
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Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
3 |
2,087 |
by rmoretti Tue, 2017-08-22 09:03 |
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relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
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1,338 |
by smlewis Thu, 2020-05-21 21:05 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
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2,153 |
by rmoretti Mon, 2018-11-12 14:35 |
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RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
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992 |
by everyday847 Wed, 2020-12-09 21:46 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
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3,213 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error when running cluster by aloshbau » Wed, 2013-05-01 20:45 |
3 |
3,803 |
by rmoretti Mon, 2014-04-21 06:47 |
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cluster.mpi.linuxgccrelease failed by fred » Mon, 2014-02-24 12:11 |
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7,157 |
by fred Thu, 2014-03-27 11:29 |
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Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
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2,442 |
by sn Mon, 2017-03-06 10:03 |
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clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
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1,383 |
by rmoretti Tue, 2020-07-28 08:24 |
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Homology Modelling with cofactors by Derek Smith » Thu, 2015-07-09 08:24 |
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3,620 |
by Derek Smith Wed, 2016-02-03 05:47 |
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how to make "static" built binaries use multiple cpus like "mpi"? by Danielsebas » Wed, 2019-09-18 06:41 |
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1,633 |
by rmoretti Wed, 2019-09-18 10:21 |
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analysis of clustering by loris.moretti » Thu, 2012-04-19 02:52 |
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6,102 |
by rmoretti Mon, 2014-04-21 06:47 |
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HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
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3,413 |
by protos_heis Tue, 2014-08-05 12:47 |
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Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
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3,103 |
by dswhit Tue, 2015-04-21 10:14 |
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deltaG calculations by Prasanth Kumar » Wed, 2013-05-15 07:06 |
3 |
5,340 |
by rmoretti Mon, 2014-04-21 06:47 |
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Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM by ajkal » Fri, 2017-04-14 08:44 |
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2,677 |
by rmoretti Thu, 2017-04-20 13:59 |
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Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
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2,372 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
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RosettaScript Segmentation Fault (crash log attached) by chrisHKL » Thu, 2020-03-05 07:21 |
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1,352 |
by chrisHKL Thu, 2020-03-05 09:11 |
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Disulfide Bonds in Loop Modeling by code_Monkey » Mon, 2021-05-03 08:27 |
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694 |
by code_Monkey Thu, 2021-05-06 07:14 |
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prepack_example.sh error message by sacch » Sun, 2011-10-23 23:22 |
2 |
2,680 |
by sacch Mon, 2014-04-21 06:47 |
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Reproducing the exact result using information from previos run by nawsad » Thu, 2013-03-14 12:05 |
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2,066 |
by nawsad Mon, 2014-04-21 06:47 |
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FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
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2,650 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
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1,130 |
by bjharris Thu, 2020-07-02 11:09 |
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How do I change the default Compiler for Rosetta？ by pagumaaaaa » Wed, 2022-03-16 00:23 |
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250 |
by pagumaaaaa Thu, 2022-03-24 22:40 |
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Fold and Dock - chains not in contact by arthuc01 » Wed, 2012-06-13 01:45 |
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2,507 |
by smlewis Mon, 2014-04-21 06:47 |
