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Rosetta 3 - Applications
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not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
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678 |
by xinmiaohe Mon, 2020-10-19 13:18 |
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Scoring functions: talaris2013 incompatible versions by Smbat » Tue, 2020-10-13 06:18 |
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1,097 |
by Astghik Thu, 2020-10-15 00:48 |
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neutral N-term and C-term by nawsad » Sun, 2013-06-09 10:20 |
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6,560 |
by helenah Thu, 2020-10-08 05:29 |
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Modelling of multi-component symmetrical structures by LanMei » Wed, 2020-10-07 09:58 |
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383 |
by LanMei Wed, 2020-10-07 09:58 |
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minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion by Kharlamov1317a » Mon, 2020-09-21 08:46 |
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652 |
by Kharlamov1317a Wed, 2020-10-07 08:26 |
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Robetta ab initio - TrRosetta for membrane proteins by benhardy » Wed, 2020-09-30 08:42 |
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637 |
by benhardy Wed, 2020-09-30 08:42 |
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Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
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1,086 |
by benhardy Wed, 2020-09-30 04:24 |
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Input structure by Soler » Mon, 2020-09-28 13:18 |
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420 |
by ssrb Tue, 2020-09-29 12:37 |
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NCAA Rotamers for Cyclosporin by marinok » Mon, 2020-09-28 14:11 |
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394 |
by marinok Mon, 2020-09-28 14:11 |
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Trouble running MPI docking protocol, please help! by Rob_Barringer » Tue, 2020-08-18 06:40 |
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922 |
by Rob_Barringer Fri, 2020-09-25 05:45 |
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RosettaCM or FastRelax? by Tianyang89 » Wed, 2020-09-23 07:46 |
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794 |
by danpf Thu, 2020-09-24 13:44 |
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Sequence design with mixed fixbb-relax protocol by kszczepaniak » Thu, 2013-10-03 08:11 |
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4,104 |
by fede Wed, 2020-09-23 11:24 |
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I need some help for using pHDock applications(histidine protonation / pH-dependent binding) by leygkn » Tue, 2020-09-22 18:40 |
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433 |
by leygkn Tue, 2020-09-22 22:46 |
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When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
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975 |
by Martin Floor Tue, 2020-09-22 00:48 |
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Strong bias in sampling observed in RosettaDock by chenna » Thu, 2020-08-27 22:23 |
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517 |
by ssrb Sun, 2020-09-20 15:50 |
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Building loop extensions in a membrane protein with Remodel by benhardy » Tue, 2020-06-02 08:21 |
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944 |
by benhardy Sun, 2020-09-20 11:15 |
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Pepspec Anchor Dock by Soler » Fri, 2020-09-18 08:09 |
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425 |
by Soler Fri, 2020-09-18 08:09 |
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FASTA for Octopus by Smbat » Wed, 2020-09-16 05:40 |
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581 |
by rmoretti Wed, 2020-09-16 22:11 |
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Pepspec Anchor Dock by Soler » Wed, 2020-09-16 19:08 |
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286 |
by Soler Wed, 2020-09-16 19:08 |
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FlexPepDocking by jlawrie » Tue, 2020-09-15 12:52 |
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335 |
by jlawrie Tue, 2020-09-15 12:52 |
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'standard.wts' does not exist by almeida85 » Mon, 2020-09-14 02:26 |
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446 |
by rmoretti Mon, 2020-09-14 06:36 |
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Scoring docking error by almeida85 » Wed, 2020-09-02 01:32 |
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674 |
by almeida85 Wed, 2020-09-02 06:14 |
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make_fragments.pl error by almeida85 » Mon, 2020-08-31 04:39 |
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731 |
by almeida85 Tue, 2020-09-01 01:29 |
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Extracting top score PIPER models by almeida85 » Mon, 2020-08-31 07:17 |
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364 |
by almeida85 Mon, 2020-08-31 07:17 |
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density scoring by Tianyang89 » Sat, 2020-08-29 04:54 |
