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Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic Resfile for fixed backbone design
by dyq » Wed, 2009-10-07 10:50
5
4,115 by attesor
Mon, 2014-04-21 06:47
Normal topic P-P docking with ambiguous constraints
by Anouk » Fri, 2013-11-08 11:38
5
5,420 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rotamer Library Generation in Rosetta3
by jcminerlanl » Wed, 2016-11-30 07:34
5
4,114 by rmoretti
Tue, 2021-02-09 11:52
Normal topic BridgeChainsMover
by msardejani » Sun, 2016-08-07 17:32
5
3,798 by smlewis
Tue, 2016-08-30 13:47
Normal topic ignore loops on threading
by fred » Tue, 2014-11-11 11:33
5
4,144 by rmoretti
Tue, 2014-11-18 10:01
Normal topic Typical relax options not applied in relax.mpi.linuxiccrelease??
by David Weis » Mon, 2017-02-27 11:35
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3,496 by rmoretti
Thu, 2017-08-03 09:01
Normal topic Rosetta-foldtree and docking
by tingting » Tue, 2022-03-15 22:49
5
289 by aastha.pal
Mon, 2022-06-27 09:55
Normal topic Relax command for docking purposes and cluster_vs_rmsd command
by Rkfoury » Wed, 2015-04-01 08:48
5
4,498 by rmoretti
Sat, 2015-04-25 10:05
Normal topic Secondary Structure Relax
by ac.research » Sat, 2018-03-17 10:50
5
3,090 by smlewis
Wed, 2018-03-21 08:42
Normal topic Using 2 non-standard residues in one run
by einew » Tue, 2011-03-08 21:24
5
5,312 by einew
Mon, 2014-04-21 06:47
Normal topic Evaluating energies on non-standard rotamer set
by pachecoj » Sat, 2014-07-26 16:27
5
3,855 by pachecoj
Sat, 2014-08-09 06:33
Normal topic Efficient implementation of MPI with protein design programs
by zachdebruine » Thu, 2018-06-28 10:41
5
3,016 by smlewis
Tue, 2018-07-03 11:22
Normal topic P(Res | phi,psi )
by jadolfbr » Thu, 2011-07-21 08:49
5
3,908 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic RosettaMatch
by jtmacd » Wed, 2012-01-11 06:50
5
8,086 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Suppress printing to STDOUT for applications
by tylerborrman » Tue, 2015-11-24 11:37
5
4,095 by code_Monkey
Thu, 2021-03-18 08:03
Normal topic industrial example of ROSETTA modeled protein
by banshee » Sat, 2016-04-23 23:40
5
3,989 by banshee
Tue, 2016-04-26 00:47
Normal topic Make_fragments.pl database
by TiagoGomes » Tue, 2009-10-13 11:31
5
3,038 by matteoferla
Wed, 2021-09-29 01:58
Normal topic nr.fasta
by silvia » Wed, 2013-01-23 10:08
5
9,120 by dgront
Mon, 2014-04-21 06:47
Normal topic scoring models
by peony » Fri, 2013-12-06 02:45
5
4,671 by rmoretti
Mon, 2014-04-21 06:48
Normal topic How to extract specific pdb from silent files
by eunwook » Tue, 2013-05-14 05:29
5
12,675 by nawsad
Mon, 2014-04-21 06:47
Normal topic demos/public/ideal_proteins Segmentation fault
by coomteng@gmail.com » Wed, 2018-03-07 00:15
5
2,822 by rmoretti
Thu, 2018-03-08 07:46
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52
5
4,146 by rmoretti
Tue, 2015-05-05 14:31
Normal topic Cannot use SimpleMetrics
by Vedasheersh » Sun, 2018-06-10 23:38
5
2,682 by smlewis
Tue, 2018-06-12 10:54
Normal topic Error running snugdock
by SenyorDrew » Tue, 2017-03-14 10:00
5
3,415 by SenyorDrew
Wed, 2017-03-29 06:40
Normal topic Robetta fragments and silent.out-file
by masterofpuppets » Wed, 2015-01-07 04:28
5
5,204 by masterofpuppets
Tue, 2015-02-10 03:15
Normal topic Rosetta repacking output
by doranhen » Mon, 2012-12-03 03:44
5
4,745 by doranhen
Mon, 2014-04-21 06:47
Normal topic Is cis-Glycine okay?
