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St13runtime_error in Rosetta ligand docking by syntekabio2019 » Thu, 2023-02-09 18:18 |
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2,521 |
by syntekabio2019 Sun, 2023-02-19 18:39 |
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RosettaScripts - SetupNCS mover by felipet » Fri, 2016-03-25 12:42 |
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2,533 |
by rmoretti Fri, 2016-04-29 08:26 |
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Ligand Docking with RosettaScripts gives a ParsedProtocol exception by brspurri » Sun, 2017-05-14 17:51 |
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2,807 |
by brspurri Mon, 2017-05-15 11:48 |
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Error in using “loopmodel” for selective rebuilding by sushreet » Mon, 2014-07-14 11:57 |
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2,705 |
by sushreet Tue, 2014-08-26 13:02 |
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Floppy tail: sidechain mutation during calculation by syoifczeri » Mon, 2015-03-09 19:01 |
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2,950 |
by syoifczeri Tue, 2015-03-10 23:08 |
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Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
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3,810 |
by RMJ Mon, 2014-04-21 06:47 |
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Modeling more than one protein loop at the same time by hzhekova » Mon, 2018-01-15 14:03 |
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2,831 |
by hzhekova Tue, 2018-01-16 10:31 |
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RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour() by sam_dc » Thu, 2021-03-25 09:32 |
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2,083 |
by sam_dc Mon, 2021-04-12 07:24 |
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clustering by ays » Tue, 2014-09-30 08:26 |
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3,123 |
by rmoretti Mon, 2014-10-06 16:00 |
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How to make new VALL database? by Danielsebas » Sun, 2019-09-08 02:16 |
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2,267 |
by Danielsebas Wed, 2019-09-11 00:44 |
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Generate fragment locally by deltag » Wed, 2012-02-01 06:26 |
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3,309 |
by deltag Mon, 2014-04-21 06:47 |
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rosetta_cm segfault by browns02 » Fri, 2021-07-09 13:35 |
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1,124 |
by rmoretti Fri, 2021-07-09 15:05 |
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RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
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3,852 |
by jtmacd Fri, 2015-12-04 03:11 |
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Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
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2,802 |
by rmoretti Tue, 2017-03-28 08:51 |
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Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
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1,990 |
by johnnytam100 Tue, 2019-05-21 22:33 |
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how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
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1,346 |
by qq7678500549 Sun, 2020-08-09 18:59 |
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MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
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3,450 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Including ab-initio predicted model in fragment library generation by ashu4487 » Thu, 2016-12-08 17:49 |
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2,220 |
by ashu4487 Sun, 2016-12-11 19:03 |
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Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
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2,759 |
by allan.ferrari Fri, 2015-08-28 12:07 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
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1,509 |
by Kotimedidhi Mon, 2020-06-22 16:19 |
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does the loop kinetic support MPI now? by albumns » Fri, 2012-10-26 06:31 |
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2,386 |
by smlewis Mon, 2014-04-21 06:47 |
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ddG filter gives deltaG calculation number? by jarod » Tue, 2013-05-28 23:43 |
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3,733 |
by jarod Mon, 2014-04-21 06:47 |
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Reproducing the exact result using information from previos run by nawsad » Thu, 2013-03-14 12:05 |
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2,460 |
by nawsad Mon, 2014-04-21 06:47 |
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FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
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3,095 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
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1,647 |
by bjharris Thu, 2020-07-02 11:09 |
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How do I change the default Compiler for Rosetta？ by pagumaaaaa » Wed, 2022-03-16 00:23 |
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1,199 |
by pagumaaaaa Thu, 2022-03-24 22:40 |
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Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
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2,568 |
by kalabharath Wed, 2015-04-29 16:21 |
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Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
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1,497 |
by tuleshwori Thu, 2020-05-21 02:08 |
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Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
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2,822 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
