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Rosetta 3 - General
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Comparative Modeling Tutorial Script not working by Srinivas23 » Thu, 2017-09-21 12:00 |
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2,734 |
by Srinivas23 Tue, 2017-10-24 10:58 |
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Error when attempting to relax pdb, "flag_input_relax" not found by Wexter300 » Mon, 2023-01-23 11:32 |
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81 |
by Wexter300 Wed, 2023-01-25 12:34 |
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solvation by gw » Wed, 2011-08-31 17:14 |
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4,008 |
by smlewis Mon, 2014-04-21 06:47 |
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Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure by bharat_46010 » Sun, 2011-01-23 05:22 |
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6,586 |
by dgront Mon, 2014-04-21 06:47 |
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Flexible backbone design using PSSM by kalicuta » Thu, 2012-07-26 13:38 |
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4,334 |
by rmoretti Mon, 2014-04-21 06:47 |
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protein ligand docking by patrickchirdon » Sun, 2018-12-30 15:07 |
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2,654 |
by smlewis Mon, 2018-12-31 08:58 |
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Updated publications/details on Rosetta score function? by nitroamos » Tue, 2009-10-20 19:48 |
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4,242 |
by rmoretti Mon, 2015-03-30 14:43 |
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UBQ chemically conjugated docking error by cheyuk » Fri, 2015-09-18 06:57 |
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3,936 |
by cheyuk Sun, 2015-09-20 02:08 |
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core.scoring.rms_util: WARNING: CA_rmsd out of range... by mdyini » Sat, 2012-02-25 16:14 |
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3,775 |
by mdyini Mon, 2014-04-21 06:47 |
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how to do cluster after low resolution protein-protein docking? by albumns » Sat, 2010-11-27 01:17 |
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3,899 |
by albumns Mon, 2014-04-21 06:47 |
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Problems installing Rosetta by S » Fri, 2010-09-03 01:04 |
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5,508 |
by abdullah_ahmed Mon, 2014-04-21 06:47 |
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Picking the correct model from a large set of decoys (30,000+) by brspurri » Thu, 2012-04-26 15:37 |
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4,961 |
by rmoretti Mon, 2014-04-21 06:47 |
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computer shuts down during autobulding with rosetta by intekhab » Tue, 2011-07-19 01:07 |
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3,748 |
by rmoretti Mon, 2014-04-21 06:47 |
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Relax protocol details for Rosetta 3.1 by Matthys » Sun, 2012-01-15 10:00 |
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3,840 |
by rmoretti Mon, 2014-04-21 06:47 |
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[Mover] is not known to the MoverFactory by Jhreed » Fri, 2016-08-05 12:23 |
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3,546 |
by msardejani Sun, 2016-08-07 17:49 |
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Can I compare binding affinity of different ligands using Rosetta? by zg148119@ohio.edu » Sun, 2020-12-06 11:30 |
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2,315 |
by nannemdp Fri, 2021-02-05 06:49 |
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pepspec aplication - segmentation fault by tiagogomes89 » Fri, 2011-09-02 11:18 |
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3,666 |
by smlewis Mon, 2014-04-21 06:47 |
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Iterative local rebuilding vs automated structure refinement by ahmadkhalifa » Fri, 2018-09-14 07:44 |
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2,798 |
by rmoretti Wed, 2018-11-21 14:11 |
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RNA Parameter File by hdavis9 » Tue, 2010-07-06 11:36 |
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3,362 |
by smlewis Mon, 2014-04-21 06:47 |
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rs filter for terms in .sc files by gw » Sat, 2012-08-18 16:20 |
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4,123 |
by gw Mon, 2014-04-21 06:47 |
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problem parsing a THR residue by decrSTL » Wed, 2019-08-21 12:25 |
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2,174 |
by decrSTL Tue, 2019-08-27 10:24 |
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multiple cst files by logandonaldson » Wed, 2013-03-20 12:16 |
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3,820 |
by logandonaldson Mon, 2014-04-21 06:47 |
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Problem with the -dock_ppk flag by lzx32 » Sat, 2011-04-30 00:21 |
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4,143 |
by lzx32 Mon, 2014-04-21 06:47 |
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rosetta 3.1 recognizes PO4 group in dockinglocalrefine option? by nilkoeg » Thu, 2011-03-10 23:19 |
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4,736 |
by nilkoeg Mon, 2014-04-21 06:47 |
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Random seed confusion by pardave » Mon, 2012-11-12 09:45 |
