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Rosetta 3 - Applications
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RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow? by brspurri » Thu, 2020-05-14 11:15 |
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1,257 |
by brspurri Thu, 2020-05-14 12:24 |
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CSrosetta run problem by erin_cutts » Fri, 2013-06-28 09:52 |
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3,346 |
by erin_cutts Mon, 2014-04-21 06:48 |
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Error in a new docking by jrcf » Wed, 2017-05-17 19:26 |
2 |
3,590 |
by tingting Tue, 2022-03-15 23:55 |
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Rosetta_cm Segmentation Fault by gszwabowski » Thu, 2019-06-20 12:55 |
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2,010 |
by gszwabowski Wed, 2019-06-26 10:25 |
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cartfrag_overlap error while running hybridize protocol by sn » Thu, 2017-12-21 10:24 |
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1,843 |
by dnamkr Mon, 2019-12-30 11:43 |
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Error: in membrane docking : Cannot split pose by membrane jump! Quitting... by Astghik » Tue, 2020-11-24 05:27 |
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1,169 |
by Astghik Thu, 2020-12-03 02:35 |
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ligand_docking by yang » Thu, 2023-02-16 04:37 |
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1,753 |
by yang Wed, 2023-02-22 19:18 |
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Rosetta Script for ddg_monomer protocol 16 by cossio » Thu, 2018-01-25 08:23 |
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2,046 |
by cossio Sun, 2018-03-11 09:12 |
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Protein Ensemble RosettaLigand Docking by sam_dc » Fri, 2021-03-26 10:18 |
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1,078 |
by sam_dc Fri, 2021-03-26 12:04 |
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does the loop kinetic support MPI now? by albumns » Fri, 2012-10-26 06:31 |
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2,221 |
by smlewis Mon, 2014-04-21 06:47 |
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Flexpep docking freezing issue at "press enter to continue" by rlwoltz » Tue, 2013-01-22 13:31 |
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2,826 |
by rlwoltz Mon, 2014-04-21 06:47 |
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ab initio modelling - what to do next? by krlitros87 » Thu, 2014-10-16 13:05 |
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3,002 |
by krlitros87 Wed, 2014-10-22 09:31 |
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score:weights for fixbb application in Rosetta 3.5 by tylerborrman » Tue, 2015-07-28 14:16 |
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2,423 |
by tylerborrman Wed, 2015-09-23 10:51 |
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Altering substrate specificity by bp » Thu, 2016-12-22 02:45 |
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2,256 |
by bp Thu, 2016-12-22 07:54 |
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Model monomer to fit cryo density map of a filament by BuddySphinx » Wed, 2018-12-12 18:58 |
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1,679 |
by BuddySphinx Sun, 2018-12-30 16:49 |
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RosettaRemodel by gw » Wed, 2011-09-14 13:24 |
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3,213 |
by smlewis Mon, 2014-04-21 06:47 |
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BUG REPORT: Remodel Resfile ERROR: LEU was added more than once? by daniloboskovic » Wed, 2020-04-29 01:17 |
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1,359 |
by daniloboskovic Wed, 2020-04-29 05:51 |
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Docking-RMS value nan by jlawrie » Wed, 2020-08-12 07:03 |
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1,259 |
by jlawrie Wed, 2020-08-12 07:27 |
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r_frag_quality by ii_cnr » Mon, 2021-04-12 03:06 |
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963 |
by ii_cnr Mon, 2021-04-12 23:44 |
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How to add a residue to one chain of an existing structure? by sn » Mon, 2017-04-17 09:34 |
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2,638 |
by sn Thu, 2017-04-20 21:43 |
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protein interface design by Negarsardar » Tue, 2019-05-28 07:04 |
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1,704 |
by Negarsardar Thu, 2019-05-30 23:46 |
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Successful RosettaCM? by jlawrie » Wed, 2020-08-19 06:53 |
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1,288 |
by jlawrie Thu, 2020-08-20 11:00 |
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Filling the missing loops by code_Monkey » Tue, 2021-04-27 07:44 |
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1,055 |
by code_Monkey Tue, 2021-04-27 12:11 |
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Enzdes scorefile lost, can I recreate it by eyong123 » Wed, 2015-04-15 05:55 |
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2,350 |
by eyong123 Wed, 2015-04-22 11:33 |
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How to restart RASREC run by aep » Fri, 2016-07-01 04:39 |
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2,055 |
by aep Fri, 2016-07-01 06:54 |
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RosettaCM hybridize mover error after fragment picking by amorin » Thu, 2018-09-06 11:03 |
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1,962 |
by dnamkr Thu, 2019-12-26 10:22 |
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How to run partial_thread in RosettaCM when residure are more than 9999? by lanselibai » Mon, 2020-05-11 22:43 |
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1,602 |
by lanselibai Tue, 2020-05-12 20:25 |
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hbond_sr_bb and hbond_lr_bb for different chains by tylerborrman » Tue, 2020-10-13 13:41 |
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1,291 |
by tylerborrman Tue, 2021-02-09 16:33 |
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How to preserve ACE/NME termini? by nitroamos » Tue, 2018-05-22 13:07 |
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3,065 |
by rmoretti Thu, 2018-06-28 12:44 |
