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Rosetta 3 - Applications
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
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2,345 |
by David Weis Mon, 2017-03-13 06:40 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
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1,383 |
by Martin Floor Tue, 2020-01-21 11:15 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
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2,552 |
by Pernille Wed, 2014-10-08 10:41 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
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2,638 |
by mintseris Wed, 2015-06-24 22:04 |
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Reproducing the exact result using information from previos run by nawsad » Thu, 2013-03-14 12:05 |
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2,197 |
by nawsad Mon, 2014-04-21 06:47 |
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FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
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2,824 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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cluster.mpi running in MPI mode? by sacch » Fri, 2011-11-18 23:30 |
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3,910 |
by sacch Mon, 2014-04-21 06:47 |
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How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
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842 |
by dnamkr Fri, 2022-04-22 17:00 |
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error extracting PDB from silent from AbinitioRelax with constraints by attesor » Wed, 2017-06-14 04:15 |
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1,876 |
by smlewis Fri, 2017-06-16 07:35 |
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Floppytail modelling by felipet » Fri, 2011-06-24 09:23 |
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3,261 |
by felipet Mon, 2014-04-21 06:47 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
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2,332 |
by rmoretti Fri, 2015-01-02 09:43 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
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1,203 |
by jlawrie Wed, 2020-08-12 08:57 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
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3,330 |
by Pernille Thu, 2014-07-03 07:21 |
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Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
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3,541 |
by RMJ Mon, 2014-04-21 06:47 |
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Generate fragment locally by deltag » Wed, 2012-02-01 06:26 |
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3,061 |
by deltag Mon, 2014-04-21 06:47 |
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Abrelax - Dunbrack02.lib.bin missing by omirus » Sun, 2011-09-18 06:30 |
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4,326 |
by smlewis Mon, 2014-04-21 06:47 |
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Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
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3,334 |
by Marius1987 Mon, 2016-03-14 04:34 |
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Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
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2,903 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
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scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
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3,049 |
by rmoretti Tue, 2016-07-12 09:05 |
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KIC with fragments versus Next generation KIC by Loki01 » Fri, 2018-09-07 05:06 |
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2,336 |
by smlewis Mon, 2018-09-10 11:48 |
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Transmembrane helix fold-and-dock? by sarah_b » Tue, 2020-05-12 02:09 |
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1,635 |
by jkleman Tue, 2020-05-19 15:02 |
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Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
3 |
1,754 |
by Danielsebas Thu, 2019-09-05 03:35 |
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Residue_energy_breakdown utility by cn » Sat, 2012-03-17 06:11 |
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3,065 |
by cn Mon, 2014-04-21 06:47 |
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De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
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2,960 |
by dee2711453 Fri, 2016-03-11 21:32 |
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The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
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2,515 |
by rmoretti Thu, 2018-06-28 12:58 |
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what does initialize_rigid_body_dofs do? by attesor » Mon, 2015-10-26 05:12 |
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3,348 |
by rmoretti Tue, 2015-11-10 11:35 |
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Enzdes constraint file not defined correctly by eyong123 » Fri, 2015-03-27 07:16 |
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3,213 |
by rmoretti Thu, 2015-04-16 10:38 |
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assymetric dymer modelling with comparative and ab initio by marcia » Mon, 2013-10-14 08:33 |
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4,295 |
by rmoretti Mon, 2014-04-21 06:48 |
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Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
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2,612 |
by rmoretti Thu, 2017-08-24 11:00 |
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FlexPepDocking with GDP-bound protein by LI » Sun, 2011-06-12 20:02 |
