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Rosetta 3 - Applications

Topic / Topic starter Repliessort descending Views Last post
Normal topic partial ab initio modeling
by fred » Wed, 2011-08-17 14:14
3
3,209 by smlewis
Mon, 2014-04-21 06:47
Normal topic parameterizing new residues
by chiendarret » Fri, 2012-02-03 22:59
3
6,214 by rmoretti
Mon, 2014-04-21 06:47
Normal topic auto_setup_metals flag with loop modeling application fails
by beowulfey » Wed, 2015-06-10 07:44
3
3,103 by beowulfey
Tue, 2015-06-23 16:10
Normal topic RosettaScripts filter BuriedUnsatHbonds2 missing still
by zdaw » Fri, 2020-12-11 12:39
3
780 by zdaw
Tue, 2020-12-15 15:38
Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
1,972 by rmoretti
Wed, 2018-03-07 08:44
Normal topic assymetric dymer modelling with comparative and ab initio
by marcia » Mon, 2013-10-14 08:33
3
3,893 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Model truncated proteins
by BuddySphinx » Wed, 2018-12-12 10:32
3
1,580 by smlewis
Wed, 2018-12-12 16:51
Normal topic ligand_docking_error
by Alison_Yajie » Mon, 2020-04-20 12:27
3
1,194 by YuFei
Sat, 2020-05-30 00:12
Normal topic revert_design_to_native app comparison to FavorNativeResidue mover
by nwhoppe » Wed, 2016-06-29 14:35
3
3,092 by rmoretti
Tue, 2016-07-12 09:30
Normal topic clustering in RosettaRemodel
by cheyuk » Wed, 2014-04-23 03:09
3
3,105 by rmoretti
Mon, 2014-05-12 08:45
Normal topic xyzVector error in Enzyme design
by ajmbarbosa » Tue, 2016-01-05 09:46
3
3,131 by rmoretti
Fri, 2016-06-17 10:36
Normal topic Per residue scoring
by chelsell » Mon, 2015-08-17 14:43
3
3,135 by rmoretti
Wed, 2015-09-02 12:33
Normal topic RosettaCM input file for running on Stampede
by smathersc » Wed, 2017-01-18 16:12
3
2,237 by rmoretti
Thu, 2017-02-02 09:02
Normal topic Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB
by rlwoltz » Thu, 2019-01-24 19:43
3
2,405 by bjharris
Sun, 2020-08-23 14:03
Normal topic FlexPepDock for protein containing multiple chains
by Dimitrov » Mon, 2012-10-08 08:31
3
3,049 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking membrane ions and water
by jrcf » Tue, 2017-02-07 15:47
3
2,182 by smlewis
Wed, 2017-02-15 07:43
Normal topic Comparative modeling of metalloproteins
by ctqwong » Sun, 2020-07-12 13:51
3
1,047 by ctqwong
Mon, 2020-07-27 01:48
Normal topic Relax is resulting in a Segmentation Fault
by brspurri » Thu, 2017-08-24 18:46
3
2,431 by brspurri
Sat, 2017-08-26 07:08
Normal topic What is a rational minimal value for the "-nstruct" option
by Sunyp_IM » Fri, 2020-05-22 01:28
3
1,075 by nannemdp
Sun, 2020-05-24 14:46
Normal topic ddg monomer vs pmut scan
by dave » Tue, 2014-03-04 10:18
3
3,411 by smlewis
Fri, 2014-03-07 13:02
Normal topic error with fragment_picker.linuxgccrelease
by jiongzhang » Tue, 2012-04-17 09:07
3
2,668 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can only relax one structure at a time
by lah435 » Wed, 2012-12-12 01:55
3
3,048 by smlewis
Mon, 2014-04-21 06:47
Normal topic issues about cstfile in RosettaMatch
by Nicole Deng » Fri, 2020-12-18 05:44
3
974 by He Xiao
Sun, 2021-04-11 19:29
Normal topic score to use for picking top docking solutions?
