You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
| Topic / Topic starter | Replies | Views |
Last post |
|
|---|---|---|---|---|
|
setup_RosettaCM.py by browns02 » Mon, 2021-06-28 07:13 |
2 |
619 |
by browns02 Tue, 2021-06-29 11:41 |
|
|
NCAA attached at two points by tsztain » Wed, 2021-06-16 15:20 |
3 |
850 |
by matteoferla Sat, 2021-06-19 03:07 |
|
|
different value of score from rna_denovo and rna_score? by yikanzhang » Wed, 2021-02-03 07:17 |
1 |
578 |
by CameronJA Tue, 2021-06-15 20:02 |
|
|
Fastsaxs by Pernille » Mon, 2013-07-22 07:29 |
14 |
34,814 |
by rmoretti Mon, 2021-06-14 12:56 |
|
|
Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:30 |
1 |
567 |
by taylorjones Wed, 2021-06-09 16:38 |
|
|
FastRelax Refinement severe clashes by Victor Tobiasson » Thu, 2021-05-20 06:55 |
0 |
413 |
by Victor Tobiasson Thu, 2021-05-20 06:55 |
|
|
residue_energy_breakdown of a protein-ligand complex. by sam_dc » Tue, 2021-05-18 04:45 |
1 |
598 |
by rmoretti Tue, 2021-05-18 07:21 |
|
|
Issues with modifying dock.xml for multiple ligand docking by DGR95 » Fri, 2021-05-14 12:51 |
0 |
396 |
by DGR95 Fri, 2021-05-14 12:51 |
|
|
Disulfide Bonds in Loop Modeling by code_Monkey » Mon, 2021-05-03 08:27 |
2 |
784 |
by code_Monkey Thu, 2021-05-06 07:14 |
|
|
trRosetta protocol Segmentation Fault by nc-ring » Wed, 2021-04-28 11:57 |
5 |
1,359 |
by nc-ring Tue, 2021-05-04 12:26 |
|
|
Thread target sequence by duz » Thu, 2021-04-01 10:09 |
4 |
1,106 |
by duz Mon, 2021-05-03 07:50 |
|
|
Score Functions for Ligand-protein Docking by ziruiw » Sun, 2021-04-25 13:41 |
4 |
1,489 |
by ziruiw Fri, 2021-04-30 12:01 |
|
|
Help with enzyme design files by Wenithor » Thu, 2021-04-29 10:33 |
1 |
551 |
by rmoretti Thu, 2021-04-29 10:44 |
|
|
hpatch commands and how to identify patches by Bianca Oliva » Thu, 2021-04-29 04:02 |
0 |
470 |
by Bianca Oliva Thu, 2021-04-29 04:02 |
|
|
ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator> by DGR95 » Fri, 2021-04-16 19:26 |
4 |
1,149 |
by DGR95 Wed, 2021-04-28 16:13 |
|
|
RosettaCM/hybridize by kywei » Wed, 2021-04-28 09:56 |
1 |
550 |
by vmulligan Wed, 2021-04-28 12:59 |
|
|
Generalized KIC loop closure affects downstream residues without perturbations by chenna » Mon, 2021-04-26 02:16 |
2 |
724 |
by chenna Wed, 2021-04-28 07:18 |
|
|
Filling the missing loops by code_Monkey » Tue, 2021-04-27 07:44 |
2 |
746 |
by code_Monkey Tue, 2021-04-27 12:11 |
|
|
Element 'trRosettaProtocol': This element is not expected. by csaylan » Tue, 2021-04-20 14:21 |
2 |
750 |
by csaylan Tue, 2021-04-20 16:13 |
|
|
Docking Analysis and Metrics in RosettaLigand. by sam_dc » Tue, 2021-04-20 03:54 |
1 |
841 |
by rmoretti Tue, 2021-04-20 13:27 |
|
|
multi ligand docking using rosetta script by syntekabio2019 » Tue, 2021-04-13 19:31 |
0 |
427 |
by syntekabio2019 Tue, 2021-04-13 19:31 |
|
|
r_frag_quality by ii_cnr » Mon, 2021-04-12 03:06 |
2 |
703 |
by ii_cnr Mon, 2021-04-12 23:44 |
|
|
GeneralizedKIC loop closure error by chenna » Sat, 2021-04-10 00:21 |
2 |
732 |
by chenna Mon, 2021-04-12 22:08 |
|
|
What is an SS0 predictor? by ojmel » Fri, 2021-04-02 14:25 |
0 |
375 |
by ojmel Mon, 2021-04-12 07:50 |
|
|
RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour() by sam_dc » Thu, 2021-03-25 09:32 |
2 |
908 |
by sam_dc Mon, 2021-04-12 07:24 |
|
|
issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
3 |
1,404 |
by He Xiao Sun, 2021-04-11 19:29 |
|
|