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4,155 |
by rmoretti Mon, 2014-04-21 06:47 |
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Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
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3,195 |
by G Mustafa Thu, 2018-10-18 05:31 |
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How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
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2,630 |
by rmoretti Wed, 2017-03-01 13:10 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
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3,479 |
by rmoretti Mon, 2014-05-12 08:45 |
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NCAA attached at two points by tsztain » Wed, 2021-06-16 15:20 |
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1,041 |
by matteoferla Sat, 2021-06-19 03:07 |
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Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
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3,055 |
by brspurri Fri, 2017-03-24 11:35 |
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protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
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2,554 |
by ajasja Wed, 2019-05-15 15:40 |
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relax with resfile by gw » Fri, 2011-08-05 10:57 |
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5,373 |
by nannemdp Mon, 2014-04-21 06:47 |
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No Space by jrcf » Mon, 2016-01-11 16:18 |
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2,871 |
by jrcf Fri, 2016-02-12 16:42 |
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Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
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3,531 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg monomer vs pmut scan by dave » Tue, 2014-03-04 10:18 |
3 |
3,832 |
by smlewis Fri, 2014-03-07 13:02 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
3 |
3,410 |
by smlewis Mon, 2014-04-21 06:47 |
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Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
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2,197 |
by smlewis Mon, 2018-10-15 08:42 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
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3,719 |
by matteoferla Tue, 2018-10-30 02:54 |
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How to preserve ACE/NME termini? by nitroamos » Tue, 2018-05-22 13:07 |
3 |
2,886 |
by rmoretti Thu, 2018-06-28 12:44 |
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Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
3 |
3,668 |
by ahonegger Mon, 2014-04-21 06:47 |
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ddg_monomer: what is the theoretical solution condition for the scoring? by lanselibai » Sat, 2016-04-30 03:26 |
3 |
3,221 |
by smlewis Mon, 2016-05-02 08:20 |
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Error encountered during Rosetta loop modeling by max » Tue, 2014-11-25 02:17 |
3 |
3,181 |
by max Thu, 2014-11-27 02:56 |
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Loop modeling with constraints by agctomer » Sat, 2021-03-20 03:53 |
3 |
1,226 |
by agctomer Thu, 2021-04-08 07:37 |
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relax a protein with phosphorylated serine residue by zruan » Thu, 2018-02-01 09:18 |
3 |
2,332 |
by rmoretti Tue, 2018-02-06 09:47 |
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loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
3 |
3,720 |
by rmoretti Mon, 2014-04-21 06:47 |
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Ligand dock analysis by sacch » Tue, 2012-05-22 01:20 |
3 |
3,375 |
by glemmon Mon, 2014-04-21 06:47 |
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Discrepancy between the total pose energy and sum of per residue energies by vijayan » Tue, 2013-07-02 07:24 |
3 |
3,930 |
by rmoretti Mon, 2014-04-21 06:48 |
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New CSRosetta toolbox by sn » Mon, 2017-04-24 12:42 |
3 |
2,231 |
by rmoretti Tue, 2017-04-25 06:41 |
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How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior ) by asbelx » Sat, 2019-06-08 00:07 |
3 |
1,892 |
by happycaapi Tue, 2021-06-29 15:35 |
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Loop prediction by yzhou » Thu, 2013-07-18 14:24 |
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3,762 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Relax both peptide and ligands by matteoferla » Thu, 2018-09-13 03:11 |
3 |
2,006 |
by smlewis Fri, 2018-09-14 10:34 |
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Missing common atom definitions in constraints by ic3reyes » Sat, 2011-06-11 13:09 |
3 |
4,517 |
by smlewis Mon, 2014-04-21 06:47 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Thu, 2011-02-17 12:29 |
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4,187 |
by fukamitka Mon, 2014-04-21 06:47 |
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strange effect in: SymDock.linuxgccrelease by ast » Tue, 2013-06-11 11:05 |
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3,308 |
by ast Mon, 2014-04-21 06:48 |
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make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
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4,513 |
by smlewis Mon, 2014-04-21 06:47 |
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auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
3 |
3,539 |
by beowulfey Tue, 2015-06-23 16:10 |
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RosettaScripts filter BuriedUnsatHbonds2 missing still by zdaw » Fri, 2020-12-11 12:39 |
3 |
1,196 |
by zdaw Tue, 2020-12-15 15:38 |
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fragment_picker with fasta only by gw » Tue, 2011-11-15 13:20 |