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4,085 |
by pardave Mon, 2014-04-21 06:47 |
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RosettaCM rename or swap the order of sequences in your alignment file by ahmadkhalifa » Fri, 2017-12-22 08:42 |
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3,021 |
by rmoretti Mon, 2018-01-15 15:24 |
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C-term amidation by tttt » Tue, 2021-03-02 07:46 |
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1,916 |
by tatsiana.bylund Mon, 2022-01-24 07:58 |
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how to keep native structure when do loop modeling by zlni » Sun, 2009-05-03 10:12 |
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3,569 |
by zlni Mon, 2014-04-21 06:47 |
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How can move peptide on cleft of enzyme on Flexpepdock? by phanvy » Thu, 2014-06-05 02:22 |
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3,877 |
by zaldini Fri, 2015-01-02 05:38 |
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ERROR: Unable to open weights/patch file by peony » Sun, 2013-11-17 02:49 |
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6,706 |
by rmoretti Tue, 2019-07-09 10:29 |
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Unrecognised resiudues when rescoring PDB files generated by enzyme_design under MPI by linucks » Tue, 2018-02-13 03:41 |
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3,285 |
by linucks Fri, 2018-02-23 08:08 |
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could I add some constrain to the backbone but not completely fix it when relax? by albumns » Tue, 2010-06-29 05:43 |
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3,260 |
by smlewis Mon, 2014-04-21 06:47 |
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Ab initio structure prediction for long amino acid sequence by maruhuang » Fri, 2019-08-02 03:38 |
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2,220 |
by maruhuang Thu, 2019-09-26 18:55 |
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Enzyme Design by bharat_46010 » Tue, 2014-11-25 23:55 |
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5,179 |
by bharat_46010 Mon, 2014-12-15 20:51 |
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Fragment files by exchhattu » Fri, 2009-09-18 01:04 |
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4,029 |
by rmoretti Tue, 2015-01-06 09:58 |
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The vall.jul19.2011.gz Database by ac.research » Fri, 2017-09-01 02:29 |
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3,742 |
by ac.research Mon, 2017-09-04 16:43 |
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Does a negative Rosetta dG imply a favorable process? by cossio » Tue, 2014-12-09 05:13 |
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3,954 |
by lanselibai Tue, 2014-12-16 10:48 |
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membrane protein packing prediction by djpittdj » Fri, 2012-01-13 08:55 |
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3,646 |
by pardave Mon, 2014-04-21 06:47 |
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How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches by zaldini » Fri, 2015-01-02 05:53 |
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3,897 |
by zaldini Wed, 2015-01-07 20:35 |
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error about 'std::bad_alloc' during running by zhisheng » Mon, 2011-01-10 09:45 |
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10,476 |
by smlewis Mon, 2014-04-21 06:47 |
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How to turn off output of POSE_ENERGIES_TABLE by lah435 » Tue, 2015-02-03 21:21 |
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3,793 |
by jwillis Sat, 2015-02-07 20:40 |
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Comparative modeling Error: potential mismatch between sequence from alignment and sequence from PDB! by nzsuzsanna » Wed, 2016-04-27 05:32 |
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4,060 |
by nzsuzsanna Fri, 2016-04-29 04:30 |
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Seasons greetings with a Christmas tree shaped protein by matteoferla » Sun, 2019-12-22 03:37 |
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2,256 |
by matteoferla Mon, 2019-12-23 07:24 |
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Antibody Homology Modeling - Antibody vs. Antibody_legacy by cannond » Tue, 2017-02-14 05:53 |
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3,438 |
by cannond Wed, 2017-03-01 08:05 |
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Identical decoys by aroop » Tue, 2012-09-25 12:50 |
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4,065 |
by smlewis Mon, 2014-04-21 06:47 |
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extraction of pdbs from silent.out files on Mac by pramod » Tue, 2014-01-07 11:43 |
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6,480 |
by rmoretti Mon, 2014-04-21 06:48 |
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combine_silent ERROR: unknown atom_name: CYS SG by freedman » Mon, 2017-03-06 10:56 |
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3,552 |
by freedman Mon, 2017-03-06 13:24 |
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cluster pdb structures questions by ritacc18 » Thu, 2013-03-28 19:20 |
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6,316 |
by ritacc18 Mon, 2014-04-21 06:47 |
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Computing energy gradients for side chain minimization by pachecoj » Wed, 2017-03-29 08:03 |
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3,888 |