Patch to impose tetrahedral geometry on backbone O atom by georg » Thu, 2021-04-08 09:30 |
0 |
395 |
by georg Thu, 2021-04-08 09:31 |
|
|
Loop modeling with constraints by agctomer » Sat, 2021-03-20 03:53 |
3 |
1,065 |
by agctomer Thu, 2021-04-08 07:37 |
|
|
PDB Clustering by code_Monkey » Mon, 2021-04-05 10:40 |
0 |
417 |
by code_Monkey Mon, 2021-04-05 10:40 |
|
|
How to use base_pair_constraint for RNA as a constraint term？ by yels » Sat, 2021-04-03 01:19 |
1 |
598 |
by everyday847 Sun, 2021-04-04 12:48 |
|
|
Can rosetta generate a centroid model based on the rna sequence? by yels » Fri, 2021-03-26 04:06 |
7 |
1,613 |
by yels Wed, 2021-03-31 18:31 |
|
|
Protein Ensemble RosettaLigand Docking by sam_dc » Fri, 2021-03-26 10:18 |
2 |
816 |
by sam_dc Fri, 2021-03-26 12:04 |
|
|
Should I be stripping water molecules from my input structure for Rosetta Design? by chrisHKL » Wed, 2021-03-24 14:22 |
1 |
594 |
by smlewis Wed, 2021-03-24 14:59 |
|
|
Can't generate a cst file to use with ddg_monomer application by ctqwong » Sat, 2021-03-13 03:53 |
6 |
1,598 |
by ctqwong Thu, 2021-03-18 02:04 |
|
|
Ab Initio folding with HEM ligand molecule by jseco » Fri, 2021-03-05 06:49 |
0 |
427 |
by jseco Mon, 2021-03-08 03:40 |
|
|
Comparative Modeling Tutorial by code_Monkey » Thu, 2021-03-04 12:35 |
1 |
573 |
by rmoretti Fri, 2021-03-05 09:35 |
|
|
Error from clean_pdb.py by code_Monkey » Mon, 2021-03-01 17:00 |
2 |
756 |
by code_Monkey Thu, 2021-03-04 12:14 |
|
|
BuildPeptide - Using Phosphorylated and Sulfated Tyrosine by jlawrie » Thu, 2020-09-03 14:29 |
1 |
856 |
by cryosky Mon, 2021-03-01 21:37 |
|
|
How to write down a connection between ligand's atom and metal ion from enzyme? by Corvin » Mon, 2021-02-15 06:54 |
7 |
1,862 |
by aloshbau Mon, 2021-03-01 20:06 |
|
|
antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages by AlfredoKCL » Sun, 2021-02-28 16:42 |
2 |
766 |
by AlfredoKCL Mon, 2021-03-01 04:07 |
|
|
CoupledMoves not altering backbone coordinates? by amorin » Wed, 2021-01-20 11:38 |
15 |
3,671 |
by amorin Sat, 2021-02-27 20:29 |
|
|
Number of max allowed mutations from WT sequence by mouung » Fri, 2020-09-04 02:33 |
2 |
1,081 |
by amorin Fri, 2021-02-12 08:53 |
|
|
Segfault with Pepspec by almeida85 » Thu, 2021-02-11 02:56 |
0 |
385 |
by almeida85 Thu, 2021-02-11 02:56 |
|
|
core.optimization.LineMinimizer: [ ERROR ] Inaccurate G! by aralz » Thu, 2021-02-11 00:46 |
0 |
534 |
by aralz Thu, 2021-02-11 00:46 |
|
|
hbond_sr_bb and hbond_lr_bb for different chains by tylerborrman » Tue, 2020-10-13 13:41 |
2 |
1,022 |
by tylerborrman Tue, 2021-02-09 16:33 |
|
|
Rosetta antibody- modeling in the presense of an antigen by agctomer » Mon, 2021-02-01 03:19 |
4 |
1,193 |
by nannemdp Wed, 2021-02-03 08:52 |
|
|
antibody.linuxgccrelease- output models don't have the same sequence as the input fasta by agctomer » Thu, 2021-01-21 15:35 |
4 |
1,243 |
by agctomer Sun, 2021-01-31 01:06 |
|
|
Modelling humanized camelid like antibody by terabithia2011 » Tue, 2021-01-26 10:12 |
0 |
450 |
by terabithia2011 Tue, 2021-01-26 10:12 |
|
|
Creating fragment files for proteins less than 27 aa in length by Poladu » Tue, 2021-01-26 07:50 |
0 |
456 |
by Poladu Tue, 2021-01-26 07:50 |
|
|
Question with rosetta AbPredict tutorial by terabithia2011 » Mon, 2021-01-25 09:24 |
0 |
425 |
by terabithia2011 Mon, 2021-01-25 09:24 |
|
|
[Solved] Resetting a pose with RigidBodyTransMover by bjharris » Wed, 2021-01-13 14:01 |
