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Rosetta 3 - Applications
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RosettaDock 4.0 ambiguous ERROR by sam_dc » Fri, 2022-03-18 09:36 |
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1,795 |
by rmoretti Tue, 2022-03-22 09:10 |
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analysis of clustering by loris.moretti » Thu, 2012-04-19 02:52 |
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6,912 |
by rmoretti Mon, 2014-04-21 06:47 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
3 |
1,935 |
by ctqwong Mon, 2020-07-27 01:48 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
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3,573 |
by brspurri Sat, 2017-08-26 07:08 |
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What is a rational minimal value for the "-nstruct" option by Sunyp_IM » Fri, 2020-05-22 01:28 |
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2,009 |
by nannemdp Sun, 2020-05-24 14:46 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
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3,753 |
by rmoretti Tue, 2016-07-12 09:41 |
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issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
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2,449 |
by He Xiao Sun, 2021-04-11 19:29 |
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What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"? by lanselibai » Fri, 2014-10-17 06:06 |
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20,907 |
by rmoretti Fri, 2014-10-17 10:17 |
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FlexPepDocking with GDP-bound protein by LI » Sun, 2011-06-12 20:02 |
3 |
4,607 |
by rmoretti Mon, 2014-04-21 06:47 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
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3,513 |
by lanselibai Tue, 2015-01-13 14:25 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
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2,933 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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parameterizing new residues by chiendarret » Fri, 2012-02-03 22:59 |
3 |
7,499 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
3 |
2,896 |
by smlewis Mon, 2017-01-23 06:26 |
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Why is proline hydroxylated？ by kwonglynn » Tue, 2013-06-25 02:38 |
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5,071 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
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4,892 |
by rmoretti Wed, 2014-07-02 16:55 |
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Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
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1,776 |
by vizcarra Thu, 2021-08-26 10:16 |
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dihedral_between_bonded_children: atoms are not both my children! by pdbb » Fri, 2013-04-05 06:40 |
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3,207 |
by smlewis Mon, 2014-04-21 06:47 |
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Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
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4,865 |
by rmoretti Mon, 2014-04-21 06:47 |
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Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
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2,812 |
by rmoretti Tue, 2017-08-22 09:03 |
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relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
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2,112 |
by smlewis Thu, 2020-05-21 21:05 |
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relax with resfile by gw » Fri, 2011-08-05 10:57 |
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5,982 |
by nannemdp Mon, 2014-04-21 06:47 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
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3,761 |
by rmoretti Mon, 2014-04-21 06:48 |
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Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
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3,978 |
by smlewis Mon, 2014-04-21 06:47 |
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Error when running cluster by aloshbau » Wed, 2013-05-01 20:45 |
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4,489 |
by rmoretti Mon, 2014-04-21 06:47 |
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cluster.mpi.linuxgccrelease failed by fred » Mon, 2014-02-24 12:11 |
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7,899 |
by fred Thu, 2014-03-27 11:29 |
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Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
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3,237 |
by sn Mon, 2017-03-06 10:03 |
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clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
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2,302 |
by rmoretti Tue, 2020-07-28 08:24 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
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2,853 |
by rmoretti Mon, 2018-11-12 14:35 |
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RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
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1,715 |
by everyday847 Wed, 2020-12-09 21:46 |
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how to make "static" built binaries use multiple cpus like "mpi"? by Danielsebas » Wed, 2019-09-18 06:41 |
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2,438 |
by rmoretti Wed, 2019-09-18 10:21 |
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HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
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4,078 |
by protos_heis Tue, 2014-08-05 12:47 |
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Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
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3,763 |
by dswhit Tue, 2015-04-21 10:14 |
