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Rosetta 3 - Applications

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Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
2,229 by rmoretti
Wed, 2018-03-07 08:44
Normal topic problem with fixed_membrane option of membrane abinitio
by yescalona » Thu, 2013-01-17 15:42
3
2,880 by smlewis
Mon, 2014-04-21 06:47
Normal topic Model truncated proteins
by BuddySphinx » Wed, 2018-12-12 10:32
3
1,782 by smlewis
Wed, 2018-12-12 16:51
Normal topic Residue_energy_breakdown utility
by cn » Sat, 2012-03-17 06:11
3
2,891 by cn
Mon, 2014-04-21 06:47
Normal topic ligand_docking_error
by Alison_Yajie » Mon, 2020-04-20 12:27
3
1,405 by YuFei
Sat, 2020-05-30 00:12
Normal topic Problems with always_constrained_relax_script
by wsgosal » Wed, 2013-05-29 04:39
3
4,036 by rmoretti
Mon, 2014-04-21 06:47
Normal topic High energies after loopmodel run
by michki » Thu, 2014-05-08 05:14
3
3,198 by rmoretti
Mon, 2014-05-12 15:16
Normal topic xyzVector error in Enzyme design
by ajmbarbosa » Tue, 2016-01-05 09:46
3
3,360 by rmoretti
Fri, 2016-06-17 10:36
Normal topic Running RosettaHoles2
by weehee » Wed, 2013-02-13 09:35
3
2,940 by weehee
Mon, 2014-04-21 06:47
Normal topic Per residue scoring
by chelsell » Mon, 2015-08-17 14:43
3
3,374 by rmoretti
Wed, 2015-09-02 12:33
Normal topic RosettaCM input file for running on Stampede
by smathersc » Wed, 2017-01-18 16:12
3
2,416 by rmoretti
Thu, 2017-02-02 09:02
Normal topic Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB
by rlwoltz » Thu, 2019-01-24 19:43
3
2,741 by bjharris
Sun, 2020-08-23 14:03
Normal topic DockingProtocol
by Soler » Fri, 2022-02-11 00:12
3
435 by gezmi
Tue, 2022-02-15 21:47
Normal topic Using Rosetta Docking for nucleic acids
by Adrien Guilhot » Thu, 2011-04-28 06:16
3
4,234 by Adrien Guilhot
Mon, 2014-04-21 06:47
Normal topic revert_design_to_native app comparison to FavorNativeResidue mover
by nwhoppe » Wed, 2016-06-29 14:35
3
3,305 by rmoretti
Tue, 2016-07-12 09:30
Normal topic Docking membrane ions and water
by jrcf » Tue, 2017-02-07 15:47
3
2,396 by smlewis
Wed, 2017-02-15 07:43
Normal topic RosettaDock 4.0 ambiguous ERROR
by sam_dc » Fri, 2022-03-18 09:36
3
302 by rmoretti
Tue, 2022-03-22 09:10
Normal topic Relax is resulting in a Segmentation Fault
by brspurri » Thu, 2017-08-24 18:46
3
2,692 by brspurri
Sat, 2017-08-26 07:08
Normal topic What is a rational minimal value for the "-nstruct" option
by Sunyp_IM » Fri, 2020-05-22 01:28
3
1,300 by nannemdp
Sun, 2020-05-24 14:46
Normal topic ddg_monomer.mpi
by gw » Thu, 2011-10-27 16:45
3
3,334 by smlewis
Mon, 2014-04-21 06:47
Normal topic Comparative modeling of metalloproteins
by ctqwong » Sun, 2020-07-12 13:51
3
1,254 by ctqwong
Mon, 2020-07-27 01:48
Normal topic issues about cstfile in RosettaMatch
by Nicole Deng » Fri, 2020-12-18 05:44
3
1,310 by He Xiao
Sun, 2021-04-11 19:29
Normal topic Loop design with length variation
by jarod » Thu, 2016-06-16 19:54
3
3,031 by rmoretti
Tue, 2016-07-12 09:41
Normal topic Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease?
