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Rosetta 3 - Applications

Topic / Topic starter Repliessort descending Views Last post
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
2,345 by David Weis
Mon, 2017-03-13 06:40
Normal topic Centroid mode minimization
by Martin Floor » Tue, 2020-01-21 07:34
2
1,383 by Martin Floor
Tue, 2020-01-21 11:15
Normal topic residues_patch_selectors CENTROID_HA
by Pernille » Fri, 2014-10-03 03:53
2
2,552 by Pernille
Wed, 2014-10-08 10:41
Normal topic docking with constraints and flexible bb
by mintseris » Mon, 2015-06-22 09:07
2
2,638 by mintseris
Wed, 2015-06-24 22:04
Normal topic Reproducing the exact result using information from previos run
by nawsad » Thu, 2013-03-14 12:05
2
2,197 by nawsad
Mon, 2014-04-21 06:47
Normal topic FlexPepDock and total score problem
by tkellici » Fri, 2014-01-17 06:07
2
2,824 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic cluster.mpi running in MPI mode?
by sacch » Fri, 2011-11-18 23:30
2
3,910 by sacch
Mon, 2014-04-21 06:47
Normal topic How to Perform point mutations with NCAA
by Subhrodeep Saha » Tue, 2021-06-22 02:05
2
842 by dnamkr
Fri, 2022-04-22 17:00
Normal topic error extracting PDB from silent from AbinitioRelax with constraints
by attesor » Wed, 2017-06-14 04:15
2
1,876 by smlewis
Fri, 2017-06-16 07:35
Normal topic Floppytail modelling
by felipet » Fri, 2011-06-24 09:23
2
3,261 by felipet
Mon, 2014-04-21 06:47
Normal topic Docking with constraint
by Hongtham » Sat, 2014-12-27 09:56
2
2,332 by rmoretti
Fri, 2015-01-02 09:43
Normal topic Docking-I_sc values do not correlate
by jlawrie » Wed, 2020-08-12 08:08
2
1,203 by jlawrie
Wed, 2020-08-12 08:57
Normal topic Fastrelax problem
by Pernille » Fri, 2014-06-20 00:16
2
3,330 by Pernille
Thu, 2014-07-03 07:21
Normal topic Problems running pmut in parallel with openmpi
by RMJ » Fri, 2012-09-21 06:25
2
3,541 by RMJ
Mon, 2014-04-21 06:47
Normal topic Generate fragment locally
by deltag » Wed, 2012-02-01 06:26
2
3,061 by deltag
Mon, 2014-04-21 06:47
Normal topic Abrelax - Dunbrack02.lib.bin missing
by omirus » Sun, 2011-09-18 06:30
3
4,326 by smlewis
Mon, 2014-04-21 06:47
Normal topic Missing CS-HM-Rosetta Binary files
by Marius1987 » Wed, 2016-02-10 05:52
3
3,334 by Marius1987
Mon, 2016-03-14 04:34
Normal topic Threading a sequence onto a template with ligands/metal ions included
by ajkal » Wed, 2017-04-19 11:53
3
2,903 by ahmadkhalifa
Sun, 2019-03-31 23:27
Normal topic scoring input pdbs as the same as docking score
by hamedkhakzad » Fri, 2016-07-01 07:15
3
3,049 by rmoretti
Tue, 2016-07-12 09:05
Normal topic KIC with fragments versus Next generation KIC
by Loki01 » Fri, 2018-09-07 05:06
3
2,336 by smlewis
Mon, 2018-09-10 11:48
Normal topic Transmembrane helix fold-and-dock?
by sarah_b » Tue, 2020-05-12 02:09
3
1,635 by jkleman
Tue, 2020-05-19 15:02
Normal topic Rosetta make_fragments.pl error?