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deltaG calculations by Prasanth Kumar » Wed, 2013-05-15 07:06 |
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6,216 |
by rmoretti Mon, 2014-04-21 06:47 |
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Different scoring applications (score vs score_aln vs score_jd2, etc.)? by cossio » Fri, 2014-12-26 07:19 |
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4,456 |
by Patrícia Antunes Fri, 2023-01-20 11:55 |
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Homology Modelling with cofactors by Derek Smith » Thu, 2015-07-09 08:24 |
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4,335 |
by Derek Smith Wed, 2016-02-03 05:47 |
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FlexPepDock for protein containing multiple chains by Dimitrov » Mon, 2012-10-08 08:31 |
3 |
3,868 |
by smlewis Mon, 2014-04-21 06:47 |
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Unable to locate the "compute_ddg.py" file and running the RosettaMP protocol by Sajjad » Mon, 2022-11-28 14:09 |
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4,634 |
by Sajjad Wed, 2022-11-30 11:50 |
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Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM by ajkal » Fri, 2017-04-14 08:44 |
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3,398 |
by rmoretti Thu, 2017-04-20 13:59 |
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ab initio by malkeet.singh » Thu, 2018-05-10 05:34 |
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3,202 |
by malkeet.singh Mon, 2018-05-21 04:26 |
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Up to date Vall database by JadAbbass » Sat, 2013-06-29 10:35 |
3 |
5,647 |
by rmoretti Tue, 2017-06-20 09:02 |
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error with fragment_picker.linuxgccrelease by jiongzhang » Tue, 2012-04-17 09:07 |
3 |
3,430 |
by smlewis Mon, 2014-04-21 06:47 |
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The error of InterfaceAnalyzer by asbelx » Thu, 2017-12-21 19:04 |
3 |
3,792 |
by smlewis Sat, 2017-12-23 15:56 |
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comparative modeling of protein-ligand complex by tevang » Mon, 2013-09-09 09:06 |
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4,231 |
by rmoretti Mon, 2014-04-21 06:48 |
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folding ectodomain in membrane ab initio by freedman » Mon, 2015-05-25 21:09 |
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3,769 |
by rmoretti Fri, 2015-06-19 13:53 |
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How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
2 |
1,834 |
by dnamkr Fri, 2022-04-22 17:00 |
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high-res docking by tfliu » Mon, 2013-07-15 02:49 |
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3,219 |
by tfliu Mon, 2014-04-21 06:48 |
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error extracting PDB from silent from AbinitioRelax with constraints by attesor » Wed, 2017-06-14 04:15 |
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2,245 |
by smlewis Fri, 2017-06-16 07:35 |
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kinematic loop modeling multiple input: possible? by a_s_a » Thu, 2011-05-12 09:33 |
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3,246 |
by a_s_a Mon, 2014-04-21 06:47 |
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
2 |
3,096 |
by attesor Tue, 2015-11-17 07:36 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
2 |
2,774 |
by David Weis Mon, 2017-03-13 06:40 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
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1,860 |
by Martin Floor Tue, 2020-01-21 11:15 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
2 |
2,921 |
by Pernille Wed, 2014-10-08 10:41 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
2 |
3,004 |
by mintseris Wed, 2015-06-24 22:04 |
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Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
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3,888 |
by RMJ Mon, 2014-04-21 06:47 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
2 |
2,733 |
by rmoretti Fri, 2015-01-02 09:43 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
2 |
1,618 |
by jlawrie Wed, 2020-08-12 08:57 |
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Generate fragment locally by deltag » Wed, 2012-02-01 06:26 |
2 |
3,367 |
by deltag Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer dSasa calculation by mintseris » Wed, 2015-09-02 09:43 |
2 |
4,322 |
by jadolfbr Thu, 2015-09-03 16:18 |
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How to correctly incorporate constraint information into ab initio structure prediction? by johnnytam100 » Tue, 2019-02-19 03:13 |
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2,119 |
by johnnytam100 Fri, 2019-03-01 01:36 |
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not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
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1,818 |
by xinmiaohe Mon, 2020-10-19 13:18 |
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How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
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3,359 |
by ahonegger Mon, 2014-05-12 09:08 |
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AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
2 |
1,711 |
by vmulligan Thu, 2019-06-13 14:59 |
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Problems with fixbb in Rosetta 3.5 by mdidonato » Wed, 2014-06-04 13:56 |
2 |
2,590 |
by mdidonato Wed, 2014-06-04 14:55 |
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Scoring docking error by almeida85 » Wed, 2020-09-02 01:32 |
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1,527 |
by almeida85 Wed, 2020-09-02 06:14 |
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Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
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3,377 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
2 |
3,945 |
by jrcf Mon, 2015-09-21 11:10 |
