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Rosetta 3 - Applications
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Flexpep docking freezing issue at "press enter to continue" by rlwoltz » Tue, 2013-01-22 13:31 |
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3,050 |
by rlwoltz Mon, 2014-04-21 06:47 |
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Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
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2,680 |
by smlewis Mon, 2014-04-21 06:47 |
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Flexible docking using rosetta density-fitting for DNA by helm » Thu, 2012-06-14 23:43 |
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2,697 |
by smlewis Mon, 2014-04-21 06:47 |
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fixing sequence during grafting in antibody_designer by COM » Fri, 2020-01-24 11:38 |
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1,293 |
by jadolfbr Tue, 2020-01-28 09:13 |
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Fixing part of a ligand in dock-design by hssnzdh2 » Mon, 2015-11-23 17:14 |
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2,196 |
by rmoretti Tue, 2015-11-24 16:16 |
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fixing disulfides in homolgy modeling by pdbb » Wed, 2013-02-13 11:43 |
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11,564 |
by kamau Mon, 2014-09-22 09:39 |
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Fixing and Building disulfide bonds in homology modeling by kamau » Wed, 2014-09-24 11:33 |
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2,408 |
by kamau Wed, 2014-09-24 11:35 |
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FixedBB design output no beta strands by tkoh » Fri, 2023-08-25 01:02 |
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247 |
by rmoretti Tue, 2023-08-29 20:13 |
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fixbb with symmetry error by Prasanth Kumar » Sun, 2014-01-26 10:56 |
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5,314 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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Fixbb Multiple Resfiles by protos_heis » Mon, 2012-10-15 10:34 |
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14,693 |
by protos_heis Mon, 2014-04-21 06:47 |
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fixbb design using damped LJ by Anonymous » Fri, 2012-08-17 03:51 |
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7,665 |
by Anonymous Mon, 2014-04-21 06:47 |
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fixbb and ncaa's by jarek » Thu, 2012-11-08 04:55 |
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4,714 |
by jcminerlanl Thu, 2017-12-21 10:13 |
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fixbb algorithm reference? by tylerborrman » Wed, 2015-09-23 10:20 |
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5,074 |
by tylerborrman Mon, 2015-09-28 09:30 |
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fix the left part doesn't work by albumns » Wed, 2012-11-07 00:02 |
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6,777 |
by albumns Mon, 2014-04-21 06:47 |
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Finding lowest energy structure among generated structures by Marius1987 » Sun, 2016-04-10 11:38 |
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1,497 |
by Marius1987 Sun, 2016-04-10 12:09 |
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Filtering while clustering by David Hoover » Wed, 2011-03-30 07:03 |
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2,605 |
by smlewis Mon, 2014-04-21 06:47 |
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Filter for fixed-bb design using RosettaScript? by chrisHKL » Fri, 2020-02-28 19:47 |
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2,326 |
by vmulligan Mon, 2020-03-02 13:40 |
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Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
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2,884 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
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2,853 |
by rmoretti Mon, 2018-11-12 14:35 |
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Filling the missing loops by code_Monkey » Tue, 2021-04-27 07:44 |
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1,514 |
by code_Monkey Tue, 2021-04-27 12:11 |
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Files for Spatial Constraints by Derek » Tue, 2016-04-12 01:00 |
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1,867 |
by Derek Wed, 2016-04-27 01:31 |
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Fewer than expected structures in clustering output by fabiotrovato » Thu, 2020-08-20 00:59 |
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738 |
by fabiotrovato Thu, 2020-08-20 00:59 |
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
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4,817 |
by smlewis Mon, 2014-04-21 06:47 |
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favor native residue in fixBB design by ast » Mon, 2012-12-10 06:00 |
