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Rosetta 3 - Applications
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Views | Last post | |
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partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
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3,209 |
by smlewis Mon, 2014-04-21 06:47 |
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parameterizing new residues by chiendarret » Fri, 2012-02-03 22:59 |
3 |
6,214 |
by rmoretti Mon, 2014-04-21 06:47 |
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auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
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3,103 |
by beowulfey Tue, 2015-06-23 16:10 |
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RosettaScripts filter BuriedUnsatHbonds2 missing still by zdaw » Fri, 2020-12-11 12:39 |
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780 |
by zdaw Tue, 2020-12-15 15:38 |
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remodel gives no output by coomteng@gmail.com » Tue, 2018-03-06 07:40 |
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1,972 |
by rmoretti Wed, 2018-03-07 08:44 |
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assymetric dymer modelling with comparative and ab initio by marcia » Mon, 2013-10-14 08:33 |
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3,893 |
by rmoretti Mon, 2014-04-21 06:48 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
3 |
1,580 |
by smlewis Wed, 2018-12-12 16:51 |
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ligand_docking_error by Alison_Yajie » Mon, 2020-04-20 12:27 |
3 |
1,194 |
by YuFei Sat, 2020-05-30 00:12 |
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revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
3 |
3,092 |
by rmoretti Tue, 2016-07-12 09:30 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
3 |
3,105 |
by rmoretti Mon, 2014-05-12 08:45 |
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xyzVector error in Enzyme design by ajmbarbosa » Tue, 2016-01-05 09:46 |
3 |
3,131 |
by rmoretti Fri, 2016-06-17 10:36 |
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Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
3 |
3,135 |
by rmoretti Wed, 2015-09-02 12:33 |
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RosettaCM input file for running on Stampede by smathersc » Wed, 2017-01-18 16:12 |
3 |
2,237 |
by rmoretti Thu, 2017-02-02 09:02 |
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Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB by rlwoltz » Thu, 2019-01-24 19:43 |
3 |
2,405 |
by bjharris Sun, 2020-08-23 14:03 |
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FlexPepDock for protein containing multiple chains by Dimitrov » Mon, 2012-10-08 08:31 |
3 |
3,049 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking membrane ions and water by jrcf » Tue, 2017-02-07 15:47 |
3 |
2,182 |
by smlewis Wed, 2017-02-15 07:43 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
3 |
1,047 |
by ctqwong Mon, 2020-07-27 01:48 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
3 |
2,431 |
by brspurri Sat, 2017-08-26 07:08 |
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What is a rational minimal value for the "-nstruct" option by Sunyp_IM » Fri, 2020-05-22 01:28 |
3 |
1,075 |
by nannemdp Sun, 2020-05-24 14:46 |
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ddg monomer vs pmut scan by dave » Tue, 2014-03-04 10:18 |
3 |
3,411 |
by smlewis Fri, 2014-03-07 13:02 |
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error with fragment_picker.linuxgccrelease by jiongzhang » Tue, 2012-04-17 09:07 |
3 |
2,668 |
by smlewis Mon, 2014-04-21 06:47 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
3 |
3,048 |
by smlewis Mon, 2014-04-21 06:47 |
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issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
3 |
974 |
by He Xiao Sun, 2021-04-11 19:29 |
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score to use for picking top docking solutions? by sudhar » Tue, 2011-06-14 06:47 |
3 |
4,530 |
by weitzner Mon, 2014-04-21 06:47 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
3 |
2,846 |
by rmoretti Tue, 2016-07-12 09:41 |
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RosettaAntibody by mpendleton » Mon, 2011-04-04 10:27 |
3 |
3,981 |
by jianqing Mon, 2014-04-21 06:47 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
3 |
2,694 |
by lanselibai Tue, 2015-01-13 14:25 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
3 |
1,775 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"? by lanselibai » Fri, 2014-10-17 06:06 |
3 |
20,045 |
by rmoretti Fri, 2014-10-17 10:17 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
3 |
3,300 |
by matteoferla Tue, 2018-10-30 02:54 |
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RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
3 |
2,055 |
by smlewis Mon, 2017-01-23 06:26 |
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ERROR: no fragment to compute secondary structure by byin » Sun, 2011-08-07 23:55 |
3 |
3,549 |
by smlewis Mon, 2014-04-21 06:47 |
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Abrelax - Dunbrack02.lib.bin missing by omirus » Sun, 2011-09-18 06:30 |
3 |
3,935 |
by smlewis Mon, 2014-04-21 06:47 |
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Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
3 |
1,864 |
by rmoretti Tue, 2017-08-22 09:03 |
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relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
