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Rosetta 3 - General
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Identical decoys by aroop » Tue, 2012-09-25 12:50 |
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4,369 |
by smlewis Mon, 2014-04-21 06:47 |
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Seasons greetings with a Christmas tree shaped protein by matteoferla » Sun, 2019-12-22 03:37 |
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2,595 |
by matteoferla Mon, 2019-12-23 07:24 |
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How to add uncommon metal elements into Rosetta and make it recognizable? by JasonIsaac » Thu, 2023-02-09 00:08 |
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505 |
by JasonIsaac Sat, 2023-02-11 00:44 |
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Antibody Homology Modeling - Antibody vs. Antibody_legacy by cannond » Tue, 2017-02-14 05:53 |
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3,802 |
by cannond Wed, 2017-03-01 08:05 |
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Repeated entries in silent file by almeida85 » Fri, 2022-08-05 02:52 |
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905 |
by almeida85 Thu, 2022-08-11 00:29 |
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Fluctuations in I_sc by eminegenetics » Thu, 2018-09-13 12:07 |
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2,879 |
by eminegenetics Fri, 2018-09-21 07:42 |
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I have a .tab file. How do I extract information from it? by monos_morpheus » Tue, 2011-02-08 09:30 |
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4,946 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Difference between score and silent_score when silent files are combined by justin » Tue, 2012-01-03 06:44 |
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4,112 |
by justin Mon, 2014-04-21 06:47 |
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Symmetric abrelax modeling by SenyorDrew » Fri, 2011-02-18 10:14 |
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4,188 |
by IAndre Mon, 2014-04-21 06:47 |
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rosetta 3.1-how to run parallel tasks? by wtscrystal » Fri, 2009-11-06 03:23 |
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5,481 |
by lqzhang Mon, 2014-04-21 06:47 |
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short peptide fragment file generation by cheyuk » Mon, 2016-07-11 00:04 |
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4,302 |
by smlewis Wed, 2016-07-13 23:41 |
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Error while running MakeRotLib by saxen » Sun, 2016-04-17 22:51 |
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4,268 |
by saxen Mon, 2016-04-25 10:38 |
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Error : seqpos <= size() by phanvy » Sun, 2014-10-05 17:20 |
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5,290 |
by phanvy Wed, 2014-10-08 01:42 |
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rosettaScore.py has a typo, I think. Can I fix it in my own copy? by mdeklotz » Thu, 2018-08-02 15:15 |
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3,107 |
by rmoretti Fri, 2018-08-03 11:39 |
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No values for total score while running Rosetta score file. by Shweata Maurya » Wed, 2023-02-01 02:05 |
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576 |
by Shweata Maurya Wed, 2023-02-08 03:19 |
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RosettaCM density guided rebuilding methodology by ahmadkhalifa » Thu, 2018-08-30 06:45 |
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2,907 |
by ahmadkhalifa Thu, 2018-08-30 23:09 |
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Differentiable Energy Function w/ Centroid Representation by protein_fan » Sun, 2022-03-20 09:39 |
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1,193 |
by protein_fan Fri, 2022-04-15 17:41 |
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[dev] Using h-bonding values in new energy term by ipetrik_ambry » Wed, 2017-03-01 11:33 |
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3,322 |
by ipetrik_ambry Thu, 2017-03-02 15:35 |
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adding NCAA to the N-terminal of RCSB pdb by ate » Tue, 2021-06-08 08:24 |
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2,114 |
by Subhrodeep Saha Sat, 2021-06-19 07:17 |
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an old question by albumns » Sun, 2012-10-28 12:14 |
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4,463 |
by rmoretti Mon, 2014-04-21 06:47 |
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I generated a table of images & info of the premade NCAA params in the database by matteoferla » Sun, 2020-02-16 06:27 |
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2,584 |
by matteoferla Sat, 2020-03-21 09:14 |
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Updated publications/details on Rosetta score function? by nitroamos » Tue, 2009-10-20 19:48 |
