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Rosetta 3 - Applications

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Normal topic St13runtime_error in Rosetta ligand docking
by syntekabio2019 » Thu, 2023-02-09 18:18
2
2,521 by syntekabio2019
Sun, 2023-02-19 18:39
Normal topic RosettaScripts - SetupNCS mover
by felipet » Fri, 2016-03-25 12:42
2
2,533 by rmoretti
Fri, 2016-04-29 08:26
Normal topic Ligand Docking with RosettaScripts gives a ParsedProtocol exception
by brspurri » Sun, 2017-05-14 17:51
2
2,807 by brspurri
Mon, 2017-05-15 11:48
Normal topic Error in using “loopmodel” for selective rebuilding
by sushreet » Mon, 2014-07-14 11:57
2
2,705 by sushreet
Tue, 2014-08-26 13:02
Normal topic Floppy tail: sidechain mutation during calculation
by syoifczeri » Mon, 2015-03-09 19:01
2
2,950 by syoifczeri
Tue, 2015-03-10 23:08
Normal topic Problems running pmut in parallel with openmpi
by RMJ » Fri, 2012-09-21 06:25
2
3,810 by RMJ
Mon, 2014-04-21 06:47
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
2,831 by hzhekova
Tue, 2018-01-16 10:31
Normal topic RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour()
by sam_dc » Thu, 2021-03-25 09:32
2
2,083 by sam_dc
Mon, 2021-04-12 07:24
Normal topic clustering
by ays » Tue, 2014-09-30 08:26
2
3,123 by rmoretti
Mon, 2014-10-06 16:00
Normal topic How to make new VALL database?
by Danielsebas » Sun, 2019-09-08 02:16
2
2,267 by Danielsebas
Wed, 2019-09-11 00:44
Normal topic Generate fragment locally
by deltag » Wed, 2012-02-01 06:26
2
3,309 by deltag
Mon, 2014-04-21 06:47
Normal topic rosetta_cm segfault
by browns02 » Fri, 2021-07-09 13:35
2
1,124 by rmoretti
Fri, 2021-07-09 15:05
Normal topic RosettaScripts - FastRelax loops
by jtmacd » Wed, 2015-11-18 09:32
2
3,852 by jtmacd
Fri, 2015-12-04 03:11
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
2,802 by rmoretti
Tue, 2017-03-28 08:51
Normal topic Choosing weight file for interface design?
by johnnytam100 » Tue, 2019-05-07 00:47
2
1,990 by johnnytam100
Tue, 2019-05-21 22:33
Normal topic how to know the precedure of solving a actural bio problem? like interface design?
by qq7678500549 » Thu, 2020-08-06 18:45
2
1,346 by qq7678500549
Sun, 2020-08-09 18:59
Normal topic MaxSub and MaxSub2.0
by JadAbbass » Tue, 2013-10-15 13:36
2
3,450 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Including ab-initio predicted model in fragment library generation
by ashu4487 » Thu, 2016-12-08 17:49
2
2,220 by ashu4487
Sun, 2016-12-11 19:03
Normal topic Abinitio protocol and X-Ray diffraction data
by allan.ferrari » Wed, 2015-08-12 12:49
2
2,759 by allan.ferrari
Fri, 2015-08-28 12:07
Normal topic How to create a native file for Protein-Protein docking
by Kotimedidhi » Fri, 2020-06-19 08:58
2
1,509 by Kotimedidhi
Mon, 2020-06-22 16:19
Normal topic does the loop kinetic support MPI now?
by albumns » Fri, 2012-10-26 06:31
2
2,386 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddG filter gives deltaG calculation number?
by jarod » Tue, 2013-05-28 23:43
2
3,733 by jarod
Mon, 2014-04-21 06:47
Normal topic Reproducing the exact result using information from previos run
by nawsad » Thu, 2013-03-14 12:05
2
2,460 by nawsad
Mon, 2014-04-21 06:47
Normal topic FlexPepDock and total score problem
by tkellici » Fri, 2014-01-17 06:07
2
3,095 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic OptimizeMembranePositionMover - This element is not expected
by bjharris » Wed, 2020-07-01 23:21
2
1,647 by bjharris
Thu, 2020-07-02 11:09
Normal topic How do I change the default Compiler for Rosetta?