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Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
2 |
2,139 |
by kalabharath Wed, 2015-04-29 16:21 |
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Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
2 |
1,027 |
by tuleshwori Thu, 2020-05-21 02:08 |
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example scripts for comparative modeling by fglaser » Sun, 2011-02-27 21:50 |
2 |
2,994 |
by maxebert Mon, 2014-04-21 06:47 |
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-loops:fa_input not found in command line top-level context by swarekwood » Thu, 2017-08-24 03:15 |
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1,898 |
by swarekwood Fri, 2017-08-25 05:08 |
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ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
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1,128 |
by Ruska322 Fri, 2019-09-06 07:13 |
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ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
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994 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
2 |
3,149 |
by Pernille Thu, 2014-07-03 07:21 |
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Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
2 |
2,322 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
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where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
2 |
2,544 |
by lchen Mon, 2014-04-21 06:47 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
2 |
2,382 |
by Pernille Wed, 2014-10-08 10:41 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
2 |
2,450 |
by mintseris Wed, 2015-06-24 22:04 |
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How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
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513 |
by dnamkr Fri, 2022-04-22 17:00 |
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high-res docking by tfliu » Mon, 2013-07-15 02:49 |
2 |
2,716 |
by tfliu Mon, 2014-04-21 06:48 |
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error extracting PDB from silent from AbinitioRelax with constraints by attesor » Wed, 2017-06-14 04:15 |
2 |
1,715 |
by smlewis Fri, 2017-06-16 07:35 |
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
2 |
2,502 |
by attesor Tue, 2015-11-17 07:36 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
2 |
2,187 |
by David Weis Mon, 2017-03-13 06:40 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
2 |
1,186 |
by Martin Floor Tue, 2020-01-21 11:15 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
2 |
2,176 |
by rmoretti Fri, 2015-01-02 09:43 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
2 |
1,009 |
by jlawrie Wed, 2020-08-12 08:57 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
2 |
3,222 |
by eskici Mon, 2014-04-21 06:47 |
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How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
2 |
2,817 |
by ahonegger Mon, 2014-05-12 09:08 |
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AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
2 |
1,177 |
by vmulligan Thu, 2019-06-13 14:59 |
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InterfaceAnalyzer dSasa calculation by mintseris » Wed, 2015-09-02 09:43 |
2 |
3,589 |
by jadolfbr Thu, 2015-09-03 16:18 |
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How to correctly incorporate constraint information into ab initio structure prediction? by johnnytam100 » Tue, 2019-02-19 03:13 |
2 |
1,539 |
by johnnytam100 Fri, 2019-03-01 01:36 |
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How to add constrains to FlexPepDocking? by MajorID » Thu, 2011-06-02 11:00 |
2 |
2,631 |
by MajorID Mon, 2014-04-21 06:47 |
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not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
2 |
1,013 |
by xinmiaohe Mon, 2020-10-19 13:18 |
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Problems with fixbb in Rosetta 3.5 by mdidonato » Wed, 2014-06-04 13:56 |
2 |
2,095 |
by mdidonato Wed, 2014-06-04 14:55 |
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Scoring docking error by almeida85 » Wed, 2020-09-02 01:32 |
2 |
986 |
by almeida85 Wed, 2020-09-02 06:14 |
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Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
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2,807 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
2 |
3,114 |
by jrcf Mon, 2015-09-21 11:10 |
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Ligand atom RMSD calculation by lkrathn » Wed, 2013-08-14 21:25 |
2 |
4,050 |
by lkrathn Mon, 2014-04-21 06:48 |
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Warnings during relax by cossio » Thu, 2018-10-11 14:42 |
2 |
2,082 |
by rmoretti Mon, 2019-11-04 13:56 |
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Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1 by cm21 » Wed, 2020-05-20 08:55 |
2 |
1,044 |
by cm21 Wed, 2020-05-20 11:22 |