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4,563 |
by rmoretti Mon, 2015-03-30 14:43 |
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RosettaMatch in 3.2 by jtmacd » Mon, 2010-12-20 08:04 |
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4,724 |
by jtmacd Mon, 2014-04-21 06:47 |
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enzdes error by bo » Tue, 2012-08-21 09:12 |
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4,025 |
by bo Mon, 2014-04-21 06:47 |
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using defined WATERS in PACKING by ast » Wed, 2012-01-11 09:11 |
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4,009 |
by smlewis Mon, 2014-04-21 06:47 |
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Errors in scorefiles after running Design by Jhreed » Tue, 2016-03-29 10:25 |
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3,604 |
by smlewis Wed, 2016-03-30 09:52 |
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Error using InterfaceHoles filter by SenyorDrew » Fri, 2017-04-14 08:55 |
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4,120 |
by SenyorDrew Mon, 2017-07-24 11:06 |
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Errors in Interface design by Kazu » Thu, 2019-10-31 17:48 |
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2,609 |
by Kazu Mon, 2020-05-18 10:52 |
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Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure by bharat_46010 » Sun, 2011-01-23 05:22 |
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7,035 |
by dgront Mon, 2014-04-21 06:47 |
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unknown constraint function type: AtomPair ? by jiongzhang » Sun, 2012-07-15 02:13 |
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4,158 |
by jiongzhang Mon, 2014-04-21 06:47 |
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params file for beta-amino acids by phonez » Mon, 2021-03-29 18:30 |
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2,116 |
by everyday847 Thu, 2021-04-01 11:59 |
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how to do cluster after low resolution protein-protein docking? by albumns » Sat, 2010-11-27 01:17 |
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4,190 |
by albumns Mon, 2014-04-21 06:47 |
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What is virtual atom means in a params file and how to generate it？ by JasonIsaac » Fri, 2022-11-04 04:53 |
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844 |
by JasonIsaac Mon, 2022-11-07 19:15 |
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Question regarding Mlipo score by DanielK » Tue, 2012-05-29 02:04 |
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4,484 |
by smlewis Mon, 2014-04-21 06:47 |
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What is the total_score that relax outputs? by cossio » Tue, 2014-12-02 13:50 |
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4,665 |
by cossio Thu, 2014-12-04 05:41 |
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restrain multiple portions of proteins with MinMover by Karol » Wed, 2016-09-07 08:29 |
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4,477 |
by rmoretti Thu, 2016-09-08 10:56 |
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DesignByCavityProximity: element not expected by karenjgonzalez » Tue, 2020-01-28 05:16 |
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2,411 |
by karenjgonzalez Tue, 2020-02-11 08:44 |
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Comparing scores by renedominik » Mon, 2012-02-27 05:21 |
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4,308 |
by renedominik Mon, 2014-04-21 06:47 |
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Problems installing Rosetta by S » Fri, 2010-09-03 01:04 |
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5,823 |
by abdullah_ahmed Mon, 2014-04-21 06:47 |
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postive score models from AbinitioRelax by xpzhang » Fri, 2012-06-22 12:34 |
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3,918 |
by smlewis Mon, 2014-04-21 06:47 |
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Membrane folding - blastpgp error. by arthuc01 » Sun, 2012-03-25 14:47 |
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5,450 |
by arthuc01 Mon, 2014-04-21 06:47 |
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Ligand conformations file in docking by rosa » Fri, 2013-07-12 09:21 |
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5,020 |
by rosa Mon, 2014-04-21 06:48 |
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Denovo density corrupted silent file by ahmadkhalifa » Mon, 2018-04-23 07:30 |
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3,284 |
by ahmadkhalifa Thu, 2018-04-26 09:11 |
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protein protein docking pipeline by dzhao » Thu, 2012-07-19 06:25 |
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5,568 |