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RosettaScript Segmentation Fault (crash log attached) by chrisHKL » Thu, 2020-03-05 07:21 |
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2,051 |
by chrisHKL Thu, 2020-03-05 09:11 |
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Disulfide Bonds in Loop Modeling by code_Monkey » Mon, 2021-05-03 08:27 |
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1,288 |
by code_Monkey Thu, 2021-05-06 07:14 |
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RosettaRemodel by gw » Wed, 2011-09-14 13:24 |
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3,423 |
by smlewis Mon, 2014-04-21 06:47 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
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3,657 |
by Pernille Thu, 2014-07-03 07:21 |
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Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
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2,797 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
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-loops:fa_input not found in command line top-level context by swarekwood » Thu, 2017-08-24 03:15 |
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2,382 |
by swarekwood Fri, 2017-08-25 05:08 |
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ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
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1,580 |
by Ruska322 Fri, 2019-09-06 07:13 |
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ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
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1,437 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
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How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
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1,675 |
by dnamkr Fri, 2022-04-22 17:00 |
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high-res docking by tfliu » Mon, 2013-07-15 02:49 |
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3,153 |
by tfliu Mon, 2014-04-21 06:48 |
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error extracting PDB from silent from AbinitioRelax with constraints by attesor » Wed, 2017-06-14 04:15 |
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2,158 |
by smlewis Fri, 2017-06-16 07:35 |
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homology modeling- Error: length mismatch between sequence and alignment. by pdbb » Mon, 2012-10-01 07:57 |
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4,251 |
by pdbb Mon, 2014-04-21 06:47 |
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
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2,997 |
by attesor Tue, 2015-11-17 07:36 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
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2,678 |
by David Weis Mon, 2017-03-13 06:40 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
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1,758 |
by Martin Floor Tue, 2020-01-21 11:15 |
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DDG monomer and backrub motions by yperez » Thu, 2012-06-21 08:10 |
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3,193 |
by yperez Mon, 2014-04-21 06:47 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
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2,850 |
by Pernille Wed, 2014-10-08 10:41 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
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2,915 |
by mintseris Wed, 2015-06-24 22:04 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
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2,647 |
by rmoretti Fri, 2015-01-02 09:43 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
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1,510 |
by jlawrie Wed, 2020-08-12 08:57 |
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scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
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3,412 |
by rmoretti Tue, 2016-07-12 09:05 |
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KIC with fragments versus Next generation KIC by Loki01 » Fri, 2018-09-07 05:06 |
3 |
2,686 |
by smlewis Mon, 2018-09-10 11:48 |
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Transmembrane helix fold-and-dock? by sarah_b » Tue, 2020-05-12 02:09 |
3 |
2,021 |
by jkleman Tue, 2020-05-19 15:02 |
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Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
3 |
3,665 |
by Marius1987 Mon, 2016-03-14 04:34 |
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Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
3 |
3,301 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
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partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
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3,953 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
3 |
2,146 |
by Danielsebas Thu, 2019-09-05 03:35 |
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De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
3 |
3,363 |
by dee2711453 Fri, 2016-03-11 21:32 |
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The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
3 |
2,928 |
by rmoretti Thu, 2018-06-28 12:58 |
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what does initialize_rigid_body_dofs do? by attesor » Mon, 2015-10-26 05:12 |
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3,709 |
by rmoretti Tue, 2015-11-10 11:35 |
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Enzdes constraint file not defined correctly by eyong123 » Fri, 2015-03-27 07:16 |
3 |
3,574 |
by rmoretti Thu, 2015-04-16 10:38 |
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assymetric dymer modelling with comparative and ab initio by marcia » Mon, 2013-10-14 08:33 |
3 |
4,647 |
by rmoretti Mon, 2014-04-21 06:48 |
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Docking one protein into interface between two other proteins by Cheems » Sat, 2023-05-06 09:49 |
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321 |
by rmoretti Mon, 2023-05-08 13:14 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