by sudhar » Tue, 2011-06-14 06:47
3
4,530 by weitzner
Mon, 2014-04-21 06:47
Normal topic Loop design with length variation
by jarod » Thu, 2016-06-16 19:54
3
2,846 by rmoretti
Tue, 2016-07-12 09:41
Normal topic RosettaAntibody
by mpendleton » Mon, 2011-04-04 10:27
3
3,981 by jianqing
Mon, 2014-04-21 06:47
Normal topic Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease?
by lanselibai » Thu, 2015-01-08 03:23
3
2,694 by lanselibai
Tue, 2015-01-13 14:25
Normal topic Behavior of nstruct
by johnnytam100 » Wed, 2019-05-15 22:22
3
1,775 by johnnytam100
Tue, 2019-05-21 20:48
Normal topic What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"?
by lanselibai » Fri, 2014-10-17 06:06
3
20,045 by rmoretti
Fri, 2014-10-17 10:17
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
3
3,300 by matteoferla
Tue, 2018-10-30 02:54
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
2,055 by smlewis
Mon, 2017-01-23 06:26
Normal topic ERROR: no fragment to compute secondary structure
by byin » Sun, 2011-08-07 23:55
3
3,549 by smlewis
Mon, 2014-04-21 06:47
Normal topic Abrelax - Dunbrack02.lib.bin missing
by omirus » Sun, 2011-09-18 06:30
3
3,935 by smlewis
Mon, 2014-04-21 06:47
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
1,864 by rmoretti
Tue, 2017-08-22 09:03
Normal topic relax and movemap
by Alison_Yajie » Wed, 2020-05-20 21:27
3
1,128 by smlewis
Thu, 2020-05-21 21:05
Normal topic Rosetta Ligand Ensemble
by malfonsoprieto » Wed, 2021-05-26 10:21
3
608 by vizcarra
Thu, 2021-08-26 10:16
Normal topic loopmodel thinks there are no residues in the pose
by lah435 » Wed, 2013-03-27 02:46
3
3,355 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
2,185 by sn
Mon, 2017-03-06 10:03
Normal topic clean_pdb not working
by Andre Serobian » Thu, 2020-07-23 04:48
3
1,136 by rmoretti
Tue, 2020-07-28 08:24
Normal topic Residue_energy_breakdown utility
by cn » Sat, 2012-03-17 06:11
3
2,740 by cn
Mon, 2014-04-21 06:47
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
1,952 by rmoretti
Mon, 2018-11-12 14:35
Normal topic RNA modeling with step wise Monte Carlo error
by szcshr123 » Mon, 2020-12-07 18:08
3
787 by everyday847
Wed, 2020-12-09 21:46
Normal topic Discrepancy between the total pose energy and sum of per residue energies
by vijayan » Tue, 2013-07-02 07:24
3
3,552 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Homology Modelling with cofactors
by Derek Smith » Thu, 2015-07-09 08:24
3
3,370 by Derek Smith
Wed, 2016-02-03 05:47
Normal topic how to make "static" built binaries use multiple cpus like "mpi"?
by Danielsebas » Wed, 2019-09-18 06:41
3
1,393 by rmoretti
Wed, 2019-09-18 10:21
Normal topic Loop prediction
by yzhou » Thu, 2013-07-18 14:24
3
3,385 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Can't append or prepend with pepspec
by danzinho » Tue, 2015-03-31 01:19
3
2,900 by dswhit
Tue, 2015-04-21 10:14
Normal topic Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM
by ajkal » Fri, 2017-04-14 08:44
3
2,451 by rmoretti
Thu, 2017-04-20 13:59
Normal topic strange effect in: SymDock.linuxgccrelease
by ast » Tue, 2013-06-11 11:05
3
2,970 by ast
Mon, 2014-04-21 06:48
Normal topic ab initio
by malkeet.singh » Thu, 2018-05-10 05:34
3
2,288 by malkeet.singh
Mon, 2018-05-21 04:26
Normal topic Docking to TM protein plus lipid bilayer
by renedominik » Tue, 2019-03-12 06:58
3
1,858 by renedominik
Tue, 2020-02-18 01:36
Normal topic  The error of InterfaceAnalyzer
by asbelx » Thu, 2017-12-21 19:04
3
2,586 by smlewis
Sat, 2017-12-23 15:56
Normal topic folding ectodomain in membrane ab initio
by freedman » Mon, 2015-05-25 21:09
3
2,918 by rmoretti
Fri, 2015-06-19 13:53
Normal topic using Rosetta to compute pH dependent binding?