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4,635 |
by smlewis Mon, 2014-04-21 06:47 |
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Fastsaxs by Pernille » Mon, 2013-07-22 07:29 |
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37,110 |
by rmoretti Mon, 2021-06-14 12:56 |
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FastRelaxMover parameters for antibody-antigen interaction analysis by samuel_k » Thu, 2022-01-27 01:08 |
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906 |
by samuel_k Thu, 2022-01-27 01:08 |
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FastRelax Refinement severe clashes by Victor Tobiasson » Thu, 2021-05-20 06:55 |
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706 |
by Victor Tobiasson Thu, 2021-05-20 06:55 |
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Fastrelax problem by Pernille » Tue, 2014-06-17 08:59 |
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2,034 |
by Pernille Fri, 2014-06-20 00:17 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
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3,758 |
by Pernille Thu, 2014-07-03 07:21 |
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FASTA for Octopus by Smbat » Wed, 2020-09-16 05:40 |
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1,385 |
by rmoretti Wed, 2020-09-16 22:11 |
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Fast relax not working by eyong123 » Fri, 2017-04-21 06:06 |
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1,862 |
by rmoretti Fri, 2017-04-21 07:41 |
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Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
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2,647 |
by kalabharath Wed, 2015-04-29 16:21 |
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Failed glycine check when running RosettaRemodel to build disulfide by cheyuk » Fri, 2014-06-27 02:31 |
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2,081 |
by everyday847 Sun, 2014-09-28 21:16 |
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extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
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4,853 |
by attesor Tue, 2015-01-27 02:20 |
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extract_pdb application parse error with silent file by staciekim » Tue, 2017-08-22 12:39 |
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5,415 |
by rmoretti Thu, 2017-08-24 08:19 |
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Extracting top score PIPER models by almeida85 » Mon, 2020-08-31 07:17 |
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955 |
by almeida85 Mon, 2020-08-31 07:17 |
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extract silent error - tag mismatch by shrutikhare » Thu, 2014-04-03 00:13 |
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6,778 |
by rmoretti Mon, 2014-04-21 10:47 |
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Extract PDB structures from database by cossio » Mon, 2018-01-29 09:30 |
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3,572 |
by rmoretti Fri, 2018-11-23 11:23 |
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extract docking pose from ligand docking silent file by Ruska322 » Sat, 2019-09-07 05:21 |
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951 |
by Ruska322 Sat, 2019-09-07 05:21 |
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Expected density by GabrielDucrocq » Thu, 2022-07-14 06:38 |
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845 |
by matteoferla Wed, 2022-07-20 10:50 |
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Executing the clean_pdb.py script by Rkfoury » Fri, 2015-02-20 10:16 |
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3,773 |
by lanselibai Tue, 2015-02-24 02:36 |
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example scripts for comparative modeling by fglaser » Sun, 2011-02-27 21:50 |
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3,498 |
by maxebert Mon, 2014-04-21 06:47 |
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Errors in Getting Erraser to run by belousoff » Thu, 2017-06-01 16:13 |
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11,488 |
by belousoff Mon, 2017-06-26 16:46 |
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errors about RIFdocking by sia » Sun, 2022-07-24 20:45 |
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2,020 |
by sia Tue, 2022-08-02 20:08 |
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ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly' by smiruthi » Mon, 2011-12-12 14:27 |
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2,722 |
by rmoretti Mon, 2014-04-21 06:47 |
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error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease by xinmiaohe » Thu, 2020-01-30 22:09 |
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1,890 |
by xinmiaohe Fri, 2020-01-31 08:23 |
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ERROR: Unable to fill in missing atoms. by mieczyslaw » Tue, 2020-10-20 09:43 |
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5,806 |
by rayyoung Thu, 2021-11-18 10:13 |