3 |
1,128 |
by smlewis Thu, 2020-05-21 21:05 |
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Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
3 |
608 |
by vizcarra Thu, 2021-08-26 10:16 |
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loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
3 |
3,355 |
by rmoretti Mon, 2014-04-21 06:47 |
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Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
3 |
2,185 |
by sn Mon, 2017-03-06 10:03 |
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clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
3 |
1,136 |
by rmoretti Tue, 2020-07-28 08:24 |
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Residue_energy_breakdown utility by cn » Sat, 2012-03-17 06:11 |
3 |
2,740 |
by cn Mon, 2014-04-21 06:47 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
3 |
1,952 |
by rmoretti Mon, 2018-11-12 14:35 |
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RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
3 |
787 |
by everyday847 Wed, 2020-12-09 21:46 |
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Discrepancy between the total pose energy and sum of per residue energies by vijayan » Tue, 2013-07-02 07:24 |
3 |
3,552 |
by rmoretti Mon, 2014-04-21 06:48 |
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Homology Modelling with cofactors by Derek Smith » Thu, 2015-07-09 08:24 |
3 |
3,370 |
by Derek Smith Wed, 2016-02-03 05:47 |
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how to make "static" built binaries use multiple cpus like "mpi"? by Danielsebas » Wed, 2019-09-18 06:41 |
3 |
1,393 |
by rmoretti Wed, 2019-09-18 10:21 |
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Loop prediction by yzhou » Thu, 2013-07-18 14:24 |
3 |
3,385 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
3 |
2,900 |
by dswhit Tue, 2015-04-21 10:14 |
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Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM by ajkal » Fri, 2017-04-14 08:44 |
3 |
2,451 |
by rmoretti Thu, 2017-04-20 13:59 |
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strange effect in: SymDock.linuxgccrelease by ast » Tue, 2013-06-11 11:05 |
3 |
2,970 |
by ast Mon, 2014-04-21 06:48 |
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ab initio by malkeet.singh » Thu, 2018-05-10 05:34 |
3 |
2,288 |
by malkeet.singh Mon, 2018-05-21 04:26 |
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Docking to TM protein plus lipid bilayer by renedominik » Tue, 2019-03-12 06:58 |
3 |
1,858 |
by renedominik Tue, 2020-02-18 01:36 |
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The error of InterfaceAnalyzer by asbelx » Thu, 2017-12-21 19:04 |
3 |
2,586 |
by smlewis Sat, 2017-12-23 15:56 |
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folding ectodomain in membrane ab initio by freedman » Mon, 2015-05-25 21:09 |
3 |
2,918 |
by rmoretti Fri, 2015-06-19 13:53 |
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using Rosetta to compute pH dependent binding? by JuliusSu » Sun, 2014-06-15 20:28 |
3 |
3,579 |
by rmoretti Tue, 2014-06-17 08:51 |
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InterfaceAnalyzer problem by almeida » Mon, 2014-03-03 14:56 |
3 |
3,784 |
by smlewis Fri, 2014-03-07 14:09 |
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Extract PDB structures from database by cossio » Mon, 2018-01-29 09:30 |
3 |
2,325 |
by rmoretti Fri, 2018-11-23 11:23 |
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How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI by kingljy » Sun, 2017-09-24 18:37 |
3 |
2,384 |
by rmoretti Tue, 2017-10-10 09:58 |
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"Install_dependencies.pl" gives "Aborted" when downloading "nr" database? by Danielsebas » Sat, 2019-09-14 08:53 |
3 |
1,155 |
by danpf Mon, 2019-09-16 09:51 |
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FlexPepDocking with GDP-bound protein by LI » Sun, 2011-06-12 20:02 |
3 |
3,756 |
by rmoretti Mon, 2014-04-21 06:47 |
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Lammps or RosettaSurface by StevPChem » Fri, 2016-06-10 10:13 |
3 |
2,889 |
by Anpu Tue, 2018-09-25 18:53 |
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problem with fixed_membrane option of membrane abinitio by yescalona » Thu, 2013-01-17 15:42 |
3 |
2,718 |
by smlewis Mon, 2014-04-21 06:47 |
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Syntax for the alignment file in "minirosetta comparative modeling" by lanselibai » Thu, 2014-10-16 15:29 |
3 |
3,548 |
by lanselibai Thu, 2014-10-23 03:26 |
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Constraints in RosettaCM by kbuhr » Fri, 2015-07-31 06:55 |
3 |
3,155 |
by kbuhr Mon, 2016-03-28 01:08 |
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Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex by benhardy » Mon, 2020-06-15 09:33 |
3 |
1,016 |
by benhardy Fri, 2020-06-19 07:55 |
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Does it make sense if I do backrub after sequence design? by johnnytam100 » Thu, 2019-08-15 05:15 |
3 |
1,289 |
by johnnytam100 Fri, 2019-08-16 00:20 |
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RosettaCM or FastRelax? by Tianyang89 » Wed, 2020-09-23 07:46 |
3 |
966 |
by danpf Thu, 2020-09-24 13:44 |
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scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
3 |
2,607 |
by rmoretti Tue, 2016-07-12 09:05 |
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KIC with fragments versus Next generation KIC by Loki01 » Fri, 2018-09-07 05:06 |