by matteoferla » Tue, 2019-11-19 07:26
5
2,058 by matteoferla
Wed, 2019-11-20 02:32
Normal topic Docking double-stranded DNA to a protein
by xpzhang » Tue, 2012-01-31 12:35
5
7,654 by xpzhang
Mon, 2014-04-21 06:47
Normal topic Encouraging better packing in enzyme_design
by linucks » Thu, 2018-03-01 07:05
5
4,033 by linucks
Wed, 2018-04-25 08:50
Normal topic Unrecognized residue Glc
by cgautier » Tue, 2015-03-31 02:20
5
5,001 by rmoretti
Thu, 2015-04-16 10:09
Normal topic Produces a set of rotamers from a given residue
by a-eatemadi@razi... » Tue, 2017-08-15 08:05
5
3,707 by a-eatemadi@razi...
Fri, 2017-09-15 07:45
Normal topic segmentation fault when using design_hpatch scoring function
by rbjacob » Mon, 2018-04-09 11:05
5
2,671 by smlewis
Wed, 2018-04-11 11:45
Normal topic defining interface in interface analyzer
by aa20 » Fri, 2013-09-27 11:08
5
5,400 by smlewis
Mon, 2014-04-21 06:48
Normal topic dun10
by jadolfbr » Thu, 2012-01-19 12:16
5
4,120 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic comparison of energy
by sdh » Mon, 2010-08-16 07:55
5
4,258 by smlewis
Mon, 2014-04-21 06:47
Normal topic modeling residues with covalent ligand attachments
by sid » Fri, 2011-04-15 09:16
5
6,480 by rmoretti
Fri, 2015-07-03 14:02
Normal topic Rosetta Antibody Prepack - Problem HL_A vs. LH_A
by cannond » Fri, 2017-03-03 02:41
5
3,886 by cannond
Wed, 2017-03-08 03:00
Normal topic Scoring Electrostatics
by aroop » Tue, 2012-08-07 11:41
5
4,390 by aroop
Mon, 2014-04-21 06:47
Normal topic calculate RMSD (RNA modelling)
by obdulia » Tue, 2016-07-05 01:58
5
4,584 by obdulia
Wed, 2016-07-13 09:11
Normal topic Loop modeling with ligand in the receptor
by cno » Mon, 2010-12-13 14:07
5
5,363 by smlewis
Mon, 2014-04-21 06:47
Normal topic protocols.jd2.JobDistributor: [ ERROR ]
by johnnytam100 » Thu, 2019-04-11 09:30
5
2,860 by jadolfbr
Tue, 2019-04-16 09:15
Normal topic questions about ab init membrane protein
by albumns » Mon, 2011-02-07 01:09
5
4,319 by zeynep
Mon, 2014-04-21 06:47
Normal topic ab inito memberane error
by albumns » Mon, 2011-02-14 10:58
5
6,745 by albumns
Mon, 2014-04-21 06:47
Normal topic uninstalling or rebuilding rosetta
by rlwoltz » Thu, 2013-04-11 11:45
5
6,277 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic Reading FE from 2PAH
by jadolfbr » Tue, 2013-01-29 16:10
5
5,244 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Relax protocoll short pdb of AAA petide
by knutjbj » Wed, 2011-01-26 05:01
5
3,806 by smlewis
Mon, 2014-04-21 06:47
Normal topic About align hundreds of pdb structures produced by rosseta membrane abinitio
by ritacc18 » Wed, 2013-05-22 12:37
5
5,330 by ssrb
Tue, 2015-09-22 08:35
Normal topic RosettaDock decoys recoring with ZRANK
by cheyuk » Fri, 2014-04-11 01:40
5
6,594 by rmoretti
Thu, 2016-04-28 15:53
Normal topic De novo Protein Design
by ac.research » Sat, 2017-07-15 10:39
5
6,477 by rmoretti
Mon, 2017-08-14 09:06
Normal topic extraction of pdbs from silent.out files on Mac
by pramod » Tue, 2014-01-07 11:43
5
6,037 by rmoretti
Mon, 2014-04-21 06:48
Normal topic combine_silent ERROR: unknown atom_name: CYS SG
by freedman » Mon, 2017-03-06 10:56
5
3,189 by freedman
Mon, 2017-03-06 13:24
Normal topic Interface rmsd calculation Irms
by mahajanr » Wed, 2010-07-07 18:24
5
6,439 by mahajanr
Mon, 2014-04-21 06:47
Normal topic loop modelling/Rosetta 3.4, 3.5
by berk » Tue, 2013-07-02 08:38
5
4,704 by MRH
Mon, 2014-04-21 06:48
Normal topic cluster pdb structures questions
by ritacc18 » Thu, 2013-03-28 19:20
5
5,906 by ritacc18
Mon, 2014-04-21 06:47
Normal topic Computing energy gradients for side chain minimization
by pachecoj » Wed, 2017-03-29 08:03
5
3,503 by pachecoj
Wed, 2017-03-29 12:32
Normal topic Question regarding buried or exposed residues
by qlj » Fri, 2012-11-09 23:43
5
5,322 by qlj
Mon, 2014-04-21 06:47
Normal topic Docking tree issues
by salvatta » Tue, 2018-07-17 05:57
5
3,257 by salvatta
Mon, 2018-09-10 10:04
Normal topic how to use AbinitioRelax.mpi.linuxgccrelease?
