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Rosetta 3 - General

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Normal topic Rosetta Design Stalling
by Jhreed » Sun, 2016-03-06 14:38
3
3,578 by rmoretti
Mon, 2016-03-07 14:20
Normal topic Rosetta can't handle symmetric fold and dock for >10-subunit protein?
by myang » Mon, 2011-09-26 11:52
3
3,814 by IAndre
Mon, 2014-04-21 06:47
Normal topic Rosetta documentation
by Ashafix » Sat, 2013-08-31 06:50
3
5,235 by Ashafix
Mon, 2014-04-21 06:48
Normal topic Rosetta remodel on intel Xeon Phi
by pablogalazdavison » Wed, 2016-09-14 15:35
3
3,629 by pablogalazdavison
Thu, 2016-09-15 16:36
Normal topic Your compiler does not have full support for C++ll regex, and therefore can't suport RegEx_based_CDR_Detector/antitody grafting.
by ldx022 » Thu, 2023-03-09 17:03
3
1,377 by ldx022
Sat, 2023-03-11 16:53
Normal topic AnchoredPDBcreator
by spraha » Wed, 2012-03-14 23:34
3
3,742 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop Modeling
by ctaylor » Fri, 2009-12-18 11:42
3
3,657 by ctaylor
Mon, 2014-04-21 06:47
Normal topic NOE constraints with Rosetta 3.1
by mpiuzzi » Wed, 2010-02-24 02:40
3
3,714 by mpiuzzi
Mon, 2014-04-21 06:47
Normal topic I got so many atoms in one residue
by ylwang » Tue, 2020-03-24 04:40
3
2,271 by ylwang
Tue, 2020-03-24 19:35
Normal topic total energy score of the pdb structure
by Lindsay » Tue, 2012-05-01 12:14
4
6,604 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Comparative Modeling Tutorial Script not working
by Srinivas23 » Thu, 2017-09-21 12:00
4
3,645 by Srinivas23
Tue, 2017-10-24 10:58
Normal topic Error when attempting to relax pdb, "flag_input_relax" not found
by Wexter300 » Mon, 2023-01-23 11:32
4
1,415 by Wexter300
Wed, 2023-01-25 12:34
Normal topic solvation
by gw » Wed, 2011-08-31 17:14
4
4,834 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can anyone become a Rosetta developer?
by cossio » Thu, 2015-01-22 05:10
4
6,266 by cossio
Thu, 2015-01-29 11:50
Normal topic Successful installation on OpenSuse11.1 - tests?
by zharmad » Thu, 2010-08-19 00:30
4
4,039 by zharmad
Mon, 2014-04-21 06:47
Normal topic protein ligand docking
by patrickchirdon » Sun, 2018-12-30 15:07
4
3,606 by smlewis
Mon, 2018-12-31 08:58
Normal topic cluster error
by albumns » Thu, 2010-12-16 18:06
4
4,838 by smlewis
Mon, 2014-04-21 06:47
Normal topic Flexible backbone design using PSSM
by kalicuta » Thu, 2012-07-26 13:38
4
5,209 by rmoretti
Mon, 2014-04-21 06:47
Normal topic first try at relaxing a structure
by einew » Wed, 2011-01-05 11:09
4
6,916 by einew
Mon, 2014-04-21 06:47
Normal topic core.scoring.rms_util: WARNING: CA_rmsd out of range...
by mdyini » Sat, 2012-02-25 16:14
4
4,534 by mdyini
Mon, 2014-04-21 06:47
Normal topic manually changing fixbb residue ref energies
by jtmacd » Wed, 2009-11-25 08:43
4
4,307 by jtmacd
Mon, 2014-04-21 06:47
Normal topic UBQ chemically conjugated docking error
by cheyuk » Fri, 2015-09-18 06:57
4
4,859 by cheyuk
Sun, 2015-09-20 02:08
Normal topic computer shuts down during autobulding with rosetta
by intekhab » Tue, 2011-07-19 01:07
4
4,498 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Picking the correct model from a large set of decoys (30,000+)
by brspurri » Thu, 2012-04-26 15:37
4
5,833 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Relax protocol details for Rosetta 3.1
by Matthys » Sun, 2012-01-15 10:00
4
4,707 by rmoretti
Mon, 2014-04-21 06:47
Normal topic rosetta 3.1-how to run parallel tasks?