by lanselibai » Thu, 2015-01-08 03:23
3
2,874 by lanselibai
Tue, 2015-01-13 14:25
Normal topic Behavior of nstruct
by johnnytam100 » Wed, 2019-05-15 22:22
3
2,047 by johnnytam100
Tue, 2019-05-21 20:48
Normal topic partial ab initio modeling
by fred » Wed, 2011-08-17 14:14
3
3,424 by smlewis
Mon, 2014-04-21 06:47
Normal topic What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"?
by lanselibai » Fri, 2014-10-17 06:06
3
20,232 by rmoretti
Fri, 2014-10-17 10:17
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
2,218 by smlewis
Mon, 2017-01-23 06:26
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
2,086 by rmoretti
Tue, 2017-08-22 09:03
Normal topic relax and movemap
by Alison_Yajie » Wed, 2020-05-20 21:27
3
1,338 by smlewis
Thu, 2020-05-21 21:05
Normal topic Why is proline hydroxylated?
by kwonglynn » Tue, 2013-06-25 02:38
3
4,432 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ddG_monomer
by cott1117 » Thu, 2014-06-12 09:53
3
3,963 by rmoretti
Wed, 2014-07-02 16:55
Normal topic Rosetta Ligand Ensemble
by malfonsoprieto » Wed, 2021-05-26 10:21
3
928 by vizcarra
Thu, 2021-08-26 10:16
Normal topic dihedral_between_bonded_children: atoms are not both my children!
by pdbb » Fri, 2013-04-05 06:40
3
2,646 by smlewis
Mon, 2014-04-21 06:47
Normal topic Homodimer interface design
by petrikigor » Fri, 2012-11-16 10:57
3
4,134 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
2,153 by rmoretti
Mon, 2018-11-12 14:35
Normal topic RNA modeling with step wise Monte Carlo error
by szcshr123 » Mon, 2020-12-07 18:08
3
991 by everyday847
Wed, 2020-12-09 21:46
Normal topic pdb2vall
by JadAbbass » Mon, 2013-07-08 12:11
3
3,213 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error when running cluster
by aloshbau » Wed, 2013-05-01 20:45
3
3,803 by rmoretti
Mon, 2014-04-21 06:47
Normal topic cluster.mpi.linuxgccrelease failed
by fred » Mon, 2014-02-24 12:11
3
7,156 by fred
Thu, 2014-03-27 11:29
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
2,442 by sn
Mon, 2017-03-06 10:03
Normal topic clean_pdb not working
by Andre Serobian » Thu, 2020-07-23 04:48
3
1,383 by rmoretti
Tue, 2020-07-28 08:24
Normal topic deltaG calculations
by Prasanth Kumar » Wed, 2013-05-15 07:06
3
5,338 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Homology Modelling with cofactors
by Derek Smith » Thu, 2015-07-09 08:24
3
3,618 by Derek Smith
Wed, 2016-02-03 05:47
Normal topic how to make "static" built binaries use multiple cpus like "mpi"?