by albumns » Mon, 2012-03-26 22:50
5
5,552 by smlewis
Mon, 2014-04-21 06:47
Normal topic low resolution blind protein-protein docking with a ligand
by einew » Sun, 2011-03-20 13:59
5
4,963 by einew
Mon, 2014-04-21 06:47
Normal topic pro_closure energy scoring function
by peony » Sat, 2013-11-16 13:22
5
4,731 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error when using RabD with a nanobody.
by zhangying1990 » Mon, 2018-12-17 04:40
5
2,753 by jadolfbr
Mon, 2019-01-28 08:46
Normal topic loop modelling error on Rosetta3.2 or Rosetta3.3
by exchhattu » Thu, 2011-09-29 03:58
5
4,040 by rpache
Mon, 2014-04-21 06:47
Normal topic de novo RNA loop
by c.ocasion » Sun, 2021-02-14 18:34
5
1,457 by everyday847
Mon, 2021-03-29 20:19
Normal topic Access sigma values for rotamers
by pachecoj » Thu, 2014-05-15 07:10
5
4,332 by rmoretti
Sat, 2014-05-17 14:10
Normal topic is it possible to ab initio only a part of a protein?
by albumns » Sun, 2011-02-13 08:10
6
3,761 by albumns
Mon, 2014-04-21 06:47
Normal topic The design of a helical peptide
by Jacob-kong » Tue, 2012-06-26 06:26
6
6,851 by Jacob-kong
Mon, 2014-04-21 06:47
Normal topic Atomic refinement with fixed ligand
by ahmadkhalifa » Tue, 2018-07-24 10:41
6
3,275 by rmoretti
Mon, 2018-08-20 11:45
Normal topic pdb files in Rosetta format
by zhisheng » Mon, 2011-10-31 08:52
6
6,003 by smlewis
Mon, 2014-04-21 06:47
Normal topic Don't want to output the design structure
by Lindsay » Wed, 2012-05-02 08:02
6
4,433 by Anonymous
Mon, 2014-04-21 06:47
Normal topic No score.sc generated after running flexpepdock.
by monos_morpheus » Sun, 2011-04-10 04:06
6
4,986 by robren
Mon, 2014-04-21 06:47
Normal topic Public subversion / Enzyme design public app
by weallen » Tue, 2009-08-11 20:50
6
4,204 by weallen
Mon, 2014-04-21 06:47
Normal topic Rosetta CM incorrect threading
by ahmadkhalifa » Mon, 2018-08-06 11:09
6
3,498 by rmoretti
Fri, 2018-08-24 11:59
Normal topic Problem With Rosetta3.3 Comparative/Loop Modeling And Constraints
by jurkm » Mon, 2011-09-12 01:01
6
5,078 by jurkm
Mon, 2014-04-21 06:47
Normal topic Rosetta CM - Ignore Sporadic Errors
by Swillard » Wed, 2018-06-13 05:47
6
3,126 by rmoretti
Mon, 2018-11-12 14:29
Normal topic '-norepack_disulf' flag NOT work in Ligand-protein docking ?
