You are here
Rosetta 3 - General
Log in to post new content in the forum.
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
use_truncated_termini not working in combination with params files by georg » Thu, 2020-03-26 13:14 |
1 |
1,039 |
by matteoferla Tue, 2020-04-14 03:36 |
|
|
Non-ideal residue detected by cnelson » Thu, 2010-07-01 12:20 |
1 |
1,960 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Error in RMSD calculation when native sequence deviates by abdullah » Tue, 2009-11-10 08:56 |
1 |
2,314 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
AbinitioRelax of RCSB PDB structures by ac.research » Tue, 2019-09-03 02:35 |
1 |
1,207 |
by danpf Tue, 2019-09-03 10:39 |
|
|
connecting pdb files by Hyun » Wed, 2021-11-17 22:32 |
1 |
594 |
by ajasja Thu, 2021-11-18 00:33 |
|
|
no template pdb provided for alignment by HZHANG020 » Sat, 2014-06-14 06:27 |
1 |
2,295 |
by rmoretti Mon, 2014-06-16 08:23 |
|
|
Could the Relax step be used separately ? （solved） by wszjzhang » Tue, 2010-03-30 15:00 |
1 |
1,849 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
general question about protein docking by albumns » Mon, 2010-12-13 23:26 |
1 |
2,205 |
by JeffreyGray Mon, 2014-04-21 06:47 |
|
|
Model Extraction by mdweirna » Tue, 2010-04-13 15:28 |
1 |
1,728 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Error during docking with proteins containing norleucine by aaj » Mon, 2016-04-25 15:04 |
1 |
1,543 |
by rmoretti Thu, 2016-04-28 14:47 |
|
|
Scoring in Rosetta by Elijah_Hix » Wed, 2021-07-14 06:48 |
1 |
805 |
by rmoretti Wed, 2021-07-14 07:07 |
|
|
core.pack.rotamer_set.RotamerSet_: (0) Using simple Rotamer generation logic for pdb_NAP by to-qinbin@163.com » Wed, 2022-09-14 06:06 |
1 |
221 |
by rmoretti Wed, 2022-09-14 09:14 |
|
|
About Rosetta Scoring Function by wszjzhang » Wed, 2010-02-03 09:22 |
1 |
2,140 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Divide larger low-res. global run into several smaller runs? by jasnyderjr » Mon, 2015-12-21 17:41 |
1 |
1,693 |
by smlewis Tue, 2015-12-22 08:31 |
|
|
ERROR: FragmentIO: could not open file by ahmadkhalifa » Wed, 2018-01-31 13:30 |
1 |
1,945 |
by rmoretti Wed, 2018-01-31 14:57 |
|
|
idealization error by albumns » Mon, 2011-02-07 01:28 |
1 |
1,866 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
error in ligand docking by rohi » Fri, 2020-11-13 10:52 |
1 |
1,393 |
by rmoretti Fri, 2020-11-13 12:58 |
|
|
Parallel Installation of ROSETTA3.1 by anirbanzz » Mon, 2009-12-07 21:09 |
1 |
1,890 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Rosetta Holes and Packstat scoring by nick.polizzi » Fri, 2013-08-02 09:06 |
1 |
3,398 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Cluster decoys after running PlexPepDock by phanvy » Thu, 2014-06-19 06:03 |
1 |
1,894 |
by nawsad Fri, 2014-06-20 02:48 |
|
|
Difficulties with Protein Docking using Harmonic Restraints by Parker.deWaal » Fri, 2016-08-19 11:23 |
1 |
1,528 |
by smlewis Mon, 2016-08-22 10:39 |
|
|
Rosetta Antibody: Unable to open file and terminates by denatured » Thu, 2019-12-12 11:26 |
1 |
1,909 |
by denatured Fri, 2019-12-13 11:19 |
|
|
contribution of interface residues in binding energy by rohi » Wed, 2021-01-20 07:33 |
1 |
869 |
by rmoretti Wed, 2021-01-20 07:39 |
|
|
Inconsistent scoring by "aa_composition" term by chenna » Thu, 2022-02-24 03:00 |
1 |
530 |