by pagumaaaaa » Wed, 2022-03-16 00:23
2
1,199 by pagumaaaaa
Thu, 2022-03-24 22:40
Normal topic Failing Fragment libraries us Chemical shifts with Robettaa
by kalabharath » Tue, 2015-04-28 19:33
2
2,568 by kalabharath
Wed, 2015-04-29 16:21
Normal topic Modelling temperature dependent RNA structures
by tuleshwori » Tue, 2020-05-19 01:16
2
1,497 by tuleshwori
Thu, 2020-05-21 02:08
Normal topic Calculate_protein_protein_ddg
by kamau » Fri, 2015-01-30 11:27
2
2,822 by deepanshuiitb
Thu, 2015-03-19 19:14
Normal topic RosettaScript Segmentation Fault (crash log attached)
by chrisHKL » Thu, 2020-03-05 07:21
2
2,051 by chrisHKL
Thu, 2020-03-05 09:11
Normal topic Disulfide Bonds in Loop Modeling
by code_Monkey » Mon, 2021-05-03 08:27
2
1,288 by code_Monkey
Thu, 2021-05-06 07:14
Normal topic RosettaRemodel
by gw » Wed, 2011-09-14 13:24
2
3,423 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fastrelax problem
by Pernille » Fri, 2014-06-20 00:16
2
3,657 by Pernille
Thu, 2014-07-03 07:21
Normal topic Filter ddg_filter reports failure!
by deepanshuiitb » Fri, 2015-02-27 18:19
2
2,797 by deepanshuiitb
Sat, 2015-02-28 19:24
Normal topic -loops:fa_input not found in command line top-level context
by swarekwood » Thu, 2017-08-24 03:15
2
2,382 by swarekwood
Fri, 2017-08-25 05:08
Normal topic ligand docking with MPI
by Ruska322 » Wed, 2019-09-04 03:47
2
1,580 by Ruska322
Fri, 2019-09-06 07:13
Normal topic ligand_docking ligand preparation
by Alison_Yajie » Thu, 2020-05-21 10:21
2
1,437 by Alison_Yajie
Wed, 2020-06-24 12:38
Normal topic How to Perform point mutations with NCAA
by Subhrodeep Saha » Tue, 2021-06-22 02:05
2
1,675 by dnamkr
Fri, 2022-04-22 17:00
Normal topic high-res docking
by tfliu » Mon, 2013-07-15 02:49
2
3,153 by tfliu
Mon, 2014-04-21 06:48
Normal topic error extracting PDB from silent from AbinitioRelax with constraints
by attesor » Wed, 2017-06-14 04:15
2
2,158 by smlewis
Fri, 2017-06-16 07:35
Normal topic homology modeling- Error: length mismatch between sequence and alignment.
by pdbb » Mon, 2012-10-01 07:57
2
4,251 by pdbb
Mon, 2014-04-21 06:47
Normal topic very good I_sc values (if not too good)
by attesor » Tue, 2015-11-03 03:30
2
2,997 by attesor
Tue, 2015-11-17 07:36
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
2,678 by David Weis
Mon, 2017-03-13 06:40
Normal topic Centroid mode minimization
by Martin Floor » Tue, 2020-01-21 07:34
2
1,758 by Martin Floor
Tue, 2020-01-21 11:15
Normal topic DDG monomer and backrub motions
by yperez » Thu, 2012-06-21 08:10
2
3,193 by yperez
Mon, 2014-04-21 06:47
Normal topic residues_patch_selectors CENTROID_HA
by Pernille » Fri, 2014-10-03 03:53
2
2,850 by Pernille
Wed, 2014-10-08 10:41
Normal topic docking with constraints and flexible bb
by mintseris » Mon, 2015-06-22 09:07
2
2,915 by mintseris
Wed, 2015-06-24 22:04
Normal topic Docking with constraint
by Hongtham » Sat, 2014-12-27 09:56
2
2,647 by rmoretti
Fri, 2015-01-02 09:43
Normal topic Docking-I_sc values do not correlate
by jlawrie » Wed, 2020-08-12 08:08
2
1,510 by jlawrie
Wed, 2020-08-12 08:57
Normal topic scoring input pdbs as the same as docking score
by hamedkhakzad » Fri, 2016-07-01 07:15
3
3,412 by rmoretti
Tue, 2016-07-12 09:05
Normal topic KIC with fragments versus Next generation KIC
by Loki01 » Fri, 2018-09-07 05:06
3
2,686 by smlewis
Mon, 2018-09-10 11:48
Normal topic Transmembrane helix fold-and-dock?
