You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
Ways to improve AbRelax performance? by Corvin » Tue, 2022-04-19 06:10 |
2 |
2,936 |
by Corvin Thu, 2022-04-21 00:50 |
|
|
clustering by ays » Tue, 2014-09-30 08:26 |
2 |
3,373 |
by rmoretti Mon, 2014-10-06 16:00 |
|
|
How to make new VALL database? by Danielsebas » Sun, 2019-09-08 02:16 |
2 |
2,575 |
by Danielsebas Wed, 2019-09-11 00:44 |
|
|
Error in using “loopmodel” for selective rebuilding by sushreet » Mon, 2014-07-14 11:57 |
2 |
2,955 |
by sushreet Tue, 2014-08-26 13:02 |
|
|
Floppy tail: sidechain mutation during calculation by syoifczeri » Mon, 2015-03-09 19:01 |
2 |
3,180 |
by syoifczeri Tue, 2015-03-10 23:08 |
|
|
Unable to run Rosetta LoopModeling application by BDBorrillo » Tue, 2011-07-19 14:06 |
2 |
5,511 |
by BDBorrillo Mon, 2014-04-21 06:47 |
|
|
Modeling more than one protein loop at the same time by hzhekova » Mon, 2018-01-15 14:03 |
2 |
3,071 |
by hzhekova Tue, 2018-01-16 10:31 |
|
|
RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour() by sam_dc » Thu, 2021-03-25 09:32 |
2 |
2,422 |
by sam_dc Mon, 2021-04-12 07:24 |
|
|
RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
2 |
4,121 |
by jtmacd Fri, 2015-12-04 03:11 |
|
|
Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
2 |
3,101 |
by rmoretti Tue, 2017-03-28 08:51 |
|
|
Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
2 |
2,296 |
by johnnytam100 Tue, 2019-05-21 22:33 |
|
|
how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
2 |
1,600 |
by qq7678500549 Sun, 2020-08-09 18:59 |
|
|
ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42 by yliang20 » Wed, 2022-06-15 22:22 |
2 |
1,406 |
by jxw Wed, 2023-10-11 10:04 |
|
|
MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
2 |
3,685 |
by JadAbbass Mon, 2014-04-21 06:48 |
|
|
Including ab-initio predicted model in fragment library generation by ashu4487 » Thu, 2016-12-08 17:49 |
2 |
2,468 |
by ashu4487 Sun, 2016-12-11 19:03 |
|
|
rosetta_cm segfault by browns02 » Fri, 2021-07-09 13:35 |
2 |
1,430 |
by rmoretti Fri, 2021-07-09 15:05 |
|
|
Compiling Rosetta 3.3 on Linux Mint by proteinproteindock » Thu, 2011-09-01 16:05 |
2 |
3,770 |
by proteinproteindock Mon, 2014-04-21 06:47 |
|
|
Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
2 |
3,038 |
by allan.ferrari Fri, 2015-08-28 12:07 |
|
|
How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
2 |
1,771 |
by Kotimedidhi Mon, 2020-06-22 16:19 |
|
|
membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
2 |
4,307 |
by ytao Mon, 2014-04-21 06:47 |
|
|
Fragments for long sequence by exchhattu » Tue, 2011-10-04 01:51 |
2 |
3,290 |
by exchhattu Mon, 2014-04-21 06:47 |
|
|
prepack_example.sh error message by sacch » Sun, 2011-10-23 23:22 |
2 |
3,358 |
by sacch Mon, 2014-04-21 06:47 |
|
|
Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
2 |
3,071 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
|
|
RosettaScript Segmentation Fault (crash log attached) by chrisHKL » Thu, 2020-03-05 07:21 |
2 |
2,483 |
by chrisHKL Thu, 2020-03-05 09:11 |
|
|
Disulfide Bonds in Loop Modeling by code_Monkey » Mon, 2021-05-03 08:27 |
2 |
1,650 |
by code_Monkey Thu, 2021-05-06 07:14 |
|
|
Fold and Dock - chains not in contact by arthuc01 » Wed, 2012-06-13 01:45 |
2 |
3,091 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
2 |
3,312 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
|
|
OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
2 |
1,963 |
by bjharris Thu, 2020-07-02 11:09 |
|
|
How do I change the default Compiler for Rosetta？ by pagumaaaaa » Wed, 2022-03-16 00:23 |
2 |
1,580 |
by pagumaaaaa Thu, 2022-03-24 22:40 |
|
|
example scripts for comparative modeling by fglaser » Sun, 2011-02-27 21:50 |
2 |
3,669 |
by maxebert Mon, 2014-04-21 06:47 |
|
|
Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
2 |
2,800 |
by kalabharath Wed, 2015-04-29 16:21 |
|
|
Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
2 |
1,749 |
by tuleshwori Thu, 2020-05-21 02:08 |
|
|
-loops:fa_input not found in command line top-level context by swarekwood » Thu, 2017-08-24 03:15 |
2 |
2,670 |