by wtscrystal » Fri, 2009-11-06 03:23
4
6,173 by lqzhang
Mon, 2014-04-21 06:47
Normal topic [Mover] is not known to the MoverFactory
by Jhreed » Fri, 2016-08-05 12:23
4
4,430 by msardejani
Sun, 2016-08-07 17:49
Normal topic Can I compare binding affinity of different ligands using Rosetta?
by zg148119@ohio.edu » Sun, 2020-12-06 11:30
4
3,679 by nannemdp
Fri, 2021-02-05 06:49
Normal topic pepspec aplication - segmentation fault
by tiagogomes89 » Fri, 2011-09-02 11:18
4
4,422 by smlewis
Mon, 2014-04-21 06:47
Normal topic rs filter for terms in .sc files
by gw » Sat, 2012-08-18 16:20
4
4,905 by gw
Mon, 2014-04-21 06:47
Normal topic problem parsing a THR residue
by decrSTL » Wed, 2019-08-21 12:25
4
3,173 by decrSTL
Tue, 2019-08-27 10:24
Normal topic Introduction or tutorial about RosettaMatch
by kwak » Thu, 2010-10-21 06:37
4
6,627 by kwak
Mon, 2014-04-21 06:47
Normal topic multiple cst files
by logandonaldson » Wed, 2013-03-20 12:16
4
4,702 by logandonaldson
Mon, 2014-04-21 06:47
Normal topic Iterative local rebuilding vs automated structure refinement
by ahmadkhalifa » Fri, 2018-09-14 07:44
4
3,789 by rmoretti
Wed, 2018-11-21 14:11
Normal topic How can move peptide on cleft of enzyme on Flexpepdock?
by phanvy » Thu, 2014-06-05 02:22
4
4,783 by zaldini
Fri, 2015-01-02 05:38
Normal topic Problem with the -dock_ppk flag
by lzx32 » Sat, 2011-04-30 00:21
4
4,856 by lzx32
Mon, 2014-04-21 06:47
Normal topic rosetta 3.1 recognizes PO4 group in dockinglocalrefine option?
by nilkoeg » Thu, 2011-03-10 23:19
4
5,610 by nilkoeg
Mon, 2014-04-21 06:47
Normal topic Random seed confusion
by pardave » Mon, 2012-11-12 09:45
4
4,915 by pardave
Mon, 2014-04-21 06:47
Normal topic RosettaCM rename or swap the order of sequences in your alignment file
by ahmadkhalifa » Fri, 2017-12-22 08:42
4
4,060 by rmoretti
Mon, 2018-01-15 15:24
Normal topic C-term amidation
by tttt » Tue, 2021-03-02 07:46
4
3,208 by tatsiana.bylund
Mon, 2022-01-24 07:58
Normal topic ERROR: Unable to open weights/patch file
by peony » Sun, 2013-11-17 02:49
4
8,161 by rmoretti
Tue, 2019-07-09 10:29
Normal topic Updated publications/details on Rosetta score function?
by nitroamos » Tue, 2009-10-20 19:48
4
5,107 by rmoretti
Mon, 2015-03-30 14:43
Normal topic Unrecognised resiudues when rescoring PDB files generated by enzyme_design under MPI
by linucks » Tue, 2018-02-13 03:41
4
4,629 by linucks
Fri, 2018-02-23 08:08
Normal topic I have a .tab file. How do I extract information from it?
by monos_morpheus » Tue, 2011-02-08 09:30
4
5,522 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic RNA Parameter File
by hdavis9 » Tue, 2010-07-06 11:36
4
4,149 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ab initio structure prediction for long amino acid sequence
by maruhuang » Fri, 2019-08-02 03:38
4
3,307 by maruhuang
Thu, 2019-09-26 18:55
Normal topic Enzyme Design
by bharat_46010 » Tue, 2014-11-25 23:55
4
6,381 by bharat_46010
Mon, 2014-12-15 20:51
Normal topic Symmetric abrelax modeling
by SenyorDrew » Fri, 2011-02-18 10:14
4
4,635 by IAndre
Mon, 2014-04-21 06:47
Normal topic The vall.jul19.2011.gz Database
by ac.research » Fri, 2017-09-01 02:29
4
4,768 by ac.research
Mon, 2017-09-04 16:43
Normal topic Does a negative Rosetta dG imply a favorable process?