by sarah_b » Tue, 2020-05-12 02:09
3
2,021 by jkleman
Tue, 2020-05-19 15:02
Normal topic Missing CS-HM-Rosetta Binary files
by Marius1987 » Wed, 2016-02-10 05:52
3
3,665 by Marius1987
Mon, 2016-03-14 04:34
Normal topic Threading a sequence onto a template with ligands/metal ions included
by ajkal » Wed, 2017-04-19 11:53
3
3,301 by ahmadkhalifa
Sun, 2019-03-31 23:27
Normal topic partial ab initio modeling
by fred » Wed, 2011-08-17 14:14
3
3,953 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta make_fragments.pl error?
by Danielsebas » Mon, 2019-09-02 07:51
3
2,146 by Danielsebas
Thu, 2019-09-05 03:35
Normal topic De novo model-building guided by exprimental density data
by dee2711453 » Thu, 2016-03-10 17:28
3
3,363 by dee2711453
Fri, 2016-03-11 21:32
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
2,928 by rmoretti
Thu, 2018-06-28 12:58
Normal topic what does initialize_rigid_body_dofs do?
by attesor » Mon, 2015-10-26 05:12
3
3,709 by rmoretti
Tue, 2015-11-10 11:35
Normal topic Enzdes constraint file not defined correctly
by eyong123 » Fri, 2015-03-27 07:16
3
3,574 by rmoretti
Thu, 2015-04-16 10:38
Normal topic assymetric dymer modelling with comparative and ab initio
by marcia » Mon, 2013-10-14 08:33
3
4,647 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking one protein into interface between two other proteins
by Cheems » Sat, 2023-05-06 09:49
3
321 by rmoretti
Mon, 2023-05-08 13:14
Normal topic clustering in RosettaRemodel
by cheyuk » Wed, 2014-04-23 03:09
3
3,820 by rmoretti
Mon, 2014-05-12 08:45
Normal topic Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains
by ahonegger » Tue, 2012-04-24 01:34
3
3,990 by ahonegger
Mon, 2014-04-21 06:47
Normal topic Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file?
by lanselibai » Sun, 2014-11-16 10:26
3
3,564 by G Mustafa
Thu, 2018-10-18 05:31
Normal topic How tu use Delta filter's relax_mover
by pocin » Sun, 2017-02-19 05:21
3
3,013 by rmoretti
Wed, 2017-03-01 13:10
Normal topic Ligand dock analysis
by sacch » Tue, 2012-05-22 01:20
3
3,691 by glemmon
Mon, 2014-04-21 06:47
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
2,985 by rmoretti
Thu, 2017-08-24 11:00
Normal topic NCAA attached at two points
by tsztain » Wed, 2021-06-16 15:20
3
1,461 by matteoferla
Sat, 2021-06-19 03:07
Normal topic ddg monomer vs pmut scan
by dave » Tue, 2014-03-04 10:18
3
4,205 by smlewis
Fri, 2014-03-07 13:02
Normal topic score to use for picking top docking solutions?
