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Rosetta 3 - Applications
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remodel gives no output by coomteng@gmail.com » Tue, 2018-03-06 07:40 |
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2,229 |
by rmoretti Wed, 2018-03-07 08:44 |
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problem with fixed_membrane option of membrane abinitio by yescalona » Thu, 2013-01-17 15:42 |
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2,880 |
by smlewis Mon, 2014-04-21 06:47 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
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1,782 |
by smlewis Wed, 2018-12-12 16:51 |
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Residue_energy_breakdown utility by cn » Sat, 2012-03-17 06:11 |
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2,891 |
by cn Mon, 2014-04-21 06:47 |
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ligand_docking_error by Alison_Yajie » Mon, 2020-04-20 12:27 |
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1,405 |
by YuFei Sat, 2020-05-30 00:12 |
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Problems with always_constrained_relax_script by wsgosal » Wed, 2013-05-29 04:39 |
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4,036 |
by rmoretti Mon, 2014-04-21 06:47 |
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High energies after loopmodel run by michki » Thu, 2014-05-08 05:14 |
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3,198 |
by rmoretti Mon, 2014-05-12 15:16 |
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xyzVector error in Enzyme design by ajmbarbosa » Tue, 2016-01-05 09:46 |
3 |
3,360 |
by rmoretti Fri, 2016-06-17 10:36 |
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Running RosettaHoles2 by weehee » Wed, 2013-02-13 09:35 |
3 |
2,940 |
by weehee Mon, 2014-04-21 06:47 |
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Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
3 |
3,374 |
by rmoretti Wed, 2015-09-02 12:33 |
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RosettaCM input file for running on Stampede by smathersc » Wed, 2017-01-18 16:12 |
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2,416 |
by rmoretti Thu, 2017-02-02 09:02 |
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Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB by rlwoltz » Thu, 2019-01-24 19:43 |
3 |
2,741 |
by bjharris Sun, 2020-08-23 14:03 |
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DockingProtocol by Soler » Fri, 2022-02-11 00:12 |
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435 |
by gezmi Tue, 2022-02-15 21:47 |
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Using Rosetta Docking for nucleic acids by Adrien Guilhot » Thu, 2011-04-28 06:16 |
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4,234 |
by Adrien Guilhot Mon, 2014-04-21 06:47 |
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revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
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3,305 |
by rmoretti Tue, 2016-07-12 09:30 |
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Docking membrane ions and water by jrcf » Tue, 2017-02-07 15:47 |
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2,396 |
by smlewis Wed, 2017-02-15 07:43 |
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RosettaDock 4.0 ambiguous ERROR by sam_dc » Fri, 2022-03-18 09:36 |
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302 |
by rmoretti Tue, 2022-03-22 09:10 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
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2,692 |
by brspurri Sat, 2017-08-26 07:08 |
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What is a rational minimal value for the "-nstruct" option by Sunyp_IM » Fri, 2020-05-22 01:28 |
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1,300 |
by nannemdp Sun, 2020-05-24 14:46 |
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ddg_monomer.mpi by gw » Thu, 2011-10-27 16:45 |
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3,334 |
by smlewis Mon, 2014-04-21 06:47 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
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1,254 |
by ctqwong Mon, 2020-07-27 01:48 |
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issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
3 |
1,310 |
by He Xiao Sun, 2021-04-11 19:29 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
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3,031 |
by rmoretti Tue, 2016-07-12 09:41 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
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2,874 |
by lanselibai Tue, 2015-01-13 14:25 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
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2,047 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
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3,424 |
by smlewis Mon, 2014-04-21 06:47 |
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What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"? by lanselibai » Fri, 2014-10-17 06:06 |
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20,232 |
by rmoretti Fri, 2014-10-17 10:17 |
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RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
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2,218 |
by smlewis Mon, 2017-01-23 06:26 |
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Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
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2,086 |
by rmoretti Tue, 2017-08-22 09:03 |
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relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
3 |
1,338 |
by smlewis Thu, 2020-05-21 21:05 |
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Why is proline hydroxylated？ by kwonglynn » Tue, 2013-06-25 02:38 |
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4,432 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