by Danielsebas » Mon, 2019-09-02 07:51
3
1,754 by Danielsebas
Thu, 2019-09-05 03:35
Normal topic Residue_energy_breakdown utility
by cn » Sat, 2012-03-17 06:11
3
3,065 by cn
Mon, 2014-04-21 06:47
Normal topic De novo model-building guided by exprimental density data
by dee2711453 » Thu, 2016-03-10 17:28
3
2,960 by dee2711453
Fri, 2016-03-11 21:32
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
2,515 by rmoretti
Thu, 2018-06-28 12:58
Normal topic what does initialize_rigid_body_dofs do?
by attesor » Mon, 2015-10-26 05:12
3
3,348 by rmoretti
Tue, 2015-11-10 11:35
Normal topic Enzdes constraint file not defined correctly
by eyong123 » Fri, 2015-03-27 07:16
3
3,213 by rmoretti
Thu, 2015-04-16 10:38
Normal topic assymetric dymer modelling with comparative and ab initio
by marcia » Mon, 2013-10-14 08:33
3
4,295 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
2,612 by rmoretti
Thu, 2017-08-24 11:00
Normal topic FlexPepDocking with GDP-bound protein
by LI » Sun, 2011-06-12 20:02
3
4,155 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file?
by lanselibai » Sun, 2014-11-16 10:26
3
3,195 by G Mustafa
Thu, 2018-10-18 05:31
Normal topic How tu use Delta filter's relax_mover
by pocin » Sun, 2017-02-19 05:21
3
2,630 by rmoretti
Wed, 2017-03-01 13:10
Normal topic clustering in RosettaRemodel
by cheyuk » Wed, 2014-04-23 03:09
3
3,479 by rmoretti
Mon, 2014-05-12 08:45
Normal topic NCAA attached at two points
by tsztain » Wed, 2021-06-16 15:20
3
1,041 by matteoferla
Sat, 2021-06-19 03:07
Normal topic Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB"
by brspurri » Fri, 2017-03-24 10:52
3
3,055 by brspurri
Fri, 2017-03-24 11:35
Normal topic protein protein interaction design
by Negarsardar » Wed, 2019-05-15 06:13
3
2,554 by ajasja
Wed, 2019-05-15 15:40
Normal topic relax with resfile
by gw » Fri, 2011-08-05 10:57
3
5,373 by nannemdp
Mon, 2014-04-21 06:47
Normal topic No Space
by jrcf » Mon, 2016-01-11 16:18
3
2,871 by jrcf
Fri, 2016-02-12 16:42
Normal topic Problem with symmetric docking
by saxen » Fri, 2011-04-29 15:15
3
3,531 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg monomer vs pmut scan
by dave » Tue, 2014-03-04 10:18
3
3,832 by smlewis
Fri, 2014-03-07 13:02
Normal topic Can only relax one structure at a time
by lah435 » Wed, 2012-12-12 01:55
3
3,410 by smlewis
Mon, 2014-04-21 06:47
Normal topic Negative Design
by rbjacob » Thu, 2018-10-11 09:18
3
2,197 by smlewis
Mon, 2018-10-15 08:42
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
3
3,719 by matteoferla
Tue, 2018-10-30 02:54
Normal topic How to preserve ACE/NME termini?
by nitroamos » Tue, 2018-05-22 13:07
3
2,886 by rmoretti
Thu, 2018-06-28 12:44
Normal topic Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains
by ahonegger » Tue, 2012-04-24 01:34
3
3,668 by ahonegger
Mon, 2014-04-21 06:47
Normal topic ddg_monomer: what is the theoretical solution condition for the scoring?
