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Rosetta 3 - Applications
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Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
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2,659 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
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2,559 |
by rmoretti Mon, 2018-11-12 14:35 |
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Filling the missing loops by code_Monkey » Tue, 2021-04-27 07:44 |
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1,166 |
by code_Monkey Tue, 2021-04-27 12:11 |
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Files for Spatial Constraints by Derek » Tue, 2016-04-12 01:00 |
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1,718 |
by Derek Wed, 2016-04-27 01:31 |
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Fewer than expected structures in clustering output by fabiotrovato » Thu, 2020-08-20 00:59 |
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623 |
by fabiotrovato Thu, 2020-08-20 00:59 |
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
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4,519 |
by smlewis Mon, 2014-04-21 06:47 |
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favor native residue in fixBB design by ast » Mon, 2012-12-10 06:00 |
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4,336 |
by smlewis Mon, 2014-04-21 06:47 |
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Fastsaxs by Pernille » Mon, 2013-07-22 07:29 |
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36,185 |
by rmoretti Mon, 2021-06-14 12:56 |
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FastRelaxMover parameters for antibody-antigen interaction analysis by samuel_k » Thu, 2022-01-27 01:08 |
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689 |
by samuel_k Thu, 2022-01-27 01:08 |
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FastRelax Refinement severe clashes by Victor Tobiasson » Thu, 2021-05-20 06:55 |
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580 |
by Victor Tobiasson Thu, 2021-05-20 06:55 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
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3,512 |
by Pernille Thu, 2014-07-03 07:21 |
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Fastrelax problem by Pernille » Tue, 2014-06-17 08:59 |
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1,889 |
by Pernille Fri, 2014-06-20 00:17 |
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FASTA for Octopus by Smbat » Wed, 2020-09-16 05:40 |
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1,183 |
by rmoretti Wed, 2020-09-16 22:11 |
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Fast relax not working by eyong123 » Fri, 2017-04-21 06:06 |
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1,711 |
by rmoretti Fri, 2017-04-21 07:41 |
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Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
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2,447 |
by kalabharath Wed, 2015-04-29 16:21 |
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Failed glycine check when running RosettaRemodel to build disulfide by cheyuk » Fri, 2014-06-27 02:31 |
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1,923 |
by everyday847 Sun, 2014-09-28 21:16 |
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extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
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4,550 |
by attesor Tue, 2015-01-27 02:20 |
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extract_pdb application parse error with silent file by staciekim » Tue, 2017-08-22 12:39 |
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4,931 |
by rmoretti Thu, 2017-08-24 08:19 |
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Extracting top score PIPER models by almeida85 » Mon, 2020-08-31 07:17 |
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818 |
by almeida85 Mon, 2020-08-31 07:17 |
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extract silent error - tag mismatch by shrutikhare » Thu, 2014-04-03 00:13 |
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6,391 |
by rmoretti Mon, 2014-04-21 10:47 |
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Extract PDB structures from database by cossio » Mon, 2018-01-29 09:30 |
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3,199 |
by rmoretti Fri, 2018-11-23 11:23 |
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extract docking pose from ligand docking silent file by Ruska322 » Sat, 2019-09-07 05:21 |
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845 |
by Ruska322 Sat, 2019-09-07 05:21 |
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Expected density by GabrielDucrocq » Thu, 2022-07-14 06:38 |
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by matteoferla Wed, 2022-07-20 10:50 |
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Executing the clean_pdb.py script by Rkfoury » Fri, 2015-02-20 10:16 |
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3,594 |
by lanselibai Tue, 2015-02-24 02:36 |
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example scripts for comparative modeling by fglaser » Sun, 2011-02-27 21:50 |
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3,295 |
by maxebert Mon, 2014-04-21 06:47 |
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Errors in Getting Erraser to run by belousoff » Thu, 2017-06-01 16:13 |