by JuliusSu » Sun, 2014-06-15 20:28
3
3,579 by rmoretti
Tue, 2014-06-17 08:51
Normal topic InterfaceAnalyzer problem
by almeida » Mon, 2014-03-03 14:56
3
3,784 by smlewis
Fri, 2014-03-07 14:09
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
3
2,325 by rmoretti
Fri, 2018-11-23 11:23
Normal topic How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI
by kingljy » Sun, 2017-09-24 18:37
3
2,384 by rmoretti
Tue, 2017-10-10 09:58
Normal topic "Install_dependencies.pl" gives "Aborted" when downloading "nr" database?
by Danielsebas » Sat, 2019-09-14 08:53
3
1,155 by danpf
Mon, 2019-09-16 09:51
Normal topic FlexPepDocking with GDP-bound protein
by LI » Sun, 2011-06-12 20:02
3
3,756 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Lammps or RosettaSurface
by StevPChem » Fri, 2016-06-10 10:13
3
2,889 by Anpu
Tue, 2018-09-25 18:53
Normal topic problem with fixed_membrane option of membrane abinitio
by yescalona » Thu, 2013-01-17 15:42
3
2,718 by smlewis
Mon, 2014-04-21 06:47
Normal topic Syntax for the alignment file in "minirosetta comparative modeling"
by lanselibai » Thu, 2014-10-16 15:29
3
3,548 by lanselibai
Thu, 2014-10-23 03:26
Normal topic Constraints in RosettaCM
by kbuhr » Fri, 2015-07-31 06:55
3
3,155 by kbuhr
Mon, 2016-03-28 01:08
Normal topic Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex
by benhardy » Mon, 2020-06-15 09:33
3
1,016 by benhardy
Fri, 2020-06-19 07:55
Normal topic Does it make sense if I do backrub after sequence design?
by johnnytam100 » Thu, 2019-08-15 05:15
3
1,289 by johnnytam100
Fri, 2019-08-16 00:20
Normal topic RosettaCM or FastRelax?
by Tianyang89 » Wed, 2020-09-23 07:46
3
966 by danpf
Thu, 2020-09-24 13:44
Normal topic scoring input pdbs as the same as docking score
by hamedkhakzad » Fri, 2016-07-01 07:15
3
2,607 by rmoretti
Tue, 2016-07-12 09:05
Normal topic KIC with fragments versus Next generation KIC
by Loki01 » Fri, 2018-09-07 05:06
3
1,884 by smlewis
Mon, 2018-09-10 11:48
Normal topic Transmembrane helix fold-and-dock?
by sarah_b » Tue, 2020-05-12 02:09
3
1,171 by jkleman
Tue, 2020-05-19 15:02
Normal topic Problems with always_constrained_relax_script
by wsgosal » Wed, 2013-05-29 04:39
3
3,825 by rmoretti
Mon, 2014-04-21 06:47
Normal topic High energies after loopmodel run
by michki » Thu, 2014-05-08 05:14
3
3,001 by rmoretti
Mon, 2014-05-12 15:16
Normal topic Missing CS-HM-Rosetta Binary files
by Marius1987 » Wed, 2016-02-10 05:52
3
2,941 by Marius1987
Mon, 2016-03-14 04:34
Normal topic Threading a sequence onto a template with ligands/metal ions included
by ajkal » Wed, 2017-04-19 11:53
3
2,467 by ahmadkhalifa
Sun, 2019-03-31 23:27
Normal topic Running RosettaHoles2
by weehee » Wed, 2013-02-13 09:35
3
2,735 by weehee
Mon, 2014-04-21 06:47
Normal topic relax with resfile
by gw » Fri, 2011-08-05 10:57
3
4,835 by nannemdp
Mon, 2014-04-21 06:47
Normal topic Rosetta make_fragments.pl error?