by cossio » Tue, 2014-12-09 05:13
4
5,043 by lanselibai
Tue, 2014-12-16 10:48
Normal topic membrane protein packing prediction
by djpittdj » Fri, 2012-01-13 08:55
4
4,378 by pardave
Mon, 2014-04-21 06:47
Normal topic How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches
by zaldini » Fri, 2015-01-02 05:53
4
4,804 by zaldini
Wed, 2015-01-07 20:35
Normal topic How to turn off output of POSE_ENERGIES_TABLE
by lah435 » Tue, 2015-02-03 21:21
4
4,685 by jwillis
Sat, 2015-02-07 20:40
Normal topic Comparative modeling Error: potential mismatch between sequence from alignment  and sequence from PDB!
by nzsuzsanna » Wed, 2016-04-27 05:32
4
5,069 by nzsuzsanna
Fri, 2016-04-29 04:30
Normal topic Antibody Homology Modeling - Antibody vs. Antibody_legacy
by cannond » Tue, 2017-02-14 05:53
4
4,371 by cannond
Wed, 2017-03-01 08:05
Normal topic Identical decoys
by aroop » Tue, 2012-09-25 12:50
4
4,857 by smlewis
Mon, 2014-04-21 06:47
Normal topic Seasons greetings with a Christmas tree shaped protein
by matteoferla » Sun, 2019-12-22 03:37
4
3,203 by matteoferla
Mon, 2019-12-23 07:24
Normal topic How to add uncommon metal elements into Rosetta and make it recognizable?
by JasonIsaac » Thu, 2023-02-09 00:08
4
1,372 by JasonIsaac
Sat, 2023-02-11 00:44
Normal topic RosettaMatch in 3.2
by jtmacd » Mon, 2010-12-20 08:04
4
5,214 by jtmacd
Mon, 2014-04-21 06:47
Normal topic could I add some constrain to the backbone but not completely fix it when relax?
by albumns » Tue, 2010-06-29 05:43
4
4,104 by smlewis
Mon, 2014-04-21 06:47
Normal topic Repeated entries in silent file
by almeida85 » Fri, 2022-08-05 02:52
4
1,647 by almeida85
Thu, 2022-08-11 00:29
Normal topic Fluctuations in I_sc
by eminegenetics » Thu, 2018-09-13 12:07
4
3,416 by eminegenetics
Fri, 2018-09-21 07:42
Normal topic how to keep native structure when do loop modeling
by zlni » Sun, 2009-05-03 10:12
4
4,453 by zlni
Mon, 2014-04-21 06:47
Normal topic Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure
by bharat_46010 » Sun, 2011-01-23 05:22
4
7,738 by dgront
Mon, 2014-04-21 06:47
Normal topic short peptide fragment file generation
by cheyuk » Mon, 2016-07-11 00:04
4
4,910 by smlewis
Wed, 2016-07-13 23:41
Normal topic Difference between score and silent_score when silent files are combined
by justin » Tue, 2012-01-03 06:44
4
4,592 by justin
Mon, 2014-04-21 06:47
Normal topic Error : seqpos <= size()
by phanvy » Sun, 2014-10-05 17:20
4
5,868 by phanvy
Wed, 2014-10-08 01:42
Normal topic how to do cluster after low resolution protein-protein docking?
by albumns » Sat, 2010-11-27 01:17
4
4,651 by albumns
Mon, 2014-04-21 06:47
Normal topic Error while running MakeRotLib
by saxen » Sun, 2016-04-17 22:51
4
4,858 by saxen
Mon, 2016-04-25 10:38
Normal topic Problems installing Rosetta
by S » Fri, 2010-09-03 01:04
4
6,293 by abdullah_ahmed
Mon, 2014-04-21 06:47
Normal topic rosettaScore.py has a typo, I think. Can I fix it in my own copy?
by mdeklotz » Thu, 2018-08-02 15:15
4
3,694 by rmoretti
Fri, 2018-08-03 11:39
Normal topic No values for total score while running Rosetta score file.