by lanselibai » Sat, 2016-04-30 03:26
3
3,221 by smlewis
Mon, 2016-05-02 08:20
Normal topic Error encountered during Rosetta loop modeling
by max » Tue, 2014-11-25 02:17
3
3,181 by max
Thu, 2014-11-27 02:56
Normal topic Loop modeling with constraints
by agctomer » Sat, 2021-03-20 03:53
3
1,226 by agctomer
Thu, 2021-04-08 07:37
Normal topic relax a protein with phosphorylated serine residue
by zruan » Thu, 2018-02-01 09:18
3
2,332 by rmoretti
Tue, 2018-02-06 09:47
Normal topic loopmodel thinks there are no residues in the pose
by lah435 » Wed, 2013-03-27 02:46
3
3,720 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Ligand dock analysis
by sacch » Tue, 2012-05-22 01:20
3
3,375 by glemmon
Mon, 2014-04-21 06:47
Normal topic Discrepancy between the total pose energy and sum of per residue energies
by vijayan » Tue, 2013-07-02 07:24
3
3,930 by rmoretti
Mon, 2014-04-21 06:48
Normal topic New CSRosetta toolbox
by sn » Mon, 2017-04-24 12:42
3
2,231 by rmoretti
Tue, 2017-04-25 06:41
Normal topic How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior )
by asbelx » Sat, 2019-06-08 00:07
3
1,892 by happycaapi
Tue, 2021-06-29 15:35
Normal topic Loop prediction
by yzhou » Thu, 2013-07-18 14:24
3
3,762 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Relax both peptide and ligands
by matteoferla » Thu, 2018-09-13 03:11
3
2,006 by smlewis
Fri, 2018-09-14 10:34
Normal topic Missing common atom definitions in constraints
by ic3reyes » Sat, 2011-06-11 13:09
3
4,517 by smlewis
Mon, 2014-04-21 06:47
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Thu, 2011-02-17 12:29
3
4,187 by fukamitka
Mon, 2014-04-21 06:47
Normal topic strange effect in: SymDock.linuxgccrelease
by ast » Tue, 2013-06-11 11:05
3
3,308 by ast
Mon, 2014-04-21 06:48
Normal topic make fragment
by zadie1118 » Thu, 2012-08-30 07:45
3
4,513 by smlewis
Mon, 2014-04-21 06:47
Normal topic auto_setup_metals flag with loop modeling application fails
by beowulfey » Wed, 2015-06-10 07:44
3
3,539 by beowulfey
Tue, 2015-06-23 16:10
Normal topic RosettaScripts filter BuriedUnsatHbonds2 missing still
by zdaw » Fri, 2020-12-11 12:39
3
1,196 by zdaw
Tue, 2020-12-15 15:38
Normal topic fragment_picker with fasta only
by gw » Tue, 2011-11-15 13:20
3
3,800 by gw
Mon, 2014-04-21 06:47
Normal topic Modeling of side-chains onto membrane ab initio cluster?
by akfried » Thu, 2011-06-23 04:03
3
3,473 by nkemjika
Mon, 2014-04-21 06:47
Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
2,467 by rmoretti
Wed, 2018-03-07 08:44
Normal topic using Rosetta to compute pH dependent binding?
by JuliusSu » Sun, 2014-06-15 20:28
3
4,370 by rmoretti
Tue, 2014-06-17 08:51
Normal topic Model truncated proteins
by BuddySphinx » Wed, 2018-12-12 10:32
3
2,006 by smlewis
Wed, 2018-12-12 16:51
Normal topic ligand_docking_error
by Alison_Yajie » Mon, 2020-04-20 12:27
3
1,620 by YuFei
Sat, 2020-05-30 00:12
Normal topic proline patching problem
by xun » Tue, 2012-01-03 11:15
3
3,396 by xun
Mon, 2014-04-21 06:47
Normal topic xyzVector error in Enzyme design
by ajmbarbosa » Tue, 2016-01-05 09:46
3
3,601 by rmoretti
Fri, 2016-06-17 10:36
Normal topic Using Rosetta Docking for nucleic acids
by Adrien Guilhot » Thu, 2011-04-28 06:16
3
4,480 by Adrien Guilhot
Mon, 2014-04-21 06:47
Normal topic Per residue scoring
by chelsell » Mon, 2015-08-17 14:43
3
3,586 by rmoretti
Wed, 2015-09-02 12:33
Normal topic RosettaCM input file for running on Stampede