1 |
624 |
by bjharris Fri, 2021-01-22 17:34 |
|
|
manually defining CDRs in antibody modelling by gard.nelson » Fri, 2020-07-10 13:31 |
1 |
789 |
by brspurri Wed, 2021-01-20 08:11 |
|
|
RosettaAntibody - No matching templates for CDR1 by agctomer » Tue, 2021-01-19 22:45 |
0 |
491 |
by agctomer Tue, 2021-01-19 22:45 |
|
|
[Solved] RosettaAntibody3 - Grafting step is failing to detect H3 from the input sequence by brspurri » Mon, 2021-01-04 16:46 |
1 |
755 |
by brspurri Mon, 2021-01-18 18:14 |
|
|
A problem with "molfile_to_params.py" by Rosettasz » Mon, 2013-08-19 19:35 |
10 |
9,059 |
by egecav Mon, 2021-01-18 05:41 |
|
|
relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
5 |
1,499 |
by jadolfbr Fri, 2021-01-15 08:06 |
|
|
Writing down properties for new atom types by Corvin » Tue, 2021-01-12 04:30 |
0 |
388 |
by Corvin Wed, 2021-01-13 04:00 |
|
|
constraints in Rosetta ligand docking (AddorRemoveMatchCsts, Addconstraints Mover, and ConstraintSetMover) by rohi » Mon, 2021-01-11 13:32 |
0 |
602 |
by rohi Mon, 2021-01-11 13:58 |
|
|
Design of multimeric protein by ldlamini » Mon, 2021-01-11 07:23 |
0 |
438 |
by ldlamini Mon, 2021-01-11 07:23 |
|
|
Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)? by Corvin » Wed, 2020-12-16 04:58 |
0 |
543 |
by Corvin Wed, 2020-12-30 09:21 |
|
|
RemodelMover and Input Pose by ozyo » Tue, 2020-12-29 09:41 |
0 |
501 |
by ozyo Tue, 2020-12-29 09:41 |
|
|
protein-ligand docking rescoring with interfaceAnalyzer by syntekabio2019 » Sat, 2020-12-19 03:59 |
2 |
853 |
by syntekabio2019 Sun, 2020-12-20 21:10 |
|
|
flexpepdcok of lipid conjugated peptide with glyco protein. by ravi.thakkkar369 » Fri, 2020-12-18 13:00 |
0 |
424 |
by ravi.thakkkar369 Fri, 2020-12-18 13:00 |
|
|
where is generate_ligens.linuxgccrelease? by Nicole Deng » Thu, 2020-12-03 00:00 |
2 |
958 |
by Nicole Deng Fri, 2020-12-18 00:28 |
|
|
pepspec anchor dock by Astghik » Tue, 2020-10-20 05:31 |
6 |
1,939 |
by Pappmaschee Thu, 2020-12-17 02:24 |
|
|
Error when using Remodel on a protein with a chemically bound ligand by Pappmaschee » Wed, 2020-12-16 09:23 |
0 |
569 |
by Pappmaschee Wed, 2020-12-16 09:23 |
|
|
RosettaScripts filter BuriedUnsatHbonds2 missing still by zdaw » Fri, 2020-12-11 12:39 |
3 |
1,067 |
by zdaw Tue, 2020-12-15 15:38 |
|
|
RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
3 |
1,067 |
by everyday847 Wed, 2020-12-09 21:46 |
|
|
Can I believe the antibody design result? by Sunyp_IM » Mon, 2020-11-30 03:29 |
6 |
1,912 |
by jadolfbr Sun, 2020-12-06 17:41 |
|
|
Error: in membrane docking : Cannot split pose by membrane jump! Quitting... by Astghik » Tue, 2020-11-24 05:27 |
2 |
931 |
by Astghik Thu, 2020-12-03 02:35 |
|
|
Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms by Corvin » Wed, 2020-12-02 04:00 |
1 |
645 |
by rmoretti Wed, 2020-12-02 07:27 |
|
|
polymer docking using rosetta scripts by syntekabio2019 » Fri, 2020-11-27 01:51 |
1 |
687 |
by rmoretti Fri, 2020-11-27 10:47 |
|
|
Prevention of the negatively charged Nitrogen protonation by coupled_moves by Corvin » Wed, 2020-11-18 02:56 |
4 |
1,385 |
by Corvin Wed, 2020-11-25 02:58 |
|
|
RosettaMP: issue with generating .lips4 file by ksy141 » Mon, 2019-01-21 17:17 |
5 |
2,324 |
by noahC_noahDo Fri, 2020-11-20 11:29 |
|
|
How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure? by Sunyp_IM » Sun, 2020-11-08 08:07 |
5 |
1,747 |