by swarekwood Fri, 2017-08-25 05:08 |
|
|
ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
2 |
1,828 |
by Ruska322 Fri, 2019-09-06 07:13 |
|
|
ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
2 |
1,676 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
|
|
Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
2 |
3,980 |
by Pernille Thu, 2014-07-03 07:21 |
|
|
Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
2 |
3,083 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
|
|
where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
2 |
3,135 |
by lchen Mon, 2014-04-21 06:47 |
|
|
symmetric fixbb design with design_hpatch by sdh_h » Sat, 2013-02-02 01:48 |
2 |
2,958 |
by ronj Mon, 2014-04-21 06:47 |
|
|
residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
2 |
3,077 |
by Pernille Wed, 2014-10-08 10:41 |
|
|
docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
2 |
3,187 |
by mintseris Wed, 2015-06-24 22:04 |
|
|
How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
2 |
2,096 |
by dnamkr Fri, 2022-04-22 17:00 |
|
|
error extracting PDB from silent from AbinitioRelax with constraints by attesor » Wed, 2017-06-14 04:15 |
2 |
2,413 |
by smlewis Fri, 2017-06-16 07:35 |
|
|
very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
2 |
3,285 |
by attesor Tue, 2015-11-17 07:36 |
|
|
Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
2 |
3,008 |
by David Weis Mon, 2017-03-13 06:40 |
|
|
Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
2 |
2,061 |
by Martin Floor Tue, 2020-01-21 11:15 |
|
|
remove membrane for RosettaMPdock by lluoto » Wed, 2023-12-06 06:22 |
2 |
534 |
by lluoto Wed, 2024-02-21 17:39 |
|
|
Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
2 |
2,884 |
by rmoretti Fri, 2015-01-02 09:43 |
|
|
Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
2 |
1,804 |
by jlawrie Wed, 2020-08-12 08:57 |
|
|
Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
2 |
3,824 |
by eskici Mon, 2014-04-21 06:47 |
|
|
How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
2 |
3,524 |
by ahonegger Mon, 2014-05-12 09:08 |
|
|
AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
2 |
1,892 |
by vmulligan Thu, 2019-06-13 14:59 |
|
|
How to add constrains to FlexPepDocking? by MajorID » Thu, 2011-06-02 11:00 |
2 |
3,324 |
by MajorID Mon, 2014-04-21 06:47 |
|
|
InterfaceAnalyzer dSasa calculation by mintseris » Wed, 2015-09-02 09:43 |
2 |
4,555 |
by jadolfbr Thu, 2015-09-03 16:18 |
|
|
How to correctly incorporate constraint information into ab initio structure prediction? by johnnytam100 » Tue, 2019-02-19 03:13 |
2 |
2,303 |
by johnnytam100 Fri, 2019-03-01 01:36 |
|
|
not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
2 |
2,102 |
by xinmiaohe Mon, 2020-10-19 13:18 |
|
|
Problems with fixbb in Rosetta 3.5 by mdidonato » Wed, 2014-06-04 13:56 |
2 |
2,751 |
by mdidonato Wed, 2014-06-04 14:55 |
|
|
Scoring docking error by almeida85 » Wed, 2020-09-02 01:32 |
2 |
1,713 |
by almeida85 Wed, 2020-09-02 06:14 |
|
|
Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
2 |
3,537 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
|
|
Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
2 |
4,120 |
by jrcf Mon, 2015-09-21 11:10 |
|
|
Dock cyclic peptide with non-canonical amino acids to protein target using rosetta flexpepdock? by lei » Mon, 2023-09-11 23:34 |
2 |
574 |
by lei Wed, 2023-09-13 19:35 |
|
|
Ligand atom RMSD calculation by lkrathn » Wed, 2013-08-14 21:25 |
2 |
4,733 |
by lkrathn Mon, 2014-04-21 06:48 |
|
|
Warnings during relax by cossio » Thu, 2018-10-11 14:42 |
2 |
3,493 |
by rmoretti Mon, 2019-11-04 13:56 |
|
|
Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1 by cm21 » Wed, 2020-05-20 08:55 |
2 |
1,837 |
by cm21 Wed, 2020-05-20 11:22 |
|
|
The energy terms in InterfaceAnalyzer by Sunyp_IM » Tue, 2021-11-02 18:43 |
2 |
1,518 |
by zivben Sat, 2021-11-13 04:49 |
|
|
Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
2 |
3,892 |
by mumdonar Mon, 2014-04-21 06:48 |
|
|
where is generate_ligens.linuxgccrelease? by Nicole Deng » Thu, 2020-12-03 00:00 |
2 |
1,823 |
by Nicole Deng Fri, 2020-12-18 00:28 |