by smlewis Mon, 2014-04-21 06:47 |
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Error when running enzyme_design tutorial by linucks » Fri, 2017-06-30 12:26 |
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3,436 |
by linucks Mon, 2017-07-03 09:50 |
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how to keep native structure when do loop modeling by zlni » Sun, 2009-05-03 10:12 |
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3,904 |
by zlni Mon, 2014-04-21 06:47 |
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computer specifications by rlwoltz » Tue, 2012-10-09 16:11 |
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5,788 |
by rlwoltz Mon, 2014-04-21 06:47 |
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RNA Parameter File by hdavis9 » Tue, 2010-07-06 11:36 |
4 |
3,663 |
by smlewis Mon, 2014-04-21 06:47 |
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Does Rosetta recognise OXT atom type in PDB.? by monos_morpheus » Mon, 2011-04-11 23:57 |
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5,118 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Energy calculation for protein design by Filipe » Sat, 2011-11-26 15:01 |
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6,932 |
by Filipe Mon, 2014-04-21 06:47 |
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Suppressing Rosetta output, flag for that? by msellers » Tue, 2011-04-26 11:18 |
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4,882 |
by smlewis Mon, 2014-04-21 06:47 |
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How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)? by lanselibai » Thu, 2014-12-04 13:16 |
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5,900 |
by lanselibai Fri, 2014-12-12 10:27 |
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a question about loop refinement by albumns » Fri, 2012-03-02 09:38 |
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5,172 |
by albumns Mon, 2014-04-21 06:47 |
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Discarding atoms for fixbb by Jacob-kong » Tue, 2012-06-26 06:23 |
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5,018 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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Give diferent chain information for a single sequence (comparative modeling) by Martin Floor » Tue, 2013-04-02 08:59 |
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4,374 |
by Martin Floor Mon, 2014-04-21 06:47 |
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span and frags filefor multichain transmembrane protein by zhiguang » Wed, 2016-10-26 13:28 |
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3,657 |
by zhiguang Tue, 2016-11-15 12:27 |
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Error when attempting to relax pdb, "flag_input_relax" not found by Wexter300 » Mon, 2023-01-23 11:32 |
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490 |
by Wexter300 Wed, 2023-01-25 12:34 |
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solvation by gw » Wed, 2011-08-31 17:14 |
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4,334 |
by smlewis Mon, 2014-04-21 06:47 |
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Fragment files by exchhattu » Fri, 2009-09-18 01:04 |
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4,360 |
by rmoretti Tue, 2015-01-06 09:58 |
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Can anyone become a Rosetta developer? by cossio » Thu, 2015-01-22 05:10 |
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5,669 |
by cossio Thu, 2015-01-29 11:50 |
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total energy score of the pdb structure by Lindsay » Tue, 2012-05-01 12:14 |
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6,048 |
by Lindsay Mon, 2014-04-21 06:47 |
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Comparative Modeling Tutorial Script not working by Srinivas23 » Thu, 2017-09-21 12:00 |
4 |
3,037 |
by Srinivas23 Tue, 2017-10-24 10:58 |
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could I add some constrain to the backbone but not completely fix it when relax? by albumns » Tue, 2010-06-29 05:43 |
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3,600 |
by smlewis Mon, 2014-04-21 06:47 |
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Flexible backbone design using PSSM by kalicuta » Thu, 2012-07-26 13:38 |
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4,662 |
by rmoretti Mon, 2014-04-21 06:47 |
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protein ligand docking by patrickchirdon » Sun, 2018-12-30 15:07 |
4 |
3,012 |
by smlewis Mon, 2018-12-31 08:58 |
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UBQ chemically conjugated docking error by cheyuk » Fri, 2015-09-18 06:57 |
4 |
4,258 |
by cheyuk Sun, 2015-09-20 02:08 |
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core.scoring.rms_util: WARNING: CA_rmsd out of range... by mdyini » Sat, 2012-02-25 16:14 |
4 |
4,070 |
by mdyini Mon, 2014-04-21 06:47 |