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3,800 |
by gw Mon, 2014-04-21 06:47 |
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Modeling of side-chains onto membrane ab initio cluster? by akfried » Thu, 2011-06-23 04:03 |
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3,473 |
by nkemjika Mon, 2014-04-21 06:47 |
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remodel gives no output by coomteng@gmail.com » Tue, 2018-03-06 07:40 |
3 |
2,467 |
by rmoretti Wed, 2018-03-07 08:44 |
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using Rosetta to compute pH dependent binding? by JuliusSu » Sun, 2014-06-15 20:28 |
3 |
4,370 |
by rmoretti Tue, 2014-06-17 08:51 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
3 |
2,006 |
by smlewis Wed, 2018-12-12 16:51 |
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ligand_docking_error by Alison_Yajie » Mon, 2020-04-20 12:27 |
3 |
1,620 |
by YuFei Sat, 2020-05-30 00:12 |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
3,396 |
by xun Mon, 2014-04-21 06:47 |
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xyzVector error in Enzyme design by ajmbarbosa » Tue, 2016-01-05 09:46 |
3 |
3,601 |
by rmoretti Fri, 2016-06-17 10:36 |
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Using Rosetta Docking for nucleic acids by Adrien Guilhot » Thu, 2011-04-28 06:16 |
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4,480 |
by Adrien Guilhot Mon, 2014-04-21 06:47 |
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Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
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3,586 |
by rmoretti Wed, 2015-09-02 12:33 |
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RosettaCM input file for running on Stampede by smathersc » Wed, 2017-01-18 16:12 |
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2,605 |
by rmoretti Thu, 2017-02-02 09:02 |
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Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB by rlwoltz » Thu, 2019-01-24 19:43 |
3 |
3,063 |
by bjharris Sun, 2020-08-23 14:03 |
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DockingProtocol by Soler » Fri, 2022-02-11 00:12 |
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808 |
by gezmi Tue, 2022-02-15 21:47 |
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InterfaceAnalyzer problem by almeida » Mon, 2014-03-03 14:56 |
3 |
4,247 |
by smlewis Fri, 2014-03-07 14:09 |
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revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
3 |
3,517 |
by rmoretti Tue, 2016-07-12 09:30 |
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problem with fixed_membrane option of membrane abinitio by yescalona » Thu, 2013-01-17 15:42 |
3 |
3,050 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking membrane ions and water by jrcf » Tue, 2017-02-07 15:47 |
3 |
2,629 |
by smlewis Wed, 2017-02-15 07:43 |
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RosettaDock 4.0 ambiguous ERROR by sam_dc » Fri, 2022-03-18 09:36 |
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722 |
by rmoretti Tue, 2022-03-22 09:10 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
3 |
2,963 |
by brspurri Sat, 2017-08-26 07:08 |
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What is a rational minimal value for the "-nstruct" option by Sunyp_IM » Fri, 2020-05-22 01:28 |
3 |
1,502 |
by nannemdp Sun, 2020-05-24 14:46 |
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Running RosettaHoles2 by weehee » Wed, 2013-02-13 09:35 |
3 |
3,128 |
by weehee Mon, 2014-04-21 06:47 |
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analysis of clustering by loris.moretti » Thu, 2012-04-19 02:52 |
3 |
6,343 |
by rmoretti Mon, 2014-04-21 06:47 |
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ddg_monomer.mpi by gw » Thu, 2011-10-27 16:45 |
3 |
3,552 |
by smlewis Mon, 2014-04-21 06:47 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
3 |
1,462 |
by ctqwong Mon, 2020-07-27 01:48 |
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Problems with always_constrained_relax_script by wsgosal » Wed, 2013-05-29 04:39 |
3 |
4,211 |
by rmoretti Mon, 2014-04-21 06:47 |
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High energies after loopmodel run by michki » Thu, 2014-05-08 05:14 |
3 |
3,392 |
by rmoretti Mon, 2014-05-12 15:16 |
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issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
3 |
1,599 |
by He Xiao Sun, 2021-04-11 19:29 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
3 |
3,234 |
by rmoretti Tue, 2016-07-12 09:41 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
3 |
3,071 |
by lanselibai Tue, 2015-01-13 14:25 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
3 |
2,318 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"? by lanselibai » Fri, 2014-10-17 06:06 |
3 |
20,447 |
by rmoretti Fri, 2014-10-17 10:17 |
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parameterizing new residues by chiendarret » Fri, 2012-02-03 22:59 |
3 |
6,785 |
by rmoretti Mon, 2014-04-21 06:47 |
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partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
3 |
3,622 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
3 |
2,411 |
by smlewis Mon, 2017-01-23 06:26 |
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Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
3 |
2,322 |
by rmoretti Tue, 2017-08-22 09:03 |
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relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
3 |
1,577 |
by smlewis Thu, 2020-05-21 21:05 |
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Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
3 |
1,272 |
by vizcarra Thu, 2021-08-26 10:16 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
3 |
2,350 |
by rmoretti Mon, 2018-11-12 14:35 |
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