by Danielsebas » Wed, 2019-09-18 06:41
3
1,633 by rmoretti
Wed, 2019-09-18 10:21
Normal topic HBNet and RosettaScripts
by protos_heis » Tue, 2014-08-05 06:05
3
3,411 by protos_heis
Tue, 2014-08-05 12:47
Normal topic Can't append or prepend with pepspec
by danzinho » Tue, 2015-03-31 01:19
3
3,101 by dswhit
Tue, 2015-04-21 10:14
Normal topic Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM
by ajkal » Fri, 2017-04-14 08:44
3
2,674 by rmoretti
Thu, 2017-04-20 13:59
Normal topic Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains
by ahonegger » Tue, 2012-04-24 01:34
3
3,480 by ahonegger
Mon, 2014-04-21 06:47
Normal topic ab initio
by malkeet.singh » Thu, 2018-05-10 05:34
3
2,476 by malkeet.singh
Mon, 2018-05-21 04:26
Normal topic Docking to TM protein plus lipid bilayer
by renedominik » Tue, 2019-03-12 06:58
3
2,125 by renedominik
Tue, 2020-02-18 01:36
Normal topic Ligand dock analysis
by sacch » Tue, 2012-05-22 01:20
3
3,195 by glemmon
Mon, 2014-04-21 06:47
Normal topic comparative modeling of protein-ligand complex
by tevang » Mon, 2013-09-09 09:06
3
3,600 by rmoretti
Mon, 2014-04-21 06:48
Normal topic folding ectodomain in membrane ab initio
by freedman » Mon, 2015-05-25 21:09
3
3,101 by rmoretti
Fri, 2015-06-19 13:53
Normal topic Up to date Vall database
by JadAbbass » Sat, 2013-06-29 10:35
3
4,761 by rmoretti
Tue, 2017-06-20 09:02
Normal topic  The error of InterfaceAnalyzer
by asbelx » Thu, 2017-12-21 19:04
3
2,880 by smlewis
Sat, 2017-12-23 15:56
Normal topic score to use for picking top docking solutions?
by sudhar » Tue, 2011-06-14 06:47
3
4,824 by weitzner
Mon, 2014-04-21 06:47
Normal topic How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI
by kingljy » Sun, 2017-09-24 18:37
3
2,615 by rmoretti
Tue, 2017-10-10 09:58
Normal topic "Install_dependencies.pl" gives "Aborted" when downloading "nr" database?
by Danielsebas » Sat, 2019-09-14 08:53
3
1,365 by danpf
Mon, 2019-09-16 09:51
Normal topic RosettaAntibody
by mpendleton » Mon, 2011-04-04 10:27
3
4,175 by jianqing
Mon, 2014-04-21 06:47
Normal topic Lammps or RosettaSurface
by StevPChem » Fri, 2016-06-10 10:13
3
3,081 by Anpu
Tue, 2018-09-25 18:53
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
3
2,608 by rmoretti
Fri, 2018-11-23 11:23
Normal topic ERROR: no fragment to compute secondary structure
by byin » Sun, 2011-08-07 23:55
3
3,752 by smlewis
Mon, 2014-04-21 06:47
Normal topic Syntax for the alignment file in "minirosetta comparative modeling"
by lanselibai » Thu, 2014-10-16 15:29
3
3,737 by lanselibai
Thu, 2014-10-23 03:26
Normal topic Constraints in RosettaCM
by kbuhr » Fri, 2015-07-31 06:55
3
3,345 by kbuhr
Mon, 2016-03-28 01:08
Normal topic Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex
by benhardy » Mon, 2020-06-15 09:33
3
1,231 by benhardy
Fri, 2020-06-19 07:55
Normal topic Does it make sense if I do backrub after sequence design?
by johnnytam100 » Thu, 2019-08-15 05:15
3
1,494 by johnnytam100
Fri, 2019-08-16 00:20
Normal topic RosettaCM or FastRelax?
by Tianyang89 » Wed, 2020-09-23 07:46
3
1,183 by danpf
Thu, 2020-09-24 13:44
Normal topic Missing CS-HM-Rosetta Binary files
by Marius1987 » Wed, 2016-02-10 05:52
3
3,137 by Marius1987
Mon, 2016-03-14 04:34
Normal topic Threading a sequence onto a template with ligands/metal ions included
by ajkal » Wed, 2017-04-19 11:53
3
2,682 by ahmadkhalifa
Sun, 2019-03-31 23:27
Normal topic Abrelax - Dunbrack02.lib.bin missing
by omirus » Sun, 2011-09-18 06:30
3
4,115 by smlewis
Mon, 2014-04-21 06:47
Normal topic make fragment
by zadie1118 » Thu, 2012-08-30 07:45
3
4,295 by smlewis
Mon, 2014-04-21 06:47
Normal topic scoring input pdbs as the same as docking score
by hamedkhakzad » Fri, 2016-07-01 07:15
3
2,840 by rmoretti
Tue, 2016-07-12 09:05
Normal topic KIC with fragments versus Next generation KIC
by Loki01 » Fri, 2018-09-07 05:06
3
2,118 by smlewis
Mon, 2018-09-10 11:48
Normal topic Transmembrane helix fold-and-dock?