by darlintai » Tue, 2011-01-11 22:21
6
4,813 by smlewis
Mon, 2014-04-21 06:47
Normal topic two questions about "Prepare structures for use in Rosetta"
by Anonymous » Wed, 2012-06-06 08:13
6
4,819 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Energy Calculation in Rosetta3.4
by sdg_lab » Thu, 2012-04-12 04:49
6
9,358 by rmoretti
Mon, 2014-04-21 06:47
Normal topic mitochondria protein modeling
by rlwoltz » Fri, 2012-10-26 14:32
6
5,527 by smlewis
Mon, 2014-04-21 06:47
Normal topic modeling loops between domains
by dhorita » Thu, 2009-03-05 14:48
6
4,335 by jarod
Mon, 2014-04-21 06:47
Normal topic what rotamer lib is used in rosetta3.5?
by Lindsay » Thu, 2014-02-06 16:11
6
4,926 by rmoretti
Fri, 2014-03-28 09:03
Normal topic Add a ligand with only one atom (i.e. Zn) to the RosettaCM
by lanselibai » Tue, 2021-06-22 10:28
6
1,140 by rmoretti
Thu, 2021-06-24 12:23
Normal topic how to cluster loop?
by albumns » Wed, 2011-01-05 19:48
6
5,333 by smlewis
Mon, 2014-04-21 06:47
Normal topic optH flag makes hydrogen bond energy scores worse...
by tsjain » Fri, 2012-07-13 14:04
6
5,431 by smlewis
Mon, 2014-04-21 06:47
Normal topic selecting pivot_residue in Backrub for ensemble generation
by rohi » Fri, 2020-08-07 15:41
6
2,345 by matteoferla
Tue, 2020-08-11 10:00
Normal topic Native gives higher (positive) than lowest energy and clustered decoys
by tiagogomes89 » Thu, 2011-06-02 07:19
6
4,433 by rmoretti
Mon, 2014-04-21 06:47
Normal topic membrane ab initio error after montecarlo
by adva » Mon, 2012-12-24 01:43
6
4,849 by tevang
Mon, 2014-04-21 06:47
Normal topic Comparative Modeling databases?
by nitroamos » Wed, 2011-11-23 14:54
6
5,006 by rmoretti
Thu, 2016-04-28 16:15
Normal topic RosettaHoles
by ge0rgekh0ury » Mon, 2012-01-09 09:01
6
5,000 by Anonymous
Mon, 2014-04-21 06:47
Normal topic SASA packing score in Rosetta 3.1
by enoee » Wed, 2010-07-28 01:45
6
5,510 by smlewis
Mon, 2014-04-21 06:47
Normal topic Linker problems when building mini
by assaff » Mon, 2009-10-12 01:07
6
4,135 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fixed bb design with hydrogen bond constraint
by bharat_46010 » Mon, 2012-04-30 22:56
6
4,816 by smlewis
Mon, 2014-04-21 06:47
Normal topic side-chain refinement
by qlj » Wed, 2013-02-20 04:40
6
7,179 by qlj
Mon, 2014-04-21 06:47
Normal topic Error_fragment_generation
by Payal Chatterjee » Fri, 2016-02-12 12:11
6
5,003 by G Mustafa
Fri, 2021-09-10 01:16
Normal topic How to define specific residues in alascan ?
by Park » Mon, 2011-06-13 19:56
6
5,863 by smlewis
Mon, 2014-04-21 06:47
Normal topic calculated ddG_bind converges to zero
by fukamitka » Mon, 2013-06-24 20:32
6
4,703 by fukamitka
Mon, 2014-04-21 06:48
Normal topic Relax structure using Membrane Environment Scoring Function
by anna.duncan » Thu, 2010-02-04 08:01
6
6,796 by jruhym
Mon, 2014-04-21 06:47
Normal topic Give preference to native residue during fixed backbone designing
by tusharranjanmoharana » Mon, 2016-04-04 12:43
6
4,238 by rmoretti
Thu, 2016-04-28 15:19
Normal topic Memory leak when PDB preparation
by Jacky010 » Mon, 2019-05-06 01:28
6
2,782 by Jacky010
Tue, 2019-05-14 01:24
Normal topic AbinitioRelax under different directories without -constant_seed -jran flag
by xpzhang » Wed, 2010-09-15 14:56
6
6,251 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Problem with clustering 1000 centroid pdbs
by doranhen » Sat, 2012-04-28 10:34
6
5,577 by doranhen
Mon, 2014-04-21 06:47
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