by Brahm Yachnin Wed, 2020-11-18 17:21 |
|
|
debug rosetta_scripts FunFolDes run by tatsiana.bylund » Sun, 2019-08-18 23:17 |
1 |
1,005 |
by neelamraju.srid... Wed, 2020-11-18 05:47 |
|
|
Membrane Abinitio modeling error by jkyan007 » Thu, 2020-10-29 03:30 |
1 |
696 |
by noahC_noahDo Tue, 2020-11-17 10:35 |
|
|
Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading by Corvin » Tue, 2020-06-30 00:36 |
12 |
5,220 |
by Corvin Tue, 2020-11-10 01:22 |
|
|
Using Rmsd RosettaScripts filter with alignment files by bjharris » Sun, 2020-11-08 15:51 |
1 |
652 |
by rmoretti Sun, 2020-11-08 18:56 |
|
|
core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by AlfredoKCL » Sat, 2020-11-07 18:21 |
0 |
715 |
by AlfredoKCL Sat, 2020-11-07 18:21 |
|
|
How to add additional rounds of design and optimization in Rosetta scripts? by Nicole Deng » Tue, 2020-11-03 19:05 |
2 |
872 |
by Nicole Deng Thu, 2020-11-05 03:04 |
|
|
Speed problem when running RosettaLigand ligand docking by Nicole Deng » Tue, 2019-10-08 04:29 |
2 |
1,532 |
by Nicole Deng Tue, 2020-11-03 19:07 |
|
|
antibody.mpi.linuxgccrelease some antibodies failing to model by drewaight » Mon, 2020-11-02 17:07 |
0 |
690 |
by drewaight Mon, 2020-11-02 17:07 |
|
|
not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
2 |
1,066 |
by xinmiaohe Mon, 2020-10-19 13:18 |
|
|
Scoring functions: talaris2013 incompatible versions by Smbat » Tue, 2020-10-13 06:18 |
5 |
1,830 |
by Astghik Thu, 2020-10-15 00:48 |
|
|
neutral N-term and C-term by nawsad » Sun, 2013-06-09 10:20 |
7 |
7,546 |
by helenah Thu, 2020-10-08 05:29 |
|
|
Modelling of multi-component symmetrical structures by LanMei » Wed, 2020-10-07 09:58 |
0 |
585 |
by LanMei Wed, 2020-10-07 09:58 |
|
|
minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion by Kharlamov1317a » Mon, 2020-09-21 08:46 |
1 |
1,092 |
by Kharlamov1317a Wed, 2020-10-07 08:26 |
|
|
Robetta ab initio - TrRosetta for membrane proteins by benhardy » Wed, 2020-09-30 08:42 |
0 |
913 |
by benhardy Wed, 2020-09-30 08:42 |
|
|
Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
1 |
1,304 |
by benhardy Wed, 2020-09-30 04:24 |
|
|
Input structure by Soler » Mon, 2020-09-28 13:18 |
1 |
668 |
by ssrb Tue, 2020-09-29 12:37 |
|
|
NCAA Rotamers for Cyclosporin by marinok » Mon, 2020-09-28 14:11 |
0 |
607 |
by marinok Mon, 2020-09-28 14:11 |
|
|
Trouble running MPI docking protocol, please help! by Rob_Barringer » Tue, 2020-08-18 06:40 |
2 |
1,525 |
by Rob_Barringer Fri, 2020-09-25 05:45 |
|
|
RosettaCM or FastRelax? by Tianyang89 » Wed, 2020-09-23 07:46 |
3 |
1,273 |
by danpf Thu, 2020-09-24 13:44 |
|
|
Sequence design with mixed fixbb-relax protocol by kszczepaniak » Thu, 2013-10-03 08:11 |
4 |
4,678 |
by fede Wed, 2020-09-23 11:24 |
|
|
I need some help for using pHDock applications(histidine protonation / pH-dependent binding) by leygkn » Tue, 2020-09-22 18:40 |
1 |
707 |
by leygkn Tue, 2020-09-22 22:46 |
|
|
When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
4 |
1,547 |
by Martin Floor Tue, 2020-09-22 00:48 |
|
|
Building loop extensions in a membrane protein with Remodel by benhardy » Tue, 2020-06-02 08:21 |
2 |
1,367 |
by benhardy Sun, 2020-09-20 11:15 |
|
|
Pepspec Anchor Dock by Soler » Fri, 2020-09-18 08:09 |
0 |
642 |
by Soler Fri, 2020-09-18 08:09 |
|
|
FASTA for Octopus by Smbat » Wed, 2020-09-16 05:40 |
1 |
909 |
by rmoretti Wed, 2020-09-16 22:11 |
Log in to post new content in the forum.