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Dock cyclic peptide with non-canonical amino acids to protein target using rosetta flexpepdock? by lei » Mon, 2023-09-11 23:34 |
2 |
282 |
by lei Wed, 2023-09-13 19:35 |
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Ligand atom RMSD calculation by lkrathn » Wed, 2013-08-14 21:25 |
2 |
4,555 |
by lkrathn Mon, 2014-04-21 06:48 |
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does the loop kinetic support MPI now? by albumns » Fri, 2012-10-26 06:31 |
2 |
2,447 |
by smlewis Mon, 2014-04-21 06:47 |
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Warnings during relax by cossio » Thu, 2018-10-11 14:42 |
2 |
3,127 |
by rmoretti Mon, 2019-11-04 13:56 |
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Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1 by cm21 » Wed, 2020-05-20 08:55 |
2 |
1,644 |
by cm21 Wed, 2020-05-20 11:22 |
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The energy terms in InterfaceAnalyzer by Sunyp_IM » Tue, 2021-11-02 18:43 |
2 |
1,300 |
by zivben Sat, 2021-11-13 04:49 |
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RosettaRemodel by gw » Wed, 2011-09-14 13:24 |
2 |
3,517 |
by smlewis Mon, 2014-04-21 06:47 |
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printing our per-residue energies including H-bonding energies by vijayan » Tue, 2013-07-02 08:51 |
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3,640 |
by rmoretti Mon, 2014-04-21 06:48 |
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Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
2 |
3,263 |
by brspurri Thu, 2017-06-01 10:58 |
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Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
2 |
3,751 |
by mumdonar Mon, 2014-04-21 06:48 |
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where is generate_ligens.linuxgccrelease? by Nicole Deng » Thu, 2020-12-03 00:00 |
2 |
1,568 |
by Nicole Deng Fri, 2020-12-18 00:28 |
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protein-ligand docking rescoring with interfaceAnalyzer by syntekabio2019 » Sat, 2020-12-19 03:59 |
2 |
1,315 |
by syntekabio2019 Sun, 2020-12-20 21:10 |
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D-amino acids tripeptide docking. by sam_dc » Sat, 2021-07-03 08:48 |
2 |
1,338 |
by vmulligan Tue, 2021-07-06 08:27 |
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Modeling flexible linkers with Floppytail by pdbb » Sun, 2013-05-12 15:55 |
2 |
3,163 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking seems to not parse the -nstruct flag by rosend » Tue, 2015-11-17 12:01 |
2 |
3,637 |
by rosend Tue, 2015-11-17 12:12 |
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DDG_monomer application by shadrinams » Mon, 2018-02-12 12:14 |
2 |
3,088 |
by shadrinams Wed, 2018-03-14 07:46 |
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Error when trying docking protocol with different ligand by scyphs » Wed, 2020-08-05 04:37 |
2 |
1,439 |
by scyphs Mon, 2020-08-10 08:09 |
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Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations by yliang20 » Wed, 2022-06-15 11:26 |
2 |
1,277 |
by yliang20 Wed, 2022-06-15 13:46 |
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homology modeling with threading says length mismatch between sequence and alignment by rqliang » Thu, 2015-08-06 11:46 |
2 |
2,789 |
by jharamesh Sat, 2015-08-08 19:51 |
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The Usage of motifgraft by Sunyp_IM » Sun, 2017-11-19 20:22 |
2 |
3,247 |
by Sunyp_IM Mon, 2017-11-20 19:20 |
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Chemically bound ligand connection error by tsztain » Tue, 2019-01-01 18:40 |
2 |
2,168 |
by tsztain Mon, 2019-02-18 09:55 |
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Speed problem when running RosettaLigand ligand docking by Nicole Deng » Tue, 2019-10-08 04:29 |
2 |
2,082 |
by Nicole Deng Tue, 2020-11-03 19:07 |
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homology modeling- Error: length mismatch between sequence and alignment. by pdbb » Mon, 2012-10-01 07:57 |
2 |
4,328 |
by pdbb Mon, 2014-04-21 06:47 |
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DDG monomer and backrub motions by yperez » Thu, 2012-06-21 08:10 |
2 |
3,248 |
by yperez Mon, 2014-04-21 06:47 |
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Element 'trRosettaProtocol': This element is not expected. by csaylan » Tue, 2021-04-20 14:21 |
2 |
1,329 |
by csaylan Tue, 2021-04-20 16:13 |
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Packstat score in InterfaceAnalyzer by Vedasheersh » Fri, 2017-01-27 06:21 |
2 |
2,835 |
by smlewis Fri, 2017-01-27 07:20 |
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Alanine Scanning for 1 Protein (no interface) by mags33 » Fri, 2019-10-25 10:08 |
2 |
2,232 |
by mags33 Wed, 2019-11-06 09:35 |
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Rosetta Design: Non-canonical amino acid substrate not accepted by Friedrich Ehinger » Fri, 2023-08-04 00:09 |
2 |
329 |
by Friedrich Ehinger Fri, 2023-08-04 08:38 |
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How to sort a Silent File based on RMSD by JadAbbass » Sun, 2013-08-04 14:40 |
2 |
3,444 |
by lanselibai Mon, 2014-10-06 15:30 |
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flexpepdock_score_only by ays » Sun, 2014-09-21 06:17 |
2 |
2,568 |
by ays Tue, 2014-09-30 08:31 |
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SPLINE EPR_DISTANCE Constraint Error by mmw88 » Tue, 2018-09-18 14:39 |
2 |
2,306 |
by rmoretti Thu, 2018-09-20 09:19 |
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RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow? by brspurri » Thu, 2020-05-14 11:15 |
2 |
1,533 |
by brspurri Thu, 2020-05-14 12:24 |
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A question on the logic of enzyme design by agulsevin » Thu, 2013-06-13 08:10 |
2 |
3,917 |
by agulsevin Mon, 2014-04-21 06:48 |
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CSrosetta run problem by erin_cutts » Fri, 2013-06-28 09:52 |
2 |
3,596 |
by erin_cutts Mon, 2014-04-21 06:48 |
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