by vmulligan Thu, 2022-03-03 18:48 |
|
|
ERROR: Unable to open weights. by libai2098 » Thu, 2010-12-30 17:54 |
1 |
1,893 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Rosetta 3.1 seg faults gcc while compiling on Fedora 11 by jtmacd » Fri, 2009-10-02 05:26 |
1 |
2,026 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
RosettaDesign Server, reproducing optimized interface conformation by AlexanderMetz » Thu, 2012-02-09 10:41 |
1 |
3,061 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to insert a TER line between docking partners by devroop » Sun, 2012-07-29 13:48 |
1 |
2,920 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Custom fold tree by lah435 » Tue, 2015-03-03 12:02 |
1 |
1,756 |
by rmoretti Mon, 2015-03-30 16:38 |
|
|
ssDNA (aptamer)/protein docking by JulienO » Fri, 2016-05-27 02:25 |
1 |
1,976 |
by rmoretti Tue, 2016-07-12 08:47 |
|
|
Docking a ligand to two movable domains of a protein by brspurri » Wed, 2018-05-16 08:27 |
1 |
1,235 |
by rmoretti Thu, 2018-06-28 14:22 |
|
|
MakeRotLib by yinasun » Sun, 2019-07-28 20:08 |
1 |
1,213 |
by rmoretti Mon, 2019-08-26 15:00 |
|
|
running Rosetta with MPI by rohi » Sat, 2020-09-05 16:06 |
1 |
1,183 |
by rmoretti Tue, 2021-02-09 13:44 |
|
|
Explicit water by tsztain » Wed, 2021-08-25 05:54 |
1 |
865 |
by matteoferla Thu, 2021-09-02 03:50 |
|
|
Bug in cluster? by nitroamos » Mon, 2011-11-21 12:53 |
1 |
2,006 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Get nchi for heavy atoms by pachecoj » Tue, 2014-11-04 19:04 |
1 |
1,849 |
by rmoretti Tue, 2014-11-11 13:22 |
|
|
Error message: ArchiveManager spinning down by Lati » Sun, 2016-01-24 02:42 |
1 |
2,081 |
by smlewis Sun, 2016-01-24 03:24 |
|
|
Robetta nstruct number by ac.research » Tue, 2017-01-31 14:27 |
1 |
1,521 |
by rmoretti Thu, 2017-02-02 08:52 |
|
|
Speeding up FastDesign by ebetica0 » Wed, 2021-04-28 13:08 |
1 |
997 |
by vmulligan Wed, 2021-04-28 14:20 |
|
|
snugdock and rosetta 3.2?? by sudhar » Thu, 2011-02-24 00:36 |
1 |
1,958 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
extract 10001+ pdbs by viochemist » Thu, 2010-07-29 16:25 |
1 |
1,672 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Possible documentation error by imurch » Tue, 2012-04-17 00:11 |
1 |
2,159 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
rosettautil module not imported cleanly by python scripts by franfdez » Tue, 2013-08-27 01:25 |
1 |
2,725 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Evaluate Docking Result by byin » Thu, 2014-07-03 11:31 |
1 |
2,249 |
by rmoretti Wed, 2014-07-16 08:07 |
|
|
known disulfides in Remodel sequence by matteoferla » Mon, 2018-09-10 06:43 |
1 |
1,422 |
by matteoferla Thu, 2018-09-13 06:21 |
|
|
build rosetta by cross-platform compiler by jarod » Fri, 2010-05-07 21:49 |
1 |
1,743 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
replace a short helix by berk » Wed, 2013-06-05 10:19 |
1 |
1,729 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Docking with glutathione by phanvy » Wed, 2015-04-29 22:25 |
1 |
1,737 |
by rmoretti Thu, 2015-04-30 07:13 |
|
|
Enumeration of Amino Acid identities by achambe » Wed, 2016-06-15 15:28 |
1 |
1,561 |
by rmoretti Wed, 2016-06-15 16:06 |
|
|
Running Backrub by enoee » Wed, 2010-10-27 07:51 |
1 |
1,935 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
energy units by jtmacd » Mon, 2009-07-06 10:39 |