3 |
3,820 |
by rmoretti Mon, 2014-05-12 08:45 |
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Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
3 |
3,990 |
by ahonegger Mon, 2014-04-21 06:47 |
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Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
3 |
3,564 |
by G Mustafa Thu, 2018-10-18 05:31 |
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How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
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3,013 |
by rmoretti Wed, 2017-03-01 13:10 |
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Ligand dock analysis by sacch » Tue, 2012-05-22 01:20 |
3 |
3,691 |
by glemmon Mon, 2014-04-21 06:47 |
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Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
3 |
2,985 |
by rmoretti Thu, 2017-08-24 11:00 |
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NCAA attached at two points by tsztain » Wed, 2021-06-16 15:20 |
3 |
1,461 |
by matteoferla Sat, 2021-06-19 03:07 |
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ddg monomer vs pmut scan by dave » Tue, 2014-03-04 10:18 |
3 |
4,205 |
by smlewis Fri, 2014-03-07 13:02 |
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score to use for picking top docking solutions? by sudhar » Tue, 2011-06-14 06:47 |
3 |
5,578 |
by weitzner Mon, 2014-04-21 06:47 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
3 |
3,731 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaAntibody by mpendleton » Mon, 2011-04-04 10:27 |
3 |
4,743 |
by jianqing Mon, 2014-04-21 06:47 |
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Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
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3,459 |
by brspurri Fri, 2017-03-24 11:35 |
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protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
3 |
3,167 |
by ajasja Wed, 2019-05-15 15:40 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
3 |
4,122 |
by matteoferla Tue, 2018-10-30 02:54 |
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No Space by jrcf » Mon, 2016-01-11 16:18 |
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3,238 |
by jrcf Fri, 2016-02-12 16:42 |
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ERROR: no fragment to compute secondary structure by byin » Sun, 2011-08-07 23:55 |
3 |
4,299 |
by smlewis Mon, 2014-04-21 06:47 |
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Abrelax - Dunbrack02.lib.bin missing by omirus » Sun, 2011-09-18 06:30 |
3 |
4,684 |
by smlewis Mon, 2014-04-21 06:47 |
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make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
3 |
4,937 |
by smlewis Mon, 2014-04-21 06:47 |
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loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
3 |
4,016 |
by rmoretti Mon, 2014-04-21 06:47 |
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Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
3 |
2,627 |
by smlewis Mon, 2018-10-15 08:42 |
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How to preserve ACE/NME termini? by nitroamos » Tue, 2018-05-22 13:07 |
3 |
3,409 |
by rmoretti Thu, 2018-06-28 12:44 |
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Discrepancy between the total pose energy and sum of per residue energies by vijayan » Tue, 2013-07-02 07:24 |
3 |
4,280 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddg_monomer: what is the theoretical solution condition for the scoring? by lanselibai » Sat, 2016-04-30 03:26 |
3 |
3,602 |
by smlewis Mon, 2016-05-02 08:20 |
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Error encountered during Rosetta loop modeling by max » Tue, 2014-11-25 02:17 |
3 |
3,530 |
by max Thu, 2014-11-27 02:56 |
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Loop modeling with constraints by agctomer » Sat, 2021-03-20 03:53 |
3 |
1,592 |
by agctomer Thu, 2021-04-08 07:37 |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
3,735 |
by xun Mon, 2014-04-21 06:47 |
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Loop prediction by yzhou » Thu, 2013-07-18 14:24 |
3 |
4,102 |
by jadolfbr Mon, 2014-04-21 06:48 |
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relax a protein with phosphorylated serine residue by zruan » Thu, 2018-02-01 09:18 |
3 |
2,688 |
by rmoretti Tue, 2018-02-06 09:47 |
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analysis of clustering by loris.moretti » Thu, 2012-04-19 02:52 |
3 |
6,798 |
by rmoretti Mon, 2014-04-21 06:47 |
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Relax both peptide and ligands by matteoferla » Thu, 2018-09-13 03:11 |
3 |
2,398 |
by smlewis Fri, 2018-09-14 10:34 |
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strange effect in: SymDock.linuxgccrelease by ast » Tue, 2013-06-11 11:05 |
3 |
3,641 |
by ast Mon, 2014-04-21 06:48 |
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New CSRosetta toolbox by sn » Mon, 2017-04-24 12:42 |
3 |
2,610 |
by rmoretti Tue, 2017-04-25 06:41 |
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How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior ) by asbelx » Sat, 2019-06-08 00:07 |
3 |
2,287 |
by happycaapi Tue, 2021-06-29 15:35 |
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using Rosetta to compute pH dependent binding? by JuliusSu » Sun, 2014-06-15 20:28 |
3 |
4,994 |
by rmoretti Tue, 2014-06-17 08:51 |
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InterfaceAnalyzer problem by almeida » Mon, 2014-03-03 14:56 |
3 |
4,668 |
by smlewis Fri, 2014-03-07 14:09 |
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FlexPepDocking with GDP-bound protein by LI » Sun, 2011-06-12 20:02 |
3 |
4,513 |
by rmoretti Mon, 2014-04-21 06:47 |
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auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
3 |
3,925 |
by beowulfey Tue, 2015-06-23 16:10 |
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RosettaScripts filter BuriedUnsatHbonds2 missing still by zdaw » Fri, 2020-12-11 12:39 |
3 |
1,557 |
by zdaw Tue, 2020-12-15 15:38 |
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