by smathersc » Wed, 2017-01-18 16:12
3
2,605 by rmoretti
Thu, 2017-02-02 09:02
Normal topic Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB
by rlwoltz » Thu, 2019-01-24 19:43
3
3,063 by bjharris
Sun, 2020-08-23 14:03
Normal topic DockingProtocol
by Soler » Fri, 2022-02-11 00:12
3
808 by gezmi
Tue, 2022-02-15 21:47
Normal topic InterfaceAnalyzer problem
by almeida » Mon, 2014-03-03 14:56
3
4,247 by smlewis
Fri, 2014-03-07 14:09
Normal topic revert_design_to_native app comparison to FavorNativeResidue mover
by nwhoppe » Wed, 2016-06-29 14:35
3
3,517 by rmoretti
Tue, 2016-07-12 09:30
Normal topic problem with fixed_membrane option of membrane abinitio
by yescalona » Thu, 2013-01-17 15:42
3
3,050 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking membrane ions and water
by jrcf » Tue, 2017-02-07 15:47
3
2,629 by smlewis
Wed, 2017-02-15 07:43
Normal topic RosettaDock 4.0 ambiguous ERROR
by sam_dc » Fri, 2022-03-18 09:36
3
722 by rmoretti
Tue, 2022-03-22 09:10
Normal topic Relax is resulting in a Segmentation Fault
by brspurri » Thu, 2017-08-24 18:46
3
2,963 by brspurri
Sat, 2017-08-26 07:08
Normal topic What is a rational minimal value for the "-nstruct" option
by Sunyp_IM » Fri, 2020-05-22 01:28
3
1,502 by nannemdp
Sun, 2020-05-24 14:46
Normal topic Running RosettaHoles2
by weehee » Wed, 2013-02-13 09:35
3
3,128 by weehee
Mon, 2014-04-21 06:47
Normal topic analysis of clustering
by loris.moretti » Thu, 2012-04-19 02:52
3
6,343 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddg_monomer.mpi
by gw » Thu, 2011-10-27 16:45
3
3,552 by smlewis
Mon, 2014-04-21 06:47
Normal topic Comparative modeling of metalloproteins
by ctqwong » Sun, 2020-07-12 13:51
3
1,462 by ctqwong
Mon, 2020-07-27 01:48
Normal topic Problems with always_constrained_relax_script
by wsgosal » Wed, 2013-05-29 04:39
3
4,211 by rmoretti
Mon, 2014-04-21 06:47
Normal topic High energies after loopmodel run
by michki » Thu, 2014-05-08 05:14
3
3,392 by rmoretti
Mon, 2014-05-12 15:16
Normal topic issues about cstfile in RosettaMatch
by Nicole Deng » Fri, 2020-12-18 05:44
3
1,599 by He Xiao
Sun, 2021-04-11 19:29
Normal topic Loop design with length variation
by jarod » Thu, 2016-06-16 19:54
3
3,234 by rmoretti
Tue, 2016-07-12 09:41
Normal topic Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease?
by lanselibai » Thu, 2015-01-08 03:23
3
3,071 by lanselibai
Tue, 2015-01-13 14:25
Normal topic Behavior of nstruct
by johnnytam100 » Wed, 2019-05-15 22:22
3
2,318 by johnnytam100
Tue, 2019-05-21 20:48
Normal topic What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"?
by lanselibai » Fri, 2014-10-17 06:06
3
20,447 by rmoretti
Fri, 2014-10-17 10:17
Normal topic parameterizing new residues
by chiendarret » Fri, 2012-02-03 22:59
3
6,785 by rmoretti
Mon, 2014-04-21 06:47
Normal topic partial ab initio modeling
by fred » Wed, 2011-08-17 14:14
3
3,622 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
2,411 by smlewis
Mon, 2017-01-23 06:26
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
2,322 by rmoretti
Tue, 2017-08-22 09:03
Normal topic relax and movemap
by Alison_Yajie » Wed, 2020-05-20 21:27
3
1,577 by smlewis
Thu, 2020-05-21 21:05
Normal topic Rosetta Ligand Ensemble
by malfonsoprieto » Wed, 2021-05-26 10:21
3
1,272 by vizcarra
Thu, 2021-08-26 10:16
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
2,350 by rmoretti
Mon, 2018-11-12 14:35
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