1 |
3,404 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ab initio folding part of a protein by attesor » Wed, 2013-03-06 04:39 |
1 |
1,964 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
rosetta nonlocal application by mintseris » Tue, 2013-12-31 13:13 |
1 |
1,980 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Looking for collaboration. by ac.research » Mon, 2017-03-06 04:54 |
1 |
1,512 |
by rmoretti Mon, 2017-03-06 08:37 |
|
|
partial charge of params file in ligand docking by rohi » Fri, 2021-05-28 08:43 |
1 |
930 |
by rmoretti Fri, 2021-05-28 08:54 |
|
|
how to add constrains in flexible peptide docking by kingbo2008 » Fri, 2011-04-29 07:55 |
1 |
2,105 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
RMS in Score Application by brspurri » Thu, 2011-12-29 09:19 |
1 |
3,751 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Using logic in resfile, Rosetta Scripts by tsztain » Wed, 2017-03-22 13:50 |
1 |
1,472 |
by smlewis Wed, 2017-03-22 14:02 |
|
|
Modeling transmembrane and intracellular domain by Sunyp_IM » Sun, 2018-04-08 06:44 |
1 |
1,359 |
by jkleman Sat, 2018-04-14 10:55 |
|
|
The question about FavorNativeResidue by asbelx » Fri, 2019-04-12 20:02 |
1 |
1,377 |
by rmoretti Tue, 2019-07-09 15:57 |
|
|
Unrecognized D-Leu name / C-terminal ACE by almeida85 » Thu, 2022-08-11 07:43 |
1 |
283 |
by almeida85 Fri, 2022-08-12 05:56 |
|
|
docking using rosetta3.1 and rosetta2.3 leads to very different results by lqzhang » Thu, 2010-01-14 11:54 |
1 |
1,849 |
by sid Mon, 2014-04-21 06:47 |
|
|
model protein at low pH by ytao » Mon, 2012-11-05 07:52 |
1 |
2,589 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Atom_.cc line 304 by fred » Thu, 2014-09-11 12:04 |
1 |
1,853 |
by rmoretti Fri, 2014-09-12 09:11 |
|
|
What is "repack", "prepack"? by cossio » Wed, 2015-11-04 17:59 |
1 |
5,197 |
by rmoretti Tue, 2015-11-10 11:52 |
|
|
"abinitio" with mpi by al614 » Wed, 2016-10-12 12:17 |
1 |
1,980 |
by rmoretti Fri, 2016-10-14 15:46 |
|
|
Rosetta changing Atom Name in PDB ATOM record? by chrisHKL » Tue, 2020-03-03 20:50 |
1 |
1,116 |
by smlewis Wed, 2020-03-04 07:40 |
|
|
Snugdock and antibody modelling by sudhar » Thu, 2010-06-10 08:13 |
1 |
2,216 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
how same random seeds can be used in rosetta for mpi run. by exchhattu » Wed, 2009-10-28 22:09 |
1 |
2,409 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Adding NCAA with Metal Ion by MustafaBughio » Mon, 2022-11-28 15:07 |
1 |
341 |
by JasonIsaac Mon, 2022-12-05 18:41 |
|
|
angle constraints by gw » Tue, 2011-07-19 07:49 |
1 |
2,183 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Docking individual residue ussing RosettaDock by a-eatemadi@razi... » Wed, 2017-09-06 05:50 |
1 |
1,404 |
by rmoretti Wed, 2017-09-06 08:47 |
|
|
Rosetta groups in Scandinavia by knutjbj » Mon, 2010-11-15 23:50 |
1 |
2,024 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Building Rosetta Problem: Processor architecture unsupported? by jalfaro » Tue, 2010-03-23 05:48 |
1 |
2,662 |
by reddybg Mon, 2014-04-21 06:47 |
|
|
Read svn acces or acces to developmen version of rosetta by knutjbj » Thu, 2010-12-09 17:06 |
1 |
2,147 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to site the scoring application in rosetta3.1? by doranhen » Thu, 2012-07-05 10:07 |
1 |