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ERROR: Specified chain does not exist. by ajaniharesh » Fri, 2019-04-05 11:14 |
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2,522 |
by ajaniharesh Tue, 2019-04-09 06:53 |
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ERROR: ResidueType::add_ring: Requested atoms don't exist in this ResidueType! by walidabualafia » Thu, 2023-07-20 09:44 |
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231 |
by rmoretti Thu, 2023-07-20 10:08 |
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ERROR: no fragment to compute secondary structure by byin » Sun, 2011-08-07 23:55 |
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4,394 |
by smlewis Mon, 2014-04-21 06:47 |
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Error: in membrane docking : Cannot split pose by membrane jump! Quitting... by Astghik » Tue, 2020-11-24 05:27 |
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1,478 |
by Astghik Thu, 2020-12-03 02:35 |
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ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42 by yliang20 » Wed, 2022-06-15 22:22 |
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1,075 |
by jxw Wed, 2023-10-11 10:04 |
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ERROR: APBS failed to generate the result file. by bhavranek » Sat, 2021-12-18 11:01 |
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1,004 |
by bhavranek Sun, 2021-12-26 21:05 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Wed, 2016-07-06 10:35 |
1 |
2,002 |
by rmoretti Tue, 2016-07-12 08:56 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Mon, 2016-07-25 13:35 |
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2,299 |
by gsuchunli Mon, 2016-07-25 13:56 |
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Error with xml script by almeida85 » Tue, 2023-03-28 01:53 |
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413 |
by almeida85 Tue, 2023-05-16 01:00 |
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Error with the mpi version of simple_cycpep_predict by Florent Langenfeld » Wed, 2020-02-05 05:16 |
5 |
2,969 |
by vmulligan Fri, 2020-04-10 02:54 |
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Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking by Corvin » Wed, 2019-06-19 08:40 |
5 |
3,796 |
by rmoretti Tue, 2019-07-09 10:13 |
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Error with SapScoreMetric (SimpleMetric sap_score not found in basic::datacache::DataMap) by Seongsung » Fri, 2023-11-24 05:09 |
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44 |
by Seongsung Fri, 2023-11-24 13:14 |
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Error with RoseTTAFold by sc19 » Thu, 2022-07-14 03:40 |
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836 |
by sc19 Thu, 2022-07-14 03:40 |
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Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
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1,374 |
by jadolfbr Thu, 2019-09-19 08:53 |
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Error with RNA_denovo by zmfowler » Thu, 2022-07-14 05:34 |
0 |
657 |
by zmfowler Thu, 2022-07-14 05:34 |
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Error with recognizing rotamer library atoms by oerbilgin » Fri, 2011-11-04 15:23 |
19 |
28,012 |
by oerbilgin Mon, 2014-04-21 06:47 |
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error with fragment_picker.linuxgccrelease by jiongzhang » Tue, 2012-04-17 09:07 |
3 |
3,430 |
by smlewis Mon, 2014-04-21 06:47 |
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Error with Formatdb of legacy blast when running "install_dependencies.pl"? by Danielsebas » Mon, 2019-09-16 09:30 |
2 |
1,677 |
by Danielsebas Tue, 2019-09-17 01:03 |
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Error with FlexPepDock by aloshbau » Sat, 2013-08-10 11:51 |
1 |
2,599 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error with docking_prepack_protocol while executing the tutorial "Docking Flexible Proteins" by vitoralmeida1808 » Mon, 2023-11-06 09:43 |
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70 |
by vitoralmeida1808 Mon, 2023-11-06 09:43 |
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Error with -patch_selectors by subha » Tue, 2017-06-06 14:40 |
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3,565 |
by subha Fri, 2017-06-09 15:42 |
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Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
4 |
4,950 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
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Error while running Enzyme Design by saxen » Fri, 2011-10-21 15:46 |
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10,630 |
by akpole Mon, 2014-04-21 06:47 |
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Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-' by AG88 » Thu, 2011-11-03 01:25 |
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7,525 |
by weitzner Mon, 2014-04-21 06:47 |
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Error while reading in silent file by rweisse » Mon, 2015-04-20 00:31 |
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5,309 |