3 |
1,884 |
by smlewis Mon, 2018-09-10 11:48 |
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Transmembrane helix fold-and-dock? by sarah_b » Tue, 2020-05-12 02:09 |
3 |
1,171 |
by jkleman Tue, 2020-05-19 15:02 |
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Problems with always_constrained_relax_script by wsgosal » Wed, 2013-05-29 04:39 |
3 |
3,825 |
by rmoretti Mon, 2014-04-21 06:47 |
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High energies after loopmodel run by michki » Thu, 2014-05-08 05:14 |
3 |
3,001 |
by rmoretti Mon, 2014-05-12 15:16 |
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Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
3 |
2,941 |
by Marius1987 Mon, 2016-03-14 04:34 |
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Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
3 |
2,467 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
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Running RosettaHoles2 by weehee » Wed, 2013-02-13 09:35 |
3 |
2,735 |
by weehee Mon, 2014-04-21 06:47 |
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relax with resfile by gw » Fri, 2011-08-05 10:57 |
3 |
4,835 |
by nannemdp Mon, 2014-04-21 06:47 |
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Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
3 |
1,326 |
by Danielsebas Thu, 2019-09-05 03:35 |
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Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
3 |
3,136 |
by smlewis Mon, 2014-04-21 06:47 |
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De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
3 |
2,534 |
by dee2711453 Fri, 2016-03-11 21:32 |
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The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
3 |
2,046 |
by rmoretti Thu, 2018-06-28 12:58 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
4 |
2,483 |
by jhm13c Thu, 2017-03-02 12:01 |
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
4 |
3,756 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
4 |
4,257 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
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When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
4 |
1,169 |
by Martin Floor Tue, 2020-09-22 00:48 |
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Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
4 |
4,052 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
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Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
4 |
3,990 |
by protos_heis Mon, 2014-04-21 06:47 |
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ddg_monomer: what is the meaning of "total score" and "score"? by lanselibai » Tue, 2015-01-13 14:49 |
4 |
5,269 |
by rmoretti Thu, 2015-04-16 11:23 |
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RosettaAntibody3 is failing with "Error: no input sequences were specified!" by brspurri » Sun, 2020-08-16 16:16 |
4 |
1,258 |
by brspurri Tue, 2020-08-18 09:57 |
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side chain repacking error by malkeet.singh » Thu, 2017-12-07 04:49 |
4 |
2,517 |
by smlewis Wed, 2017-12-13 09:54 |
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Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
4 |
2,056 |
by johnnytam100 Sun, 2019-03-03 23:42 |
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Rosetta antibody- modeling in the presense of an antigen by agctomer » Mon, 2021-02-01 03:19 |
4 |
800 |
by nannemdp Wed, 2021-02-03 08:52 |
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ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used? by lanselibai » Tue, 2015-02-24 02:38 |
4 |
4,845 |
by lanselibai Sun, 2015-03-01 15:00 |
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How to run simulations with non-canonical amino acids? by Denise » Thu, 2017-06-08 07:50 |
4 |
2,742 |
by Denise Thu, 2017-06-15 04:26 |
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How to output all iteration structures from ddg_monomer? by cossio » Fri, 2014-12-26 13:40 |
4 |
3,609 |
by cossio Mon, 2015-01-19 07:10 |
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null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
4 |
3,085 |
by fred Mon, 2014-04-21 06:47 |
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RosettaCM: An internal error has occurred when "Running the Hybridize mover" by haom » Mon, 2020-06-15 05:56 |
4 |
1,100 |
by haom Tue, 2020-06-16 05:55 |
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Structure prediction using true distance and angle constraint by maruhuang » Wed, 2019-08-21 02:29 |
4 |
1,340 |
by maruhuang Thu, 2019-09-26 18:52 |
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Filter for fixed-bb design using RosettaScript? by chrisHKL » Fri, 2020-02-28 19:47 |
4 |
1,236 |
by vmulligan Mon, 2020-03-02 13:40 |
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Can I assume the outputs from different runs are from a same batch? by lanselibai » Mon, 2014-11-03 06:34 |
4 |
3,400 |
by lanselibai Mon, 2014-11-03 13:15 |
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antibody.linuxgccrelease- output models don't have the same sequence as the input fasta by agctomer » Thu, 2021-01-21 15:35 |
4 |
864 |
by agctomer Sun, 2021-01-31 01:06 |
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fixbb and ncaa's by jarek » Thu, 2012-11-08 04:55 |
4 |
3,581 |
by jcminerlanl Thu, 2017-12-21 10:13 |
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