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The energy terms in InterfaceAnalyzer by Sunyp_IM » Tue, 2021-11-02 18:43 |
2 |
415 |
by zivben Sat, 2021-11-13 04:49 |
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Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
2 |
3,264 |
by mumdonar Mon, 2014-04-21 06:48 |
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where is generate_ligens.linuxgccrelease? by Nicole Deng » Thu, 2020-12-03 00:00 |
2 |
895 |
by Nicole Deng Fri, 2020-12-18 00:28 |
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printing our per-residue energies including H-bonding energies by vijayan » Tue, 2013-07-02 08:51 |
2 |
3,186 |
by rmoretti Mon, 2014-04-21 06:48 |
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Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
2 |
2,501 |
by brspurri Thu, 2017-06-01 10:58 |
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flexpepdock flag "-packing:unboundrot" by gw » Mon, 2011-07-11 12:23 |
2 |
3,310 |
by Ora Schueler-Furman Mon, 2014-04-21 06:47 |
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protein-ligand docking rescoring with interfaceAnalyzer by syntekabio2019 » Sat, 2020-12-19 03:59 |
2 |
794 |
by syntekabio2019 Sun, 2020-12-20 21:10 |
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D-amino acids tripeptide docking. by sam_dc » Sat, 2021-07-03 08:48 |
2 |
623 |
by vmulligan Tue, 2021-07-06 08:27 |
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RMS determination using Rosetta 3.3 by adraney » Thu, 2011-12-08 12:44 |
2 |
2,702 |
by mark.wilson Mon, 2014-04-21 06:47 |
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Modeling flexible linkers with Floppytail by pdbb » Sun, 2013-05-12 15:55 |
2 |
2,704 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking seems to not parse the -nstruct flag by rosend » Tue, 2015-11-17 12:01 |
2 |
3,055 |
by rosend Tue, 2015-11-17 12:12 |
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DDG_monomer application by shadrinams » Mon, 2018-02-12 12:14 |
2 |
2,221 |
by shadrinams Wed, 2018-03-14 07:46 |
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Error when trying docking protocol with different ligand by scyphs » Wed, 2020-08-05 04:37 |
2 |
892 |
by scyphs Mon, 2020-08-10 08:09 |
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Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations by yliang20 » Wed, 2022-06-15 11:26 |
2 |
57 |
by yliang20 Wed, 2022-06-15 13:46 |
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Element 'trRosettaProtocol': This element is not expected. by csaylan » Tue, 2021-04-20 14:21 |
2 |
667 |
by csaylan Tue, 2021-04-20 16:13 |
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homology modeling with threading says length mismatch between sequence and alignment by rqliang » Thu, 2015-08-06 11:46 |
2 |
2,315 |
by jharamesh Sat, 2015-08-08 19:51 |
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The Usage of motifgraft by Sunyp_IM » Sun, 2017-11-19 20:22 |
2 |
2,412 |
by Sunyp_IM Mon, 2017-11-20 19:20 |
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Chemically bound ligand connection error by tsztain » Tue, 2019-01-01 18:40 |
2 |
1,523 |
by tsztain Mon, 2019-02-18 09:55 |
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Speed problem when running RosettaLigand ligand docking by Nicole Deng » Tue, 2019-10-08 04:29 |
2 |
1,483 |
by Nicole Deng Tue, 2020-11-03 19:07 |
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kinematic loop modeling multiple input: possible? by a_s_a » Thu, 2011-05-12 09:33 |
2 |
2,718 |
by a_s_a Mon, 2014-04-21 06:47 |
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A question on the logic of enzyme design by agulsevin » Thu, 2013-06-13 08:10 |
2 |
3,357 |
by agulsevin Mon, 2014-04-21 06:48 |
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Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
2 |
3,395 |
by RMJ Mon, 2014-04-21 06:47 |
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Packstat score in InterfaceAnalyzer by Vedasheersh » Fri, 2017-01-27 06:21 |
2 |
2,048 |
by smlewis Fri, 2017-01-27 07:20 |
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Alanine Scanning for 1 Protein (no interface) by mags33 » Fri, 2019-10-25 10:08 |
2 |
1,551 |
by mags33 Wed, 2019-11-06 09:35 |
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How to sort a Silent File based on RMSD by JadAbbass » Sun, 2013-08-04 14:40 |
2 |
2,869 |
by lanselibai Mon, 2014-10-06 15:30 |
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flexpepdock_score_only by ays » Sun, 2014-09-21 06:17 |
2 |
2,041 |
by ays Tue, 2014-09-30 08:31 |
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SPLINE EPR_DISTANCE Constraint Error by mmw88 » Tue, 2018-09-18 14:39 |
2 |
1,711 |
by rmoretti Thu, 2018-09-20 09:19 |
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RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow? by brspurri » Thu, 2020-05-14 11:15 |
2 |
970 |
by brspurri Thu, 2020-05-14 12:24 |
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