by sarah_b » Tue, 2020-05-12 02:09
3
1,407 by jkleman
Tue, 2020-05-19 15:02
Normal topic Rosetta make_fragments.pl error?
by Danielsebas » Mon, 2019-09-02 07:51
3
1,544 by Danielsebas
Thu, 2019-09-05 03:35
Normal topic proline patching problem
by xun » Tue, 2012-01-03 11:15
3
3,194 by xun
Mon, 2014-04-21 06:47
Normal topic De novo model-building guided by exprimental density data
by dee2711453 » Thu, 2016-03-10 17:28
3
2,752 by dee2711453
Fri, 2016-03-11 21:32
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
2,307 by rmoretti
Thu, 2018-06-28 12:58
Normal topic what does initialize_rigid_body_dofs do?
by attesor » Mon, 2015-10-26 05:12
3
3,150 by rmoretti
Tue, 2015-11-10 11:35
Normal topic assymetric dymer modelling with comparative and ab initio
by marcia » Mon, 2013-10-14 08:33
3
4,088 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Enzdes constraint file not defined correctly
by eyong123 » Fri, 2015-03-27 07:16
3
3,011 by rmoretti
Thu, 2015-04-16 10:38
Normal topic clustering in RosettaRemodel
by cheyuk » Wed, 2014-04-23 03:09
3
3,292 by rmoretti
Mon, 2014-05-12 08:45
Normal topic analysis of clustering
by loris.moretti » Thu, 2012-04-19 02:52
3
6,102 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
2,389 by rmoretti
Thu, 2017-08-24 11:00
Normal topic parameterizing new residues
by chiendarret » Fri, 2012-02-03 22:59
3
6,477 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file?
by lanselibai » Sun, 2014-11-16 10:26
3
2,979 by G Mustafa
Thu, 2018-10-18 05:31
Normal topic How tu use Delta filter's relax_mover
by pocin » Sun, 2017-02-19 05:21
3
2,412 by rmoretti
Wed, 2017-03-01 13:10
Normal topic FlexPepDocking with GDP-bound protein
by LI » Sun, 2011-06-12 20:02
3
3,949 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Can only relax one structure at a time
by lah435 » Wed, 2012-12-12 01:55
3
3,234 by smlewis
Mon, 2014-04-21 06:47
Normal topic NCAA attached at two points
by tsztain » Wed, 2021-06-16 15:20
3
729 by matteoferla
Sat, 2021-06-19 03:07
Normal topic ddg monomer vs pmut scan
by dave » Tue, 2014-03-04 10:18
3
3,628 by smlewis
Fri, 2014-03-07 13:02
Normal topic Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB"
by brspurri » Fri, 2017-03-24 10:52
3
2,849 by brspurri
Fri, 2017-03-24 11:35
Normal topic protein protein interaction design
by Negarsardar » Wed, 2019-05-15 06:13
3
2,246 by ajasja
Wed, 2019-05-15 15:40
Normal topic relax with resfile
by gw » Fri, 2011-08-05 10:57
3
5,117 by nannemdp
Mon, 2014-04-21 06:47
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
3
3,495 by matteoferla
Tue, 2018-10-30 02:54
Normal topic No Space
by jrcf » Mon, 2016-01-11 16:18
3
2,675 by jrcf
Fri, 2016-02-12 16:42
Normal topic Problem with symmetric docking
by saxen » Fri, 2011-04-29 15:15
3
3,333 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to preserve ACE/NME termini?
by nitroamos » Tue, 2018-05-22 13:07
3
2,592 by rmoretti
Thu, 2018-06-28 12:44
Normal topic loopmodel thinks there are no residues in the pose
by lah435 » Wed, 2013-03-27 02:46
3
3,555 by rmoretti
Mon, 2014-04-21 06:47
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