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3,963 |
by rmoretti Wed, 2014-07-02 16:55 |
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Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
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928 |
by vizcarra Thu, 2021-08-26 10:16 |
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dihedral_between_bonded_children: atoms are not both my children! by pdbb » Fri, 2013-04-05 06:40 |
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2,646 |
by smlewis Mon, 2014-04-21 06:47 |
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Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
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4,134 |
by rmoretti Mon, 2014-04-21 06:47 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
3 |
2,153 |
by rmoretti Mon, 2018-11-12 14:35 |
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RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
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991 |
by everyday847 Wed, 2020-12-09 21:46 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
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3,213 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error when running cluster by aloshbau » Wed, 2013-05-01 20:45 |
3 |
3,803 |
by rmoretti Mon, 2014-04-21 06:47 |
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cluster.mpi.linuxgccrelease failed by fred » Mon, 2014-02-24 12:11 |
3 |
7,156 |
by fred Thu, 2014-03-27 11:29 |
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Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
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2,442 |
by sn Mon, 2017-03-06 10:03 |
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clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
3 |
1,383 |
by rmoretti Tue, 2020-07-28 08:24 |
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deltaG calculations by Prasanth Kumar » Wed, 2013-05-15 07:06 |
3 |
5,338 |
by rmoretti Mon, 2014-04-21 06:47 |
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Homology Modelling with cofactors by Derek Smith » Thu, 2015-07-09 08:24 |
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3,618 |
by Derek Smith Wed, 2016-02-03 05:47 |
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how to make "static" built binaries use multiple cpus like "mpi"? by Danielsebas » Wed, 2019-09-18 06:41 |
3 |
1,633 |
by rmoretti Wed, 2019-09-18 10:21 |
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HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
3 |
3,411 |
by protos_heis Tue, 2014-08-05 12:47 |
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Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
3 |
3,101 |
by dswhit Tue, 2015-04-21 10:14 |
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Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM by ajkal » Fri, 2017-04-14 08:44 |
3 |
2,674 |
by rmoretti Thu, 2017-04-20 13:59 |
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Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
3 |
3,480 |
by ahonegger Mon, 2014-04-21 06:47 |
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ab initio by malkeet.singh » Thu, 2018-05-10 05:34 |
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2,476 |
by malkeet.singh Mon, 2018-05-21 04:26 |
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Docking to TM protein plus lipid bilayer by renedominik » Tue, 2019-03-12 06:58 |
3 |
2,125 |
by renedominik Tue, 2020-02-18 01:36 |
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Ligand dock analysis by sacch » Tue, 2012-05-22 01:20 |
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3,195 |
by glemmon Mon, 2014-04-21 06:47 |
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comparative modeling of protein-ligand complex by tevang » Mon, 2013-09-09 09:06 |
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3,600 |
by rmoretti Mon, 2014-04-21 06:48 |
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folding ectodomain in membrane ab initio by freedman » Mon, 2015-05-25 21:09 |
3 |
3,101 |
by rmoretti Fri, 2015-06-19 13:53 |
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Up to date Vall database by JadAbbass » Sat, 2013-06-29 10:35 |
3 |
4,761 |
by rmoretti Tue, 2017-06-20 09:02 |
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The error of InterfaceAnalyzer by asbelx » Thu, 2017-12-21 19:04 |
3 |
2,880 |
by smlewis Sat, 2017-12-23 15:56 |
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score to use for picking top docking solutions? by sudhar » Tue, 2011-06-14 06:47 |
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4,824 |
by weitzner Mon, 2014-04-21 06:47 |
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How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI by kingljy » Sun, 2017-09-24 18:37 |
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2,615 |
by rmoretti Tue, 2017-10-10 09:58 |
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"Install_dependencies.pl" gives "Aborted" when downloading "nr" database? by Danielsebas » Sat, 2019-09-14 08:53 |
3 |
1,365 |
by danpf Mon, 2019-09-16 09:51 |
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RosettaAntibody by mpendleton » Mon, 2011-04-04 10:27 |
3 |
4,175 |
by jianqing Mon, 2014-04-21 06:47 |
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Lammps or RosettaSurface by StevPChem » Fri, 2016-06-10 10:13 |
3 |
3,081 |
by Anpu Tue, 2018-09-25 18:53 |
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Extract PDB structures from database by cossio » Mon, 2018-01-29 09:30 |
3 |
2,608 |
by rmoretti Fri, 2018-11-23 11:23 |
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ERROR: no fragment to compute secondary structure by byin » Sun, 2011-08-07 23:55 |
3 |
3,752 |
by smlewis Mon, 2014-04-21 06:47 |
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Syntax for the alignment file in "minirosetta comparative modeling" by lanselibai » Thu, 2014-10-16 15:29 |