by sudhar » Tue, 2011-06-14 06:47
3
5,578 by weitzner
Mon, 2014-04-21 06:47
Normal topic Can only relax one structure at a time
by lah435 » Wed, 2012-12-12 01:55
3
3,731 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaAntibody
by mpendleton » Mon, 2011-04-04 10:27
3
4,743 by jianqing
Mon, 2014-04-21 06:47
Normal topic Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB"
by brspurri » Fri, 2017-03-24 10:52
3
3,459 by brspurri
Fri, 2017-03-24 11:35
Normal topic protein protein interaction design
by Negarsardar » Wed, 2019-05-15 06:13
3
3,167 by ajasja
Wed, 2019-05-15 15:40
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
3
4,122 by matteoferla
Tue, 2018-10-30 02:54
Normal topic No Space
by jrcf » Mon, 2016-01-11 16:18
3
3,238 by jrcf
Fri, 2016-02-12 16:42
Normal topic ERROR: no fragment to compute secondary structure
by byin » Sun, 2011-08-07 23:55
3
4,299 by smlewis
Mon, 2014-04-21 06:47
Normal topic Abrelax - Dunbrack02.lib.bin missing
by omirus » Sun, 2011-09-18 06:30
3
4,684 by smlewis
Mon, 2014-04-21 06:47
Normal topic make fragment
by zadie1118 » Thu, 2012-08-30 07:45
3
4,937 by smlewis
Mon, 2014-04-21 06:47
Normal topic loopmodel thinks there are no residues in the pose
by lah435 » Wed, 2013-03-27 02:46
3
4,016 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Negative Design
by rbjacob » Thu, 2018-10-11 09:18
3
2,627 by smlewis
Mon, 2018-10-15 08:42
Normal topic How to preserve ACE/NME termini?
by nitroamos » Tue, 2018-05-22 13:07
3
3,409 by rmoretti
Thu, 2018-06-28 12:44
Normal topic Discrepancy between the total pose energy and sum of per residue energies
by vijayan » Tue, 2013-07-02 07:24
3
4,280 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ddg_monomer: what is the theoretical solution condition for the scoring?
by lanselibai » Sat, 2016-04-30 03:26
3
3,602 by smlewis
Mon, 2016-05-02 08:20
Normal topic Error encountered during Rosetta loop modeling
by max » Tue, 2014-11-25 02:17
3
3,530 by max
Thu, 2014-11-27 02:56
Normal topic Loop modeling with constraints
by agctomer » Sat, 2021-03-20 03:53
3
1,592 by agctomer
Thu, 2021-04-08 07:37
Normal topic proline patching problem
by xun » Tue, 2012-01-03 11:15
3
3,735 by xun
Mon, 2014-04-21 06:47
Normal topic Loop prediction
by yzhou » Thu, 2013-07-18 14:24
3
4,102 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic relax a protein with phosphorylated serine residue
by zruan » Thu, 2018-02-01 09:18
3
2,688 by rmoretti
Tue, 2018-02-06 09:47
Normal topic analysis of clustering
by loris.moretti » Thu, 2012-04-19 02:52
3
6,798 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Relax both peptide and ligands
by matteoferla » Thu, 2018-09-13 03:11
3
2,398 by smlewis
Fri, 2018-09-14 10:34
Normal topic strange effect in: SymDock.linuxgccrelease
by ast » Tue, 2013-06-11 11:05
3
3,641 by ast
Mon, 2014-04-21 06:48
Normal topic New CSRosetta toolbox
by sn » Mon, 2017-04-24 12:42
3
2,610 by rmoretti
Tue, 2017-04-25 06:41
Normal topic How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior )
by asbelx » Sat, 2019-06-08 00:07
3
2,287 by happycaapi
Tue, 2021-06-29 15:35
Normal topic using Rosetta to compute pH dependent binding?
by JuliusSu » Sun, 2014-06-15 20:28
3
4,994 by rmoretti
Tue, 2014-06-17 08:51
Normal topic InterfaceAnalyzer problem
by almeida » Mon, 2014-03-03 14:56
3
4,668 by smlewis
Fri, 2014-03-07 14:09
Normal topic FlexPepDocking with GDP-bound protein
by LI » Sun, 2011-06-12 20:02
3
4,513 by rmoretti
Mon, 2014-04-21 06:47
Normal topic auto_setup_metals flag with loop modeling application fails
by beowulfey » Wed, 2015-06-10 07:44
3
3,925 by beowulfey
Tue, 2015-06-23 16:10
Normal topic RosettaScripts filter BuriedUnsatHbonds2 missing still
by zdaw » Fri, 2020-12-11 12:39
3
1,557 by zdaw
Tue, 2020-12-15 15:38
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