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592 |
by danpf Sun, 2020-08-30 22:23 |
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RosettaAntibody3 - How can I model an extended H3? by brspurri » Fri, 2020-08-28 09:11 |
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363 |
by brspurri Fri, 2020-08-28 09:11 |
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Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB by rlwoltz » Thu, 2019-01-24 19:43 |
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2,105 |
by bjharris Sun, 2020-08-23 14:03 |
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Global Docking with carbohydrates by ChiauShu » Sat, 2020-08-22 20:16 |
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318 |
by ChiauShu Sat, 2020-08-22 20:16 |
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Successful RosettaCM? by jlawrie » Wed, 2020-08-19 06:53 |
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651 |
by jlawrie Thu, 2020-08-20 11:00 |
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Fewer than expected structures in clustering output by fabiotrovato » Thu, 2020-08-20 00:59 |
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314 |
by fabiotrovato Thu, 2020-08-20 00:59 |
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RosettaAntibody3 is failing with "Error: no input sequences were specified!" by brspurri » Sun, 2020-08-16 16:16 |
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1,042 |
by brspurri Tue, 2020-08-18 09:57 |
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clustering output file has few structures by fabiotrovato » Mon, 2020-08-17 11:37 |
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298 |
by fabiotrovato Mon, 2020-08-17 11:37 |
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RosettaCM by jlawrie » Fri, 2020-08-14 14:09 |
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558 |
by jlawrie Fri, 2020-08-14 14:09 |
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mpirun docking_protocol by NanB » Mon, 2020-08-03 11:38 |
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897 |
by ssrb Fri, 2020-08-14 09:18 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
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658 |
by jlawrie Wed, 2020-08-12 08:57 |
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Homology Modeling-no PDB output by jlawrie » Wed, 2020-08-12 06:30 |
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680 |
by jlawrie Wed, 2020-08-12 08:56 |
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Modeling-Using RosettaCM by jlawrie » Wed, 2020-08-12 08:46 |
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414 |
by jlawrie Wed, 2020-08-12 08:47 |
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Docking-RMS value nan by jlawrie » Wed, 2020-08-12 07:03 |
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616 |
by jlawrie Wed, 2020-08-12 07:27 |
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Error when trying docking protocol with different ligand by scyphs » Wed, 2020-08-05 04:37 |
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618 |
by scyphs Mon, 2020-08-10 08:09 |
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how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
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596 |
by qq7678500549 Sun, 2020-08-09 18:59 |
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De novo water predictions using SPaDES by MNP1986 » Mon, 2019-03-25 07:53 |
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894 |
by matteoferla Tue, 2020-08-04 09:30 |
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Bug Report - Encoding issue by daniloboskovic » Tue, 2020-08-04 07:02 |
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268 |
by daniloboskovic Tue, 2020-08-04 07:02 |
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pepspec anchor dock by Andre Serobian » Tue, 2020-07-28 05:51 |
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488 |
by Andre Serobian Tue, 2020-07-28 23:26 |
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Zero residues error in docking by cjy318 » Tue, 2020-07-28 19:47 |
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370 |
by cjy318 Tue, 2020-07-28 19:47 |
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RosettaAntibody3 core.pose.util error by linhhoang157 » Tue, 2020-07-28 12:40 |
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421 |
by linhhoang157 Tue, 2020-07-28 12:40 |
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clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
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963 |
by rmoretti Tue, 2020-07-28 08:24 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
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874 |
by ctqwong Mon, 2020-07-27 01:48 |
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How to choose designed antibody by Sunyp_IM » Wed, 2020-06-24 10:06 |
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1,238 |
by jadolfbr Fri, 2020-07-24 07:24 |
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How many iterations of remodel is enough? by daniloboskovic » Thu, 2020-07-16 08:07 |
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319 |
by daniloboskovic Thu, 2020-07-16 08:14 |
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Translate mover chain X doesnot exist. by surya » Thu, 2020-07-09 08:36 |
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1,394 |
by rmoretti Tue, 2020-07-14 10:54 |