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3,737 |
by lanselibai Thu, 2014-10-23 03:26 |
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Constraints in RosettaCM by kbuhr » Fri, 2015-07-31 06:55 |
3 |
3,345 |
by kbuhr Mon, 2016-03-28 01:08 |
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Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex by benhardy » Mon, 2020-06-15 09:33 |
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1,231 |
by benhardy Fri, 2020-06-19 07:55 |
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Does it make sense if I do backrub after sequence design? by johnnytam100 » Thu, 2019-08-15 05:15 |
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1,494 |
by johnnytam100 Fri, 2019-08-16 00:20 |
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RosettaCM or FastRelax? by Tianyang89 » Wed, 2020-09-23 07:46 |
3 |
1,183 |
by danpf Thu, 2020-09-24 13:44 |
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Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
3 |
3,137 |
by Marius1987 Mon, 2016-03-14 04:34 |
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Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
3 |
2,682 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
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Abrelax - Dunbrack02.lib.bin missing by omirus » Sun, 2011-09-18 06:30 |
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4,115 |
by smlewis Mon, 2014-04-21 06:47 |
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make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
3 |
4,295 |
by smlewis Mon, 2014-04-21 06:47 |
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scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
3 |
2,840 |
by rmoretti Tue, 2016-07-12 09:05 |
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KIC with fragments versus Next generation KIC by Loki01 » Fri, 2018-09-07 05:06 |
3 |
2,118 |
by smlewis Mon, 2018-09-10 11:48 |
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Transmembrane helix fold-and-dock? by sarah_b » Tue, 2020-05-12 02:09 |
3 |
1,407 |
by jkleman Tue, 2020-05-19 15:02 |
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Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
3 |
1,544 |
by Danielsebas Thu, 2019-09-05 03:35 |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
3,194 |
by xun Mon, 2014-04-21 06:47 |
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De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
3 |
2,752 |
by dee2711453 Fri, 2016-03-11 21:32 |
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The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
3 |
2,307 |
by rmoretti Thu, 2018-06-28 12:58 |
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what does initialize_rigid_body_dofs do? by attesor » Mon, 2015-10-26 05:12 |
3 |
3,150 |
by rmoretti Tue, 2015-11-10 11:35 |
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assymetric dymer modelling with comparative and ab initio by marcia » Mon, 2013-10-14 08:33 |
3 |
4,088 |
by rmoretti Mon, 2014-04-21 06:48 |
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Enzdes constraint file not defined correctly by eyong123 » Fri, 2015-03-27 07:16 |
3 |
3,011 |
by rmoretti Thu, 2015-04-16 10:38 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
3 |
3,292 |
by rmoretti Mon, 2014-05-12 08:45 |
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analysis of clustering by loris.moretti » Thu, 2012-04-19 02:52 |
3 |
6,102 |
by rmoretti Mon, 2014-04-21 06:47 |
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Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
3 |
2,389 |
by rmoretti Thu, 2017-08-24 11:00 |
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parameterizing new residues by chiendarret » Fri, 2012-02-03 22:59 |
3 |
6,477 |
by rmoretti Mon, 2014-04-21 06:47 |
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Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
3 |
2,979 |
by G Mustafa Thu, 2018-10-18 05:31 |
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How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
3 |
2,412 |
by rmoretti Wed, 2017-03-01 13:10 |
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FlexPepDocking with GDP-bound protein by LI » Sun, 2011-06-12 20:02 |
3 |
3,949 |
by rmoretti Mon, 2014-04-21 06:47 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
3 |
3,234 |
by smlewis Mon, 2014-04-21 06:47 |
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NCAA attached at two points by tsztain » Wed, 2021-06-16 15:20 |
3 |
729 |
by matteoferla Sat, 2021-06-19 03:07 |
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ddg monomer vs pmut scan by dave » Tue, 2014-03-04 10:18 |
3 |
3,628 |
by smlewis Fri, 2014-03-07 13:02 |
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Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
3 |
2,849 |
by brspurri Fri, 2017-03-24 11:35 |
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protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
3 |
2,246 |
by ajasja Wed, 2019-05-15 15:40 |
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relax with resfile by gw » Fri, 2011-08-05 10:57 |
3 |
5,117 |
by nannemdp Mon, 2014-04-21 06:47 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
3 |
3,495 |
by matteoferla Tue, 2018-10-30 02:54 |
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No Space by jrcf » Mon, 2016-01-11 16:18 |
3 |
2,675 |
by jrcf Fri, 2016-02-12 16:42 |
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Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
3 |
3,333 |
by smlewis Mon, 2014-04-21 06:47 |
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How to preserve ACE/NME termini? by nitroamos » Tue, 2018-05-22 13:07 |
3 |
2,592 |
by rmoretti Thu, 2018-06-28 12:44 |
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loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
3 |
3,555 |
by rmoretti Mon, 2014-04-21 06:47 |
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