by pachecoj Wed, 2017-03-29 12:32 |
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Question regarding buried or exposed residues by qlj » Fri, 2012-11-09 23:43 |
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5,784 |
by qlj Mon, 2014-04-21 06:47 |
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loop modelling/Rosetta 3.4, 3.5 by berk » Tue, 2013-07-02 08:38 |
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5,081 |
by MRH Mon, 2014-04-21 06:48 |
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low resolution blind protein-protein docking with a ligand by einew » Sun, 2011-03-20 13:59 |
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5,270 |
by einew Mon, 2014-04-21 06:47 |
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pro_closure energy scoring function by peony » Sat, 2013-11-16 13:22 |
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5,122 |
by rmoretti Mon, 2014-04-21 06:48 |
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Docking tree issues by salvatta » Tue, 2018-07-17 05:57 |
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3,832 |
by salvatta Mon, 2018-09-10 10:04 |
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How to handle/retain Metals (Zn, Ca) inside the Protein? by aniyaz » Wed, 2023-01-11 03:21 |
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204 |
by aniyaz Thu, 2023-01-19 06:26 |
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how to use AbinitioRelax.mpi.linuxgccrelease? by albumns » Mon, 2012-03-26 22:50 |
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5,889 |
by smlewis Mon, 2014-04-21 06:47 |
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Error when using RabD with a nanobody. by zhangying1990 » Mon, 2018-12-17 04:40 |
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3,182 |
by jadolfbr Mon, 2019-01-28 08:46 |
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loop modelling error on Rosetta3.2 or Rosetta3.3 by exchhattu » Thu, 2011-09-29 03:58 |
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4,406 |
by rpache Mon, 2014-04-21 06:47 |
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de novo RNA loop by c.ocasion » Sun, 2021-02-14 18:34 |
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1,887 |
by everyday847 Mon, 2021-03-29 20:19 |
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Access sigma values for rotamers by pachecoj » Thu, 2014-05-15 07:10 |
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4,727 |
by rmoretti Sat, 2014-05-17 14:10 |
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Chain specific flags by helenah » Mon, 2020-10-19 03:31 |
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2,119 |
by rmoretti Fri, 2020-11-06 08:04 |
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rosetta_scripts_BOGUS coords warning message by Karol » Tue, 2016-12-13 02:35 |
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4,521 |
by Karol Thu, 2016-12-15 01:35 |
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Problem with undetected lower and upper terminus variants for new polymer by Martin Floor » Sat, 2022-06-11 06:51 |
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777 |
by matteoferla Fri, 2022-07-01 13:49 |
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comparison of energy by sdh » Mon, 2010-08-16 07:55 |
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4,591 |
by smlewis Mon, 2014-04-21 06:47 |
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Abinitio Calculations - typical parameters by vamsi » Thu, 2010-11-11 07:06 |
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5,169 |
by smlewis Mon, 2014-04-21 06:47 |
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match_dspos1 and other matcher options by petrikigor » Sat, 2012-10-20 09:22 |
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4,756 |
by rmoretti Mon, 2014-04-21 06:47 |
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Problems with disulphide bonds during KIC by Loki01 » Tue, 2017-11-28 03:11 |
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3,512 |
by Loki01 Thu, 2017-12-14 06:20 |
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Rotate MOVER by gw » Wed, 2012-08-15 12:09 |
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4,663 |
by glemmon Mon, 2014-04-21 06:47 |
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protein binding energy problem by Lindsay » Thu, 2014-04-17 23:10 |
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5,032 |
by jadolfbr Mon, 2014-04-21 07:30 |
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Error when running "plot_LHOC.py" by Sunyp_IM » Sun, 2017-08-13 05:54 |
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3,489 |
by smlewis Wed, 2017-08-16 08:30 |
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P-P docking with ambiguous constraints by Anouk » Fri, 2013-11-08 11:38 |
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5,854 |
by rmoretti Mon, 2014-04-21 06:48 |
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Rotamer Library Generation in Rosetta3 by jcminerlanl » Wed, 2016-11-30 07:34 |
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4,728 |
by rmoretti Tue, 2021-02-09 11:52 |
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BridgeChainsMover by msardejani » Sun, 2016-08-07 17:32 |
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4,211 |
by smlewis Tue, 2016-08-30 13:47 |
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Rosetta-foldtree and docking by tingting » Tue, 2022-03-15 22:49 |
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870 |
by aastha.pal Mon, 2022-06-27 09:55 |
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Relax command for docking purposes and cluster_vs_rmsd command by Rkfoury » Wed, 2015-04-01 08:48 |