|
|
Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
2 |
3,472 |
by brspurri Thu, 2017-06-01 10:58 |
|
|
flexpepdock flag "-packing:unboundrot" by gw » Mon, 2011-07-11 12:23 |
2 |
4,133 |
by Ora Schueler-Furman Mon, 2014-04-21 06:47 |
|
|
DDG_monomer application by shadrinams » Mon, 2018-02-12 12:14 |
2 |
3,343 |
by shadrinams Wed, 2018-03-14 07:46 |
|
|
Error when trying docking protocol with different ligand by scyphs » Wed, 2020-08-05 04:37 |
2 |
1,621 |
by scyphs Mon, 2020-08-10 08:09 |
|
|
Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations by yliang20 » Wed, 2022-06-15 11:26 |
2 |
1,639 |
by yliang20 Wed, 2022-06-15 13:46 |
|
|
protein-ligand docking rescoring with interfaceAnalyzer by syntekabio2019 » Sat, 2020-12-19 03:59 |
2 |
1,495 |
by syntekabio2019 Sun, 2020-12-20 21:10 |
|
|
RMS determination using Rosetta 3.3 by adraney » Thu, 2011-12-08 12:44 |
2 |
3,377 |
by mark.wilson Mon, 2014-04-21 06:47 |
|
|
D-amino acids tripeptide docking. by sam_dc » Sat, 2021-07-03 08:48 |
2 |
1,548 |
by vmulligan Tue, 2021-07-06 08:27 |
|
|
ddG filter gives deltaG calculation number? by jarod » Tue, 2013-05-28 23:43 |
2 |
3,992 |
by jarod Mon, 2014-04-21 06:47 |
|
|
Docking seems to not parse the -nstruct flag by rosend » Tue, 2015-11-17 12:01 |
2 |
3,832 |
by rosend Tue, 2015-11-17 12:12 |
|
|
clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
3 |
4,103 |
by rmoretti Mon, 2014-05-12 08:45 |
|
|
Up to date Vall database by JadAbbass » Sat, 2013-06-29 10:35 |
3 |
5,948 |
by rmoretti Tue, 2017-06-20 09:02 |
|
|
Missing common atom definitions in constraints by ic3reyes » Sat, 2011-06-11 13:09 |
3 |
5,189 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
sam.predict-2nd for make_fragments.pl script by sumukh21 » Thu, 2011-02-17 12:29 |
3 |
4,862 |
by fukamitka Mon, 2014-04-21 06:47 |
|
|
Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
3 |
3,344 |
by rmoretti Thu, 2017-08-24 11:00 |
|
|
fragment_picker with fasta only by gw » Tue, 2011-11-15 13:20 |
3 |
4,490 |
by gw Mon, 2014-04-21 06:47 |
|
|
Modeling of side-chains onto membrane ab initio cluster? by akfried » Thu, 2011-06-23 04:03 |
3 |
4,113 |
by nkemjika Mon, 2014-04-21 06:47 |
|
|
Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
3 |
3,913 |
by G Mustafa Thu, 2018-10-18 05:31 |
|
|
How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
3 |
3,369 |
by rmoretti Wed, 2017-03-01 13:10 |
|
|
NCAA attached at two points by tsztain » Wed, 2021-06-16 15:20 |
3 |
1,869 |
by matteoferla Sat, 2021-06-19 03:07 |
|
|
ddg monomer vs pmut scan by dave » Tue, 2014-03-04 10:18 |
3 |
4,546 |
by smlewis Fri, 2014-03-07 13:02 |
|
|
Residue_energy_breakdown utility by cn » Sat, 2012-03-17 06:11 |
3 |
3,666 |
by cn Mon, 2014-04-21 06:47 |
|
|
Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
3 |
3,808 |
by brspurri Fri, 2017-03-24 11:35 |
|
|
protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
3 |
3,643 |
by ajasja Wed, 2019-05-15 15:40 |
|
|
Using Rosetta Docking for nucleic acids by Adrien Guilhot » Thu, 2011-04-28 06:16 |
3 |
5,189 |
by Adrien Guilhot Mon, 2014-04-21 06:47 |
|
|
pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
3 |
4,460 |
by matteoferla Tue, 2018-10-30 02:54 |
|
|
No Space by jrcf » Mon, 2016-01-11 16:18 |
3 |
3,545 |
by jrcf Fri, 2016-02-12 16:42 |
|
|
ddg_monomer.mpi by gw » Thu, 2011-10-27 16:45 |
3 |
4,271 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to preserve ACE/NME termini? by nitroamos » Tue, 2018-05-22 13:07 |
3 |
3,815 |
by rmoretti Thu, 2018-06-28 12:44 |
|
|
Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
3 |
2,965 |
by smlewis Mon, 2018-10-15 08:42 |
|
|
ddg_monomer: what is the theoretical solution condition for the scoring? by lanselibai » Sat, 2016-04-30 03:26 |
3 |
3,929 |
by smlewis Mon, 2016-05-02 08:20 |
|
|
Error encountered during Rosetta loop modeling by max » Tue, 2014-11-25 02:17 |
3 |
3,887 |
by max Thu, 2014-11-27 02:56 |
|
|
Loop modeling with constraints by agctomer » Sat, 2021-03-20 03:53 |
3 |
2,013 |
by agctomer Thu, 2021-04-08 07:37 |
Log in to post new content in the forum.