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loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
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3,816 |
by rmoretti Mon, 2014-04-21 06:47 |
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ddg_monomer.mpi by gw » Thu, 2011-10-27 16:45 |
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3,703 |
by smlewis Mon, 2014-04-21 06:47 |
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Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
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2,335 |
by smlewis Mon, 2018-10-15 08:42 |
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Discrepancy between the total pose energy and sum of per residue energies by vijayan » Tue, 2013-07-02 07:24 |
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4,037 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddg_monomer: what is the theoretical solution condition for the scoring? by lanselibai » Sat, 2016-04-30 03:26 |
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3,353 |
by smlewis Mon, 2016-05-02 08:20 |
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Error encountered during Rosetta loop modeling by max » Tue, 2014-11-25 02:17 |
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3,289 |
by max Thu, 2014-11-27 02:56 |
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Loop modeling with constraints by agctomer » Sat, 2021-03-20 03:53 |
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1,344 |
by agctomer Thu, 2021-04-08 07:37 |
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partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
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3,741 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop prediction by yzhou » Thu, 2013-07-18 14:24 |
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3,880 |
by jadolfbr Mon, 2014-04-21 06:48 |
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relax a protein with phosphorylated serine residue by zruan » Thu, 2018-02-01 09:18 |
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2,450 |
by rmoretti Tue, 2018-02-06 09:47 |
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strange effect in: SymDock.linuxgccrelease by ast » Tue, 2013-06-11 11:05 |
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3,432 |
by ast Mon, 2014-04-21 06:48 |
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New CSRosetta toolbox by sn » Mon, 2017-04-24 12:42 |
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2,371 |
by rmoretti Tue, 2017-04-25 06:41 |
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How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior ) by asbelx » Sat, 2019-06-08 00:07 |
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2,034 |
by happycaapi Tue, 2021-06-29 15:35 |
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Relax both peptide and ligands by matteoferla » Thu, 2018-09-13 03:11 |
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2,136 |
by smlewis Fri, 2018-09-14 10:34 |
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using Rosetta to compute pH dependent binding? by JuliusSu » Sun, 2014-06-15 20:28 |
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4,576 |
by rmoretti Tue, 2014-06-17 08:51 |
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auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
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3,676 |
by beowulfey Tue, 2015-06-23 16:10 |
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RosettaScripts filter BuriedUnsatHbonds2 missing still by zdaw » Fri, 2020-12-11 12:39 |
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1,320 |
by zdaw Tue, 2020-12-15 15:38 |
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InterfaceAnalyzer problem by almeida » Mon, 2014-03-03 14:56 |
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4,385 |
by smlewis Fri, 2014-03-07 14:09 |
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problem with fixed_membrane option of membrane abinitio by yescalona » Thu, 2013-01-17 15:42 |
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3,142 |
by smlewis Mon, 2014-04-21 06:47 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
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2,184 |
by smlewis Wed, 2018-12-12 16:51 |
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ligand_docking_error by Alison_Yajie » Mon, 2020-04-20 12:27 |
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1,736 |
by YuFei Sat, 2020-05-30 00:12 |
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Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
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3,785 |
by ahonegger Mon, 2014-04-21 06:47 |
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remodel gives no output by coomteng@gmail.com » Tue, 2018-03-06 07:40 |
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2,603 |
by rmoretti Wed, 2018-03-07 08:44 |
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Problems with always_constrained_relax_script by wsgosal » Wed, 2013-05-29 04:39 |
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4,325 |
by rmoretti Mon, 2014-04-21 06:47 |
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High energies after loopmodel run by michki » Thu, 2014-05-08 05:14 |
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3,512 |
by rmoretti Mon, 2014-05-12 15:16 |
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xyzVector error in Enzyme design by ajmbarbosa » Tue, 2016-01-05 09:46 |
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3,727 |
by rmoretti Fri, 2016-06-17 10:36 |
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Running RosettaHoles2 by weehee » Wed, 2013-02-13 09:35 |
3 |
3,235 |
by weehee Mon, 2014-04-21 06:47 |
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Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
3 |
3,707 |
by rmoretti Wed, 2015-09-02 12:33 |
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RosettaCM input file for running on Stampede by smathersc » Wed, 2017-01-18 16:12 |
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2,724 |
by rmoretti Thu, 2017-02-02 09:02 |
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Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB by rlwoltz » Thu, 2019-01-24 19:43 |
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3,341 |
by bjharris Sun, 2020-08-23 14:03 |
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DockingProtocol by Soler » Fri, 2022-02-11 00:12 |
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1,169 |