by rmoretti Thu, 2015-04-30 16:46 |
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Error when using Remodel on a protein with a chemically bound ligand by Pappmaschee » Wed, 2020-12-16 09:23 |
0 |
1,032 |
by Pappmaschee Wed, 2020-12-16 09:23 |
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Error when trying docking protocol with different ligand by scyphs » Wed, 2020-08-05 04:37 |
2 |
1,439 |
by scyphs Mon, 2020-08-10 08:09 |
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Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
4 |
4,135 |
by dfcoelho Tue, 2017-10-17 11:52 |
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Error when running Remodel with EnzDes constraint file by aloshbau » Wed, 2013-04-17 22:23 |
2 |
3,887 |
by aloshbau Mon, 2014-04-21 06:47 |
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Error when running cluster by aloshbau » Wed, 2013-05-01 20:45 |
3 |
4,489 |
by rmoretti Mon, 2014-04-21 06:47 |
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Error src/core/scoring/MembraneTopology.cc line: 139 by Daniel Hall » Thu, 2017-07-13 04:58 |
6 |
5,581 |
by rmoretti Tue, 2017-07-18 09:00 |
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Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type" by amorin » Mon, 2021-09-27 12:16 |
0 |
828 |
by amorin Mon, 2021-09-27 12:16 |
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error mesages from RosettaDock by AlanZhao » Mon, 2011-03-21 11:42 |
1 |
2,512 |
by smlewis Mon, 2014-04-21 06:47 |
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Error Interface analyser by jrcf » Thu, 2017-06-22 12:55 |
1 |
1,775 |
by smlewis Thu, 2017-06-22 13:31 |
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error in loop remodeling by syntekabio2019 » Wed, 2023-04-05 01:00 |
0 |
285 |
by syntekabio2019 Wed, 2023-04-05 01:01 |
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Error in Loop modeling and other queries by ashu4487 » Wed, 2016-05-11 18:23 |
1 |
2,162 |
by rmoretti Fri, 2016-06-17 10:15 |
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Error in a new docking by jrcf » Wed, 2017-05-17 19:26 |
2 |
4,255 |
by tingting Tue, 2022-03-15 23:55 |
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Error in using “loopmodel” for selective rebuilding by sushreet » Mon, 2014-07-14 11:57 |
2 |
2,788 |
by sushreet Tue, 2014-08-26 13:02 |
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Error Implementing Match Style Constraints by pwging13 » Thu, 2019-12-19 09:53 |
0 |
932 |
by pwging13 Thu, 2019-12-19 09:53 |
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Error from clean_pdb.py by code_Monkey » Mon, 2021-03-01 17:00 |
2 |
1,271 |
by code_Monkey Thu, 2021-03-04 12:14 |
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error extracting PDB from silent from AbinitioRelax with constraints by attesor » Wed, 2017-06-14 04:15 |
2 |
2,245 |
by smlewis Fri, 2017-06-16 07:35 |
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Error encountered during Rosetta loop modeling by max » Tue, 2014-11-25 02:17 |
3 |
3,644 |
by max Thu, 2014-11-27 02:56 |
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Error during single state design by sujigeorge1979 » Sat, 2020-01-18 00:37 |
5 |
4,755 |
by rmoretti Thu, 2020-01-30 15:42 |
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Enzyme design with variable CST blocks possible? by petrikigor » Thu, 2011-10-06 11:24 |
6 |
6,954 |
by petrikigor Mon, 2014-04-21 06:47 |
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Enzyme Design with additional covalent backbone bonds by mwfranklin » Wed, 2016-08-03 10:23 |
1 |
2,405 |
by rmoretti Mon, 2016-09-05 11:29 |
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Enzyme design output silent file and score file by deltag » Fri, 2012-09-28 13:07 |
1 |
2,330 |
by rmoretti Mon, 2014-04-21 06:47 |
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Enzyme Design Not Editing Structure by liuwenxi » Wed, 2022-05-18 10:12 |
0 |
772 |
by liuwenxi Wed, 2022-05-18 10:12 |
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Enzyme Design FlexBB Protocol Bug: DNA/RNA handling by kettner » Fri, 2019-06-14 14:16 |
1 |
1,812 |
by rmoretti Mon, 2019-06-24 13:46 |
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enzyme design and output_matchres_only by petrikigor » Wed, 2012-10-24 18:45 |
6 |
5,084 |
by petrikigor Mon, 2014-04-21 06:47 |
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Enzyme Design - Score File by nwhoppe » Thu, 2016-04-07 15:11 |
1 |
2,080 |
by rmoretti Fri, 2016-04-08 07:39 |
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Enzdes: increase weight of energy term for steric clashes with ligand by eyong123 » Wed, 2015-03-25 09:12 |
5 |
5,880 |
by rmoretti Fri, 2015-04-24 12:02 |
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Enzdes scorefile lost, can I recreate it by eyong123 » Wed, 2015-04-15 05:55 |
2 |
2,607 |
by eyong123 Wed, 2015-04-22 11:33 |
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Enzdes score file discrepancy between generated pdb and scores.out by eyong123 » Wed, 2015-03-25 08:52 |
6 |
7,035 |
by eyong123 Mon, 2015-06-29 04:44 |
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