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Warning: Fold tree is not set properly for density scoring by ahansel » Mon, 2020-07-13 10:50 |
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527 |
by danpf Tue, 2020-07-14 10:27 |
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Problem with mpirun/mpiexec by ahansel » Fri, 2020-07-10 08:37 |
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1,266 |
by rmoretti Fri, 2020-07-10 09:59 |
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Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
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1,238 |
by Sunyp_IM Thu, 2020-07-09 18:40 |
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Metal Ion in symmetric design by tschiex » Wed, 2020-07-08 05:28 |
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342 |
by tschiex Wed, 2020-07-08 05:28 |
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PEPSPEC by Neeraj » Wed, 2018-01-03 02:24 |
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967 |
by Andre Serobian Wed, 2020-07-08 04:44 |
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Does antibody_numbering_converter support camelid antibody? by mxp » Tue, 2020-07-07 01:21 |
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334 |
by mxp Tue, 2020-07-07 01:21 |
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zero standard deviation of I_sc in protein-protein docking by rohi » Fri, 2020-07-03 22:19 |
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324 |
by rohi Fri, 2020-07-03 22:20 |
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OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
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772 |
by bjharris Thu, 2020-07-02 11:09 |
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LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
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638 |
by matteoferla Thu, 2020-07-02 07:27 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-07-02 07:05 |
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342 |
by Alison_Yajie Thu, 2020-07-02 07:10 |
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kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
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723 |
by bjharris Wed, 2020-07-01 23:25 |
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Scoring after HBNet by HHL_SIUC » Wed, 2020-07-01 10:49 |
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329 |
by HHL_SIUC Wed, 2020-07-01 10:49 |
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Noncanonical amino acids by wsgosal » Tue, 2014-03-18 05:29 |
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4,165 |
by Nolanm15 Tue, 2020-06-30 08:43 |
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"core.kinematics.FoldTree" error upon running RAbD by Sunyp_IM » Fri, 2020-06-26 17:27 |
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731 |
by Sunyp_IM Fri, 2020-06-26 20:57 |
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ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
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722 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
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Ligand docking with constraint by Alison_Yajie » Wed, 2020-06-24 12:34 |
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336 |
by Alison_Yajie Wed, 2020-06-24 12:34 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
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737 |
by Kotimedidhi Mon, 2020-06-22 16:19 |
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How to select docked models by Sunyp_IM » Mon, 2020-06-22 00:50 |
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457 |
by ssrb Mon, 2020-06-22 13:12 |
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Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex by benhardy » Mon, 2020-06-15 09:33 |
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876 |
by benhardy Fri, 2020-06-19 07:55 |
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Residue selector by Alison_Yajie » Wed, 2020-06-17 19:57 |
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352 |
by Alison_Yajie Thu, 2020-06-18 09:47 |
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Constraint generator by Alison_Yajie » Wed, 2020-06-17 20:14 |
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505 |
by Alison_Yajie Wed, 2020-06-17 20:35 |
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metalloprotein ab initio with glutamic acid by inorgchem » Tue, 2020-06-16 20:45 |
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282 |
by inorgchem Tue, 2020-06-16 20:45 |
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RosettaCM: An internal error has occurred when "Running the Hybridize mover" by haom » Mon, 2020-06-15 05:56 |
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926 |
by haom Tue, 2020-06-16 05:55 |
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The difference between the H1 regions of modeled camelid antibody and the crystal structure. by Sunyp_IM » Sun, 2020-06-07 02:34 |
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555 |
by nannemdp Sun, 2020-06-07 08:01 |
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The usage of antibody_H3.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 22:50 |
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819 |
by Sunyp_IM Thu, 2020-06-04 08:20 |
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"Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-06-04 05:53 |