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10,311 |
by belousoff Mon, 2017-06-26 16:46 |
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errors about RIFdocking by sia » Sun, 2022-07-24 20:45 |
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1,246 |
by sia Tue, 2022-08-02 20:08 |
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ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly' by smiruthi » Mon, 2011-12-12 14:27 |
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2,577 |
by rmoretti Mon, 2014-04-21 06:47 |
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error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease by xinmiaohe » Thu, 2020-01-30 22:09 |
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1,677 |
by xinmiaohe Fri, 2020-01-31 08:23 |
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ERROR: Unable to fill in missing atoms. by mieczyslaw » Tue, 2020-10-20 09:43 |
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4,915 |
by rayyoung Thu, 2021-11-18 10:13 |
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ERROR: Specified chain does not exist. by ajaniharesh » Fri, 2019-04-05 11:14 |
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2,227 |
by ajaniharesh Tue, 2019-04-09 06:53 |
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ERROR: no fragment to compute secondary structure by byin » Sun, 2011-08-07 23:55 |
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4,143 |
by smlewis Mon, 2014-04-21 06:47 |
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Error: in membrane docking : Cannot split pose by membrane jump! Quitting... by Astghik » Tue, 2020-11-24 05:27 |
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1,244 |
by Astghik Thu, 2020-12-03 02:35 |
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ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42 by yliang20 » Wed, 2022-06-15 22:22 |
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by adriancmf25 Thu, 2022-07-28 02:09 |
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ERROR: APBS failed to generate the result file. by bhavranek » Sat, 2021-12-18 11:01 |
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by bhavranek Sun, 2021-12-26 21:05 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Wed, 2016-07-06 10:35 |
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1,847 |
by rmoretti Tue, 2016-07-12 08:56 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Mon, 2016-07-25 13:35 |
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2,148 |
by gsuchunli Mon, 2016-07-25 13:56 |
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Error with xml script by almeida85 » Tue, 2023-03-28 01:53 |
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111 |
by almeida85 Tue, 2023-05-16 01:00 |
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Error with the mpi version of simple_cycpep_predict by Florent Langenfeld » Wed, 2020-02-05 05:16 |
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2,547 |
by vmulligan Fri, 2020-04-10 02:54 |
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Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking by Corvin » Wed, 2019-06-19 08:40 |
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3,283 |
by rmoretti Tue, 2019-07-09 10:13 |
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Error with RoseTTAFold by sc19 » Thu, 2022-07-14 03:40 |
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560 |
by sc19 Thu, 2022-07-14 03:40 |
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Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
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1,211 |
by jadolfbr Thu, 2019-09-19 08:53 |
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Error with RNA_denovo by zmfowler » Thu, 2022-07-14 05:34 |
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by zmfowler Thu, 2022-07-14 05:34 |
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Error with recognizing rotamer library atoms by oerbilgin » Fri, 2011-11-04 15:23 |
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26,520 |
by oerbilgin Mon, 2014-04-21 06:47 |
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error with fragment_picker.linuxgccrelease by jiongzhang » Tue, 2012-04-17 09:07 |
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3,213 |
by smlewis Mon, 2014-04-21 06:47 |
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Error with Formatdb of legacy blast when running "install_dependencies.pl"? by Danielsebas » Mon, 2019-09-16 09:30 |
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1,444 |
by Danielsebas Tue, 2019-09-17 01:03 |
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Error with FlexPepDock by aloshbau » Sat, 2013-08-10 11:51 |
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2,423 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error with -patch_selectors by subha » Tue, 2017-06-06 14:40 |
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3,234 |
by subha Fri, 2017-06-09 15:42 |
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Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
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4,700 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
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Error while running Enzyme Design by saxen » Fri, 2011-10-21 15:46 |
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9,912 |
by akpole Mon, 2014-04-21 06:47 |
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Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-' by AG88 » Thu, 2011-11-03 01:25 |