by Danielsebas » Mon, 2019-09-02 07:51
3
1,326 by Danielsebas
Thu, 2019-09-05 03:35
Normal topic Problem with symmetric docking
by saxen » Fri, 2011-04-29 15:15
3
3,136 by smlewis
Mon, 2014-04-21 06:47
Normal topic De novo model-building guided by exprimental density data
by dee2711453 » Thu, 2016-03-10 17:28
3
2,534 by dee2711453
Fri, 2016-03-11 21:32
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
2,046 by rmoretti
Thu, 2018-06-28 12:58
Normal topic mr_protocols with symmetry and ligand
by jhm13c » Mon, 2017-02-27 11:59
4
2,483 by jhm13c
Thu, 2017-03-02 12:01
Normal topic fa_plane enregy term in scoring weights
by ytao » Fri, 2012-11-30 20:25
4
3,756 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax with protein+complex
by Prasanth Kumar » Wed, 2013-05-08 23:16
4
4,257 by Prasanth Kumar
Mon, 2014-04-21 06:47
Normal topic When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error
by Martin Floor » Thu, 2020-09-17 06:01
4
1,169 by Martin Floor
Tue, 2020-09-22 00:48
Normal topic Error while running RosettaLigand
by Ryhon Wang » Tue, 2013-07-30 02:51
4
4,052 by Ryhon Wang
Mon, 2014-04-21 06:48
Normal topic Backrub Params Files
by protos_heis » Tue, 2012-09-18 06:15
4
3,990 by protos_heis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer: what is the meaning of "total score" and "score"?
by lanselibai » Tue, 2015-01-13 14:49
4
5,269 by rmoretti
Thu, 2015-04-16 11:23
Normal topic RosettaAntibody3 is failing with "Error: no input sequences were specified!"
by brspurri » Sun, 2020-08-16 16:16
4
1,258 by brspurri
Tue, 2020-08-18 09:57
Normal topic side chain repacking error
by malkeet.singh » Thu, 2017-12-07 04:49
4
2,517 by smlewis
Wed, 2017-12-13 09:54
Normal topic Any backrub expert?
by johnnytam100 » Fri, 2019-03-01 01:58
4
2,056 by johnnytam100
Sun, 2019-03-03 23:42
Normal topic Rosetta antibody- modeling in the presense of an antigen
by agctomer » Mon, 2021-02-01 03:19
4
800 by nannemdp
Wed, 2021-02-03 08:52
Normal topic ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used?
by lanselibai » Tue, 2015-02-24 02:38
4
4,845 by lanselibai
Sun, 2015-03-01 15:00
Normal topic How to run simulations with non-canonical amino acids?
by Denise » Thu, 2017-06-08 07:50
4
2,742 by Denise
Thu, 2017-06-15 04:26
Normal topic How to output all iteration structures from ddg_monomer?
by cossio » Fri, 2014-12-26 13:40
4
3,609 by cossio
Mon, 2015-01-19 07:10
Normal topic null mutation with ddg_monomer
by fred » Fri, 2012-05-11 07:16
4
3,085 by fred
Mon, 2014-04-21 06:47
Normal topic RosettaCM: An internal error has occurred when "Running the Hybridize mover"
by haom » Mon, 2020-06-15 05:56
4
1,100 by haom
Tue, 2020-06-16 05:55
Normal topic Structure prediction using true distance and angle constraint
by maruhuang » Wed, 2019-08-21 02:29
4
1,340 by maruhuang
Thu, 2019-09-26 18:52
Normal topic Filter for fixed-bb design using RosettaScript?
by chrisHKL » Fri, 2020-02-28 19:47
4
1,236 by vmulligan
Mon, 2020-03-02 13:40
Normal topic Can I assume the outputs from different runs are from a same batch?
by lanselibai » Mon, 2014-11-03 06:34
4
3,400 by lanselibai
Mon, 2014-11-03 13:15
Normal topic antibody.linuxgccrelease- output models don't have the same sequence as the input fasta
by agctomer » Thu, 2021-01-21 15:35
4
864 by agctomer
Sun, 2021-01-31 01:06
Normal topic fixbb and ncaa's
by jarek » Thu, 2012-11-08 04:55
4
3,581 by jcminerlanl
Thu, 2017-12-21 10:13
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