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346 |
by Sunyp_IM Thu, 2020-06-04 05:54 |
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RosettaAntibodyDesign: How can I run the protocol without allowing design? by brspurri » Tue, 2020-05-26 08:12 |
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1,230 |
by brspurri Wed, 2020-06-03 13:20 |
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AbinitioRelax detect_disulf_tolerance by aarono » Tue, 2020-06-02 00:13 |
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474 |
by aarono Tue, 2020-06-02 00:13 |
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ligand_docking_error by Alison_Yajie » Mon, 2020-04-20 12:27 |
3 |
1,039 |
by YuFei Sat, 2020-05-30 00:12 |
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Problems with mpi version of antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 23:06 |
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455 |
by Sunyp_IM Thu, 2020-05-28 23:07 |
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mp_transform optimize with franklin2019 scoring by benhardy » Thu, 2020-05-28 08:35 |
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517 |
by benhardy Thu, 2020-05-28 08:45 |
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What is a rational minimal value for the "-nstruct" option by Sunyp_IM » Fri, 2020-05-22 01:28 |
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921 |
by nannemdp Sun, 2020-05-24 14:46 |
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cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues by ValentinaSora » Sun, 2020-05-24 12:32 |
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488 |
by ValentinaSora Sun, 2020-05-24 12:32 |
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relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
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968 |
by smlewis Thu, 2020-05-21 21:05 |
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Changing rosetta scoring to favour less hydrophobic areas by daniloboskovic » Thu, 2020-05-21 03:03 |
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491 |
by vmulligan Thu, 2020-05-21 18:33 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-05-21 09:42 |
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363 |
by Alison_Yajie Thu, 2020-05-21 09:42 |
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Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
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698 |
by tuleshwori Thu, 2020-05-21 02:08 |
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Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1 by cm21 » Wed, 2020-05-20 08:55 |
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729 |
by cm21 Wed, 2020-05-20 11:22 |
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Rna Denovo by helderveras » Wed, 2020-05-06 08:40 |
5 |
1,333 |
by everyday847 Wed, 2020-05-20 08:52 |
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Side-chain grafting at the fixed protein and position by Kazu » Wed, 2020-05-20 08:49 |
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313 |
by Kazu Wed, 2020-05-20 08:49 |
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Transmembrane helix fold-and-dock? by sarah_b » Tue, 2020-05-12 02:09 |
3 |
995 |
by jkleman Tue, 2020-05-19 15:02 |
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protein relax by Alison_Yajie » Tue, 2020-05-19 08:29 |
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358 |
by Alison_Yajie Tue, 2020-05-19 08:29 |
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RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow? by brspurri » Thu, 2020-05-14 11:15 |
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676 |
by brspurri Thu, 2020-05-14 12:24 |
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Multistate design issues with -run:msd_job_dist option and MSDMover by elaine.thai » Wed, 2020-05-13 18:07 |
0 |
493 |
by elaine.thai Wed, 2020-05-13 18:07 |
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Flex_ddG crashes when attempting to move 2 chains (e.g. chains_to_move = A,C) by jcampecino » Wed, 2020-05-13 12:22 |
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397 |
by jcampecino Wed, 2020-05-13 12:22 |
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How to run partial_thread in RosettaCM when residure are more than 9999? by lanselibai » Mon, 2020-05-11 22:43 |
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893 |
by lanselibai Tue, 2020-05-12 20:25 |
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How to concatenate the 3-mer and 9-mer files for RosettaCM? by lanselibai » Fri, 2020-05-08 05:38 |
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1,381 |
by danpf Tue, 2020-05-12 10:58 |
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Template/Input length mismatch error during RosettaCM by marinok » Mon, 2020-05-04 13:12 |
4 |
1,093 |
by marinok Mon, 2020-05-11 12:48 |
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General question regarding ligand-docking by Alison_Yajie » Thu, 2020-05-07 09:48 |
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338 |
by Alison_Yajie Thu, 2020-05-07 09:48 |
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Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans? by ccottrell » Tue, 2020-05-05 20:30 |
5 |
1,216 |
by jadolfbr Wed, 2020-05-06 11:37 |
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