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7,187 |
by weitzner Mon, 2014-04-21 06:47 |
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Error while reading in silent file by rweisse » Mon, 2015-04-20 00:31 |
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4,930 |
by rmoretti Thu, 2015-04-30 16:46 |
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Error when using Remodel on a protein with a chemically bound ligand by Pappmaschee » Wed, 2020-12-16 09:23 |
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823 |
by Pappmaschee Wed, 2020-12-16 09:23 |
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Error when trying docking protocol with different ligand by scyphs » Wed, 2020-08-05 04:37 |
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1,229 |
by scyphs Mon, 2020-08-10 08:09 |
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Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
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3,827 |
by dfcoelho Tue, 2017-10-17 11:52 |
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Error when running Remodel with EnzDes constraint file by aloshbau » Wed, 2013-04-17 22:23 |
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3,693 |
by aloshbau Mon, 2014-04-21 06:47 |
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Error when running cluster by aloshbau » Wed, 2013-05-01 20:45 |
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4,260 |
by rmoretti Mon, 2014-04-21 06:47 |
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Error src/core/scoring/MembraneTopology.cc line: 139 by Daniel Hall » Thu, 2017-07-13 04:58 |
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5,018 |
by rmoretti Tue, 2017-07-18 09:00 |
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Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type" by amorin » Mon, 2021-09-27 12:16 |
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671 |
by amorin Mon, 2021-09-27 12:16 |
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error mesages from RosettaDock by AlanZhao » Mon, 2011-03-21 11:42 |
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2,360 |
by smlewis Mon, 2014-04-21 06:47 |
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Error Interface analyser by jrcf » Thu, 2017-06-22 12:55 |
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1,614 |
by smlewis Thu, 2017-06-22 13:31 |
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error in loop remodeling by syntekabio2019 » Wed, 2023-04-05 01:00 |
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82 |
by syntekabio2019 Wed, 2023-04-05 01:01 |
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Error in Loop modeling and other queries by ashu4487 » Wed, 2016-05-11 18:23 |
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2,000 |
by rmoretti Fri, 2016-06-17 10:15 |
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Error in a new docking by jrcf » Wed, 2017-05-17 19:26 |
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3,767 |
by tingting Tue, 2022-03-15 23:55 |
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Error in using “loopmodel” for selective rebuilding by sushreet » Mon, 2014-07-14 11:57 |
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2,581 |
by sushreet Tue, 2014-08-26 13:02 |
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Error Implementing Match Style Constraints by pwging13 » Thu, 2019-12-19 09:53 |
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815 |
by pwging13 Thu, 2019-12-19 09:53 |
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Error from clean_pdb.py by code_Monkey » Mon, 2021-03-01 17:00 |
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1,054 |
by code_Monkey Thu, 2021-03-04 12:14 |
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error extracting PDB from silent from AbinitioRelax with constraints by attesor » Wed, 2017-06-14 04:15 |
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2,041 |
by smlewis Fri, 2017-06-16 07:35 |
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Error encountered during Rosetta loop modeling by max » Tue, 2014-11-25 02:17 |
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3,363 |
by max Thu, 2014-11-27 02:56 |
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Error during single state design by sujigeorge1979 » Sat, 2020-01-18 00:37 |
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4,007 |
by rmoretti Thu, 2020-01-30 15:42 |
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Enzyme design with variable CST blocks possible? by petrikigor » Thu, 2011-10-06 11:24 |
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6,498 |
by petrikigor Mon, 2014-04-21 06:47 |
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Enzyme Design with additional covalent backbone bonds by mwfranklin » Wed, 2016-08-03 10:23 |
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2,229 |
by rmoretti Mon, 2016-09-05 11:29 |
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Enzyme design output silent file and score file by deltag » Fri, 2012-09-28 13:07 |
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2,213 |
by rmoretti Mon, 2014-04-21 06:47 |
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Enzyme Design Not Editing Structure by liuwenxi » Wed, 2022-05-18 10:12 |
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549 |
by liuwenxi Wed, 2022-05-18 10:12 |