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4,877 |
by rmoretti Sat, 2015-04-25 10:05 |
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ignore loops on threading by fred » Tue, 2014-11-11 11:33 |
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4,498 |
by rmoretti Tue, 2014-11-18 10:01 |
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Typical relax options not applied in relax.mpi.linuxiccrelease?? by David Weis » Mon, 2017-02-27 11:35 |
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3,911 |
by rmoretti Thu, 2017-08-03 09:01 |
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Using 2 non-standard residues in one run by einew » Tue, 2011-03-08 21:24 |
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5,715 |
by einew Mon, 2014-04-21 06:47 |
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Evaluating energies on non-standard rotamer set by pachecoj » Sat, 2014-07-26 16:27 |
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4,224 |
by pachecoj Sat, 2014-08-09 06:33 |
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Interface rmsd calculation Irms by mahajanr » Wed, 2010-07-07 18:24 |
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6,893 |
by mahajanr Mon, 2014-04-21 06:47 |
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Efficient implementation of MPI with protein design programs by zachdebruine » Thu, 2018-06-28 10:41 |
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3,453 |
by smlewis Tue, 2018-07-03 11:22 |
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Secondary Structure Relax by ac.research » Sat, 2018-03-17 10:50 |
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3,572 |
by smlewis Wed, 2018-03-21 08:42 |
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RosettaMatch by jtmacd » Wed, 2012-01-11 06:50 |
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8,727 |
by jtmacd Mon, 2014-04-21 06:47 |
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Suppress printing to STDOUT for applications by tylerborrman » Tue, 2015-11-24 11:37 |
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4,592 |
by code_Monkey Thu, 2021-03-18 08:03 |
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P(Res | phi,psi ) by jadolfbr » Thu, 2011-07-21 08:49 |
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4,244 |
by jadolfbr Mon, 2014-04-21 06:47 |
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industrial example of ROSETTA modeled protein by banshee » Sat, 2016-04-23 23:40 |
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4,399 |
by banshee Tue, 2016-04-26 00:47 |
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How to extract specific pdb from silent files by eunwook » Tue, 2013-05-14 05:29 |
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13,644 |
by nawsad Mon, 2014-04-21 06:47 |
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nr.fasta by silvia » Wed, 2013-01-23 10:08 |
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9,677 |
by dgront Mon, 2014-04-21 06:47 |
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scoring models by peony » Fri, 2013-12-06 02:45 |
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5,046 |
by rmoretti Mon, 2014-04-21 06:48 |
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Minimization Issue: Coarse Graining to All atom modeling by abolia » Tue, 2015-04-28 10:52 |
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4,586 |
by rmoretti Tue, 2015-05-05 14:31 |
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Cannot use SimpleMetrics by Vedasheersh » Sun, 2018-06-10 23:38 |
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3,089 |
by smlewis Tue, 2018-06-12 10:54 |
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demos/public/ideal_proteins Segmentation fault by coomteng@gmail.com » Wed, 2018-03-07 00:15 |
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3,208 |
by rmoretti Thu, 2018-03-08 07:46 |
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Error running snugdock by SenyorDrew » Tue, 2017-03-14 10:00 |
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3,840 |
by SenyorDrew Wed, 2017-03-29 06:40 |
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Robetta fragments and silent.out-file by masterofpuppets » Wed, 2015-01-07 04:28 |
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5,586 |
by masterofpuppets Tue, 2015-02-10 03:15 |
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Rosetta repacking output by doranhen » Mon, 2012-12-03 03:44 |
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5,173 |
by doranhen Mon, 2014-04-21 06:47 |
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Modeling only part of the protein structure using ROSETTA by qiongwu » Fri, 2009-05-29 09:08 |
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4,177 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking double-stranded DNA to a protein by xpzhang » Tue, 2012-01-31 12:35 |
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8,057 |
by xpzhang Mon, 2014-04-21 06:47 |
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Is cis-Glycine okay? by matteoferla » Tue, 2019-11-19 07:26 |
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2,554 |
by matteoferla Wed, 2019-11-20 02:32 |
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Unrecognized residue Glc by cgautier » Tue, 2015-03-31 02:20 |
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5,453 |
by rmoretti Thu, 2015-04-16 10:09 |
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Encouraging better packing in enzyme_design by linucks » Thu, 2018-03-01 07:05 |
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4,539 |
by linucks Wed, 2018-04-25 08:50 |
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