by gezmi Tue, 2022-02-15 21:47 |
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revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
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3,646 |
by rmoretti Tue, 2016-07-12 09:30 |
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The confussion about an example in tutorial in Rosetta Virtual Workshop 2020 by ldx022 » Tue, 2022-11-29 04:58 |
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3,600 |
by ldx022 Tue, 2022-11-29 08:38 |
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Ligand dock analysis by sacch » Tue, 2012-05-22 01:20 |
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3,505 |
by glemmon Mon, 2014-04-21 06:47 |
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Docking membrane ions and water by jrcf » Tue, 2017-02-07 15:47 |
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2,759 |
by smlewis Wed, 2017-02-15 07:43 |
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RosettaDock 4.0 ambiguous ERROR by sam_dc » Fri, 2022-03-18 09:36 |
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1,183 |
by rmoretti Tue, 2022-03-22 09:10 |
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score to use for picking top docking solutions? by sudhar » Tue, 2011-06-14 06:47 |
3 |
5,287 |
by weitzner Mon, 2014-04-21 06:47 |
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RosettaAntibody by mpendleton » Mon, 2011-04-04 10:27 |
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4,519 |
by jianqing Mon, 2014-04-21 06:47 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
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1,580 |
by ctqwong Mon, 2020-07-27 01:48 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
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3,141 |
by brspurri Sat, 2017-08-26 07:08 |
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What is a rational minimal value for the "-nstruct" option by Sunyp_IM » Fri, 2020-05-22 01:28 |
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1,640 |
by nannemdp Sun, 2020-05-24 14:46 |
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issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
3 |
1,870 |
by He Xiao Sun, 2021-04-11 19:29 |
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ERROR: no fragment to compute secondary structure by byin » Sun, 2011-08-07 23:55 |
3 |
4,079 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
3 |
3,366 |
by rmoretti Tue, 2016-07-12 09:41 |
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What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"? by lanselibai » Fri, 2014-10-17 06:06 |
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20,565 |
by rmoretti Fri, 2014-10-17 10:17 |
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Abrelax - Dunbrack02.lib.bin missing by omirus » Sun, 2011-09-18 06:30 |
3 |
4,455 |
by smlewis Mon, 2014-04-21 06:47 |
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make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
3 |
4,655 |
by smlewis Mon, 2014-04-21 06:47 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
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3,187 |
by lanselibai Tue, 2015-01-13 14:25 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
3 |
2,500 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
3,521 |
by xun Mon, 2014-04-21 06:47 |
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RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
3 |
2,531 |
by smlewis Mon, 2017-01-23 06:26 |
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Why is proline hydroxylated？ by kwonglynn » Tue, 2013-06-25 02:38 |
3 |
4,749 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
3 |
4,393 |
by rmoretti Wed, 2014-07-02 16:55 |
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Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
3 |
1,424 |
by vizcarra Thu, 2021-08-26 10:16 |
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dihedral_between_bonded_children: atoms are not both my children! by pdbb » Fri, 2013-04-05 06:40 |
3 |
2,936 |
by smlewis Mon, 2014-04-21 06:47 |
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Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
3 |
4,488 |
by rmoretti Mon, 2014-04-21 06:47 |
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Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
3 |
2,472 |
by rmoretti Tue, 2017-08-22 09:03 |
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relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
3 |
1,721 |
by smlewis Thu, 2020-05-21 21:05 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
3 |
2,477 |
by rmoretti Mon, 2018-11-12 14:35 |
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RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
3 |
1,325 |
by everyday847 Wed, 2020-12-09 21:46 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
3 |
3,486 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error when running cluster by aloshbau » Wed, 2013-05-01 20:45 |
3 |
4,181 |
by rmoretti Mon, 2014-04-21 06:47 |
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cluster.mpi.linuxgccrelease failed by fred » Mon, 2014-02-24 12:11 |
3 |
7,516 |
by fred Thu, 2014-03-27 11:29 |
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Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
3 |
2,834 |
by sn Mon, 2017-03-06 10:03 |
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clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
3 |
1,850 |
by rmoretti Tue, 2020-07-28 08:24 |
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Homology Modelling with cofactors by Derek Smith » Thu, 2015-07-09 08:24 |
3 |
3,974 |
by Derek Smith Wed, 2016-02-03 05:47 |
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how to make "static" built binaries use multiple cpus like "mpi"? by Danielsebas » Wed, 2019-09-18 06:41 |
3 |
2,048 |
by rmoretti Wed, 2019-09-18 10:21 |
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analysis of clustering by loris.moretti » Thu, 2012-04-19 02:52 |
3 |
6,544 |
by rmoretti Mon, 2014-04-21 06:47 |
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HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
3 |
3,719 |
by protos_heis Tue, 2014-08-05 12:47 |
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Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
3 |
3,427 |
by dswhit Tue, 2015-04-21 10:14 |
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deltaG calculations by Prasanth Kumar » Wed, 2013-05-15 07:06 |
3 |
5,789 |
by rmoretti Mon, 2014-04-21 06:47 |
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