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Enzyme Design FlexBB Protocol Bug: DNA/RNA handling by kettner » Fri, 2019-06-14 14:16 |
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1,628 |
by rmoretti Mon, 2019-06-24 13:46 |
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enzyme design and output_matchres_only by petrikigor » Wed, 2012-10-24 18:45 |
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4,690 |
by petrikigor Mon, 2014-04-21 06:47 |
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Enzyme Design - Score File by nwhoppe » Thu, 2016-04-07 15:11 |
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1,915 |
by rmoretti Fri, 2016-04-08 07:39 |
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Enzdes: increase weight of energy term for steric clashes with ligand by eyong123 » Wed, 2015-03-25 09:12 |
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5,492 |
by rmoretti Fri, 2015-04-24 12:02 |
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Enzdes scorefile lost, can I recreate it by eyong123 » Wed, 2015-04-15 05:55 |
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2,413 |
by eyong123 Wed, 2015-04-22 11:33 |
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Enzdes score file discrepancy between generated pdb and scores.out by eyong123 » Wed, 2015-03-25 08:52 |
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6,511 |
by eyong123 Mon, 2015-06-29 04:44 |
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Enzdes constraint file not defined correctly by eyong123 » Fri, 2015-03-27 07:16 |
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3,420 |
by rmoretti Thu, 2015-04-16 10:38 |
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Ensemble Docking in Rosetta3.5? by protos_heis » Fri, 2015-05-22 06:42 |
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7,714 |
by protos_heis Mon, 2015-06-08 07:00 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
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2,553 |
by David Weis Mon, 2017-03-13 06:40 |
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Energy function and iteration script files by michelleqyh » Fri, 2019-09-27 09:06 |
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1,048 |
by smlewis Fri, 2019-09-27 11:54 |
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EMERALD method not working, Rosetta version not available for download by seba » Thu, 2023-05-04 08:14 |
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195 |
by seba Sun, 2023-05-07 02:39 |
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Element 'trRosettaProtocol': This element is not expected. by csaylan » Tue, 2021-04-20 14:21 |
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1,083 |
by csaylan Tue, 2021-04-20 16:13 |
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duplex RNA by amir_tagh » Thu, 2021-08-05 06:34 |
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769 |
by everyday847 Mon, 2021-08-16 10:43 |
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dssp by MA » Thu, 2017-10-05 09:34 |
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1,565 |
by rmoretti Tue, 2017-10-10 09:54 |
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Don't know how to extract scores from a RNA de novo silent file. by Basantab » Wed, 2011-11-23 17:27 |
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9,077 |
by smlewis Mon, 2014-04-21 06:47 |
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domain:domain fusion by felipet » Thu, 2017-06-15 13:13 |
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4,694 |
by felipet Fri, 2017-06-16 11:42 |
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Domain insertion with Non-CAA by mwfranklin » Mon, 2017-01-16 12:30 |
0 |
1,551 |
by mwfranklin Mon, 2017-01-16 12:30 |
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does the loop kinetic support MPI now? by albumns » Fri, 2012-10-26 06:31 |
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2,278 |
by smlewis Mon, 2014-04-21 06:47 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
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3,265 |
by lanselibai Tue, 2015-01-13 14:25 |
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Does linker modeling exist? by aroop » Wed, 2012-02-22 07:34 |
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4,861 |
by smlewis Mon, 2014-04-21 06:47 |
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Does it make sense if I do backrub after sequence design? by johnnytam100 » Thu, 2019-08-15 05:15 |
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1,901 |
by johnnytam100 Fri, 2019-08-16 00:20 |
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Does antibody_numbering_converter support camelid antibody? by mxp » Tue, 2020-07-07 01:21 |
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693 |
by mxp Tue, 2020-07-07 01:21 |
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DockingProtocol by Soler » Fri, 2022-02-11 00:12 |
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1,277 |
by gezmi Tue, 2022-02-15 21:47 |
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Docking-RMS value nan by jlawrie » Wed, 2020-08-12 07:03 |
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1,361 |
by jlawrie Wed, 2020-08-12 07:27 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
2 |
1,386 |
by jlawrie Wed, 2020-08-12 08:57 |
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Docking with loop rebuilding by kxiao » Sun, 2015-06-28 19:37 |
1 |
1,966 |
by rmoretti Fri, 2015-07-03 14:41 |
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