by Shweata Maurya » Wed, 2023-02-01 02:05
4
1,476 by Shweata Maurya
Wed, 2023-02-08 03:19
Normal topic [dev] Using h-bonding values in new energy term
by ipetrik_ambry » Wed, 2017-03-01 11:33
4
3,857 by ipetrik_ambry
Thu, 2017-03-02 15:35
Normal topic Fragment files
by exchhattu » Fri, 2009-09-18 01:04
4
4,872 by rmoretti
Tue, 2015-01-06 09:58
Normal topic RosettaCM density guided rebuilding methodology
by ahmadkhalifa » Thu, 2018-08-30 06:45
4
3,503 by ahmadkhalifa
Thu, 2018-08-30 23:09
Normal topic Differentiable Energy Function w/ Centroid Representation
by protein_fan » Sun, 2022-03-20 09:39
4
1,802 by protein_fan
Fri, 2022-04-15 17:41
Normal topic enzdes error
by bo » Tue, 2012-08-21 09:12
4
4,477 by bo
Mon, 2014-04-21 06:47
Normal topic adding NCAA to the N-terminal of RCSB pdb
by ate » Tue, 2021-06-08 08:24
4
2,951 by Subhrodeep Saha
Sat, 2021-06-19 07:17
Normal topic an old question
by albumns » Sun, 2012-10-28 12:14
4
5,042 by rmoretti
Mon, 2014-04-21 06:47
Normal topic I generated a table of images & info of the premade NCAA params in the database
by matteoferla » Sun, 2020-02-16 06:27
4
3,188 by matteoferla
Sat, 2020-03-21 09:14
Normal topic Loop extensions at the end of chains
by japgar » Mon, 2010-07-26 12:35
4
4,391 by japgar
Mon, 2014-04-21 06:47
Normal topic using defined WATERS in PACKING
by ast » Wed, 2012-01-11 09:11
4
4,537 by smlewis
Mon, 2014-04-21 06:47
Normal topic Errors in scorefiles after running Design
by Jhreed » Tue, 2016-03-29 10:25
4
4,187 by smlewis
Wed, 2016-03-30 09:52
Normal topic Error using InterfaceHoles filter
by SenyorDrew » Fri, 2017-04-14 08:55
4
5,015 by SenyorDrew
Mon, 2017-07-24 11:06
Normal topic params file for beta-amino acids
by phonez » Mon, 2021-03-29 18:30
4
2,892 by everyday847
Thu, 2021-04-01 11:59
Normal topic Errors in Interface design  
by Kazu » Thu, 2019-10-31 17:48
4
3,206 by Kazu
Mon, 2020-05-18 10:52
Normal topic unknown constraint function type: AtomPair ?
by jiongzhang » Sun, 2012-07-15 02:13
4
4,651 by jiongzhang
Mon, 2014-04-21 06:47
Normal topic What is virtual atom means in a params file and how to generate it?
by JasonIsaac » Fri, 2022-11-04 04:53
4
1,950 by JasonIsaac
Mon, 2022-11-07 19:15
Normal topic Question regarding Mlipo score
by DanielK » Tue, 2012-05-29 02:04
4
5,072 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ab initio/relax flag file setup
by w107kdk » Fri, 2009-08-28 11:49
4
4,893 by w107kdk
Mon, 2014-04-21 06:47
Normal topic Comparing scores
by renedominik » Mon, 2012-02-27 05:21
4
4,789 by renedominik
Mon, 2014-04-21 06:47
Normal topic What is the total_score that relax outputs?
by cossio » Tue, 2014-12-02 13:50
4
5,310 by cossio
Thu, 2014-12-04 05:41
Normal topic restrain multiple portions of proteins with MinMover
by Karol » Wed, 2016-09-07 08:29
4
5,081 by rmoretti
Thu, 2016-09-08 10:56
Normal topic DesignByCavityProximity: element not expected
by karenjgonzalez » Tue, 2020-01-28 05:16
4
2,973 by karenjgonzalez
Tue, 2020-02-11 08:44
Normal topic postive score models from AbinitioRelax
by xpzhang » Fri, 2012-06-22 12:34
4
4,415 by smlewis
Mon, 2014-04-21 06:47
Normal topic Membrane folding - blastpgp error.
by arthuc01 » Sun, 2012-03-25 14:47
4
5,997 by arthuc01
Mon, 2014-04-21 06:47
Normal topic Ligand conformations file in docking
by rosa » Fri, 2013-07-12 09:21
4
5,598 by rosa
Mon, 2014-04-21 06:48
Normal topic Denovo density corrupted silent file
by ahmadkhalifa » Mon, 2018-04-23 07:30
4
4,047 by ahmadkhalifa
Thu, 2018-04-26 09:11
Normal topic protein protein docking pipeline
by dzhao » Thu, 2012-07-19 06:25
4
6,126 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error when running enzyme_design tutorial
by linucks » Fri, 2017-06-30 12:26
4
3,992 by linucks
Mon, 2017-07-03 09:50
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