2,185 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
fragment_picker error secondarysimilarity.cc line:132 by leanawen » Mon, 2013-04-15 14:33 |
1 |
1,837 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Is there a way to calculate chi1 and chi1+chi differences between two structures? by sn » Thu, 2017-04-20 21:46 |
1 |
1,744 |
by rmoretti Fri, 2017-04-21 07:52 |
|
|
Sequence symmetry during FastDesign for repeat protein design by cttm4a1 » Tue, 2022-09-06 21:02 |
1 |
240 |
by rmoretti Wed, 2022-09-07 09:19 |
|
|
Parallel computing? by mansi » Thu, 2010-08-19 08:39 |
1 |
1,999 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Structure prediction based on template -> Documentation comparative modeling of protein structures by maxebert » Sun, 2011-03-20 01:15 |
1 |
2,916 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
tyrosine structure error by dave » Mon, 2012-04-30 04:38 |
1 |
1,923 |
by frichter Mon, 2014-04-21 06:47 |
|
|
Reproducing Robetta AB initio setup by jason-rosetta » Sat, 2014-10-04 04:26 |
1 |
2,011 |
by jadolfbr Fri, 2014-10-31 08:55 |
|
|
Structure refinement with RDC constraint by shushunur » Thu, 2018-01-18 00:44 |
1 |
1,880 |
by rmoretti Tue, 2018-01-30 09:08 |
|
|
Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1" by Xinhang » Sat, 2020-04-11 14:30 |
1 |
1,234 |
by vmulligan Sat, 2020-04-11 17:40 |
|
|
I Need Help on Validation for a Ligand Docking Experiment. by tbelec » Sat, 2021-03-20 13:27 |
1 |
1,006 |
by matteoferla Mon, 2021-03-22 08:29 |
|
|
How to get fragment library from robetta server for mre than 1000 residue sequence? by Danielsebas » Wed, 2019-09-18 07:53 |
1 |
1,168 |
by rmoretti Wed, 2019-09-18 10:49 |
|
|
protein design for increasing its affinity towards ligand by rohi » Fri, 2020-10-30 11:33 |
1 |
996 |
by rmoretti Tue, 2021-02-09 12:25 |
|
|
Multi-metric enzyme docking with substrate by Wang Zhe » Sat, 2021-11-20 04:41 |
1 |
693 |
by matteoferla Mon, 2021-12-13 02:27 |
|
|
Structure Prediction of protein mutant using relax by Delfosse57 » Tue, 2023-01-10 13:26 |
1 |
145 |
by JW_24 Tue, 2023-01-24 04:55 |
|
|
error in cluster running by albumns » Mon, 2011-09-05 00:24 |
1 |
2,287 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Error in Running Symmetry Docking cutpoint. by Jacob » Wed, 2011-06-01 08:21 |
1 |
2,060 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Difference between checkpoint file and PSSM for making fragments by qlj » Fri, 2014-03-21 22:00 |
1 |
4,339 |
by rmoretti Sat, 2014-03-22 11:40 |
|
|
ligand flexibility by dave » Thu, 2015-02-12 08:48 |
1 |
1,879 |
by rmoretti Wed, 2015-02-18 09:17 |
|
|
Problem with match on enzdes by ahuls1 » Thu, 2021-07-29 13:21 |
1 |
797 |
by ahuls1 Thu, 2021-07-29 13:23 |
|
|
Problem with run_lips.pl script by wdyrka » Tue, 2010-09-07 11:07 |
1 |
2,045 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Compilation error by zgcarvalho » Fri, 2010-02-12 06:58 |
1 |
1,747 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Knowledge check on steric effects by pachecoj » Thu, 2014-10-16 09:13 |
1 |
2,067 |
by rmoretti Thu, 2014-10-16 10:33 |
|
|
I've got two doubts by jrcf » Sun, 2016-01-10 07:45 |
1 |
1,680 |
by smlewis Sun, 2016-01-10 10:02 |
|
|
Sequence Profile/Checkpoint file by ojmel » Fri, 2021-04-02 17:29 |
1 |
905 |
by taylorjones Mon, 2021-04-05 13:17 |
Log in to post new content in the forum.