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Picking the correct model from a large set of decoys (30,000+) by brspurri » Thu, 2012-04-26 15:37 |
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5,278 |
by rmoretti Mon, 2014-04-21 06:47 |
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computer shuts down during autobulding with rosetta by intekhab » Tue, 2011-07-19 01:07 |
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4,055 |
by rmoretti Mon, 2014-04-21 06:47 |
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Ab initio/relax flag file setup by w107kdk » Fri, 2009-08-28 11:49 |
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4,303 |
by w107kdk Mon, 2014-04-21 06:47 |
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Relax protocol details for Rosetta 3.1 by Matthys » Sun, 2012-01-15 10:00 |
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4,181 |
by rmoretti Mon, 2014-04-21 06:47 |
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error about 'std::bad_alloc' during running by zhisheng » Mon, 2011-01-10 09:45 |
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10,928 |
by smlewis Mon, 2014-04-21 06:47 |
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[Mover] is not known to the MoverFactory by Jhreed » Fri, 2016-08-05 12:23 |
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3,870 |
by msardejani Sun, 2016-08-07 17:49 |
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Can I compare binding affinity of different ligands using Rosetta? by zg148119@ohio.edu » Sun, 2020-12-06 11:30 |
4 |
2,789 |
by nannemdp Fri, 2021-02-05 06:49 |
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pepspec aplication - segmentation fault by tiagogomes89 » Fri, 2011-09-02 11:18 |
4 |
3,961 |
by smlewis Mon, 2014-04-21 06:47 |
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Unrecognized residue Glc by cgautier » Tue, 2015-03-31 02:20 |
5 |
5,902 |
by rmoretti Thu, 2015-04-16 10:09 |
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Encouraging better packing in enzyme_design by linucks » Thu, 2018-03-01 07:05 |
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5,159 |
by linucks Wed, 2018-04-25 08:50 |
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Produces a set of rotamers from a given residue by a-eatemadi@razi... » Tue, 2017-08-15 08:05 |
5 |
4,829 |
by a-eatemadi@razi... Fri, 2017-09-15 07:45 |
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segmentation fault when using design_hpatch scoring function by rbjacob » Mon, 2018-04-09 11:05 |
5 |
3,470 |
by smlewis Wed, 2018-04-11 11:45 |
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defining interface in interface analyzer by aa20 » Fri, 2013-09-27 11:08 |
5 |
6,492 |
by smlewis Mon, 2014-04-21 06:48 |
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dun10 by jadolfbr » Thu, 2012-01-19 12:16 |
5 |
4,796 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Scoring Electrostatics by aroop » Tue, 2012-08-07 11:41 |
5 |
5,178 |
by aroop Mon, 2014-04-21 06:47 |
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modeling residues with covalent ligand attachments by sid » Fri, 2011-04-15 09:16 |
5 |
7,350 |
by rmoretti Fri, 2015-07-03 14:02 |
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Rosetta Antibody Prepack - Problem HL_A vs. LH_A by cannond » Fri, 2017-03-03 02:41 |
5 |
4,868 |
by cannond Wed, 2017-03-08 03:00 |
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protocols.jd2.JobDistributor: [ ERROR ] by johnnytam100 » Thu, 2019-04-11 09:30 |
5 |
4,110 |
by jadolfbr Tue, 2019-04-16 09:15 |
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calculate RMSD (RNA modelling) by obdulia » Tue, 2016-07-05 01:58 |
5 |
5,572 |
by obdulia Wed, 2016-07-13 09:11 |
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uninstalling or rebuilding rosetta by rlwoltz » Thu, 2013-04-11 11:45 |
5 |
7,303 |
by rlwoltz Mon, 2014-04-21 06:47 |
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Abinitio Calculations - typical parameters by vamsi » Thu, 2010-11-11 07:06 |
5 |
5,533 |
by smlewis Mon, 2014-04-21 06:47 |
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comparison of energy by sdh » Mon, 2010-08-16 07:55 |
5 |
5,049 |
by smlewis Mon, 2014-04-21 06:47 |
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About align hundreds of pdb structures produced by rosseta membrane abinitio by ritacc18 » Wed, 2013-05-22 12:37 |
5 |
6,202 |
by ssrb Tue, 2015-09-22 08:35 |
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RosettaDock decoys recoring with ZRANK by cheyuk » Fri, 2014-04-11 01:40 |
5 |
7,483 |
by rmoretti Thu, 2016-04-28 15:53 |
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De novo Protein Design by ac.research » Sat, 2017-07-15 10:39 |
5 |
7,846 |
by rmoretti Mon, 2017-08-14 09:06 |
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Reading FE from 2PAH by jadolfbr » Tue, 2013-01-29 16:10 |
5 |
6,020 |
by rmoretti Mon, 2014-04-21 06:47 |
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extraction of pdbs from silent.out files on Mac by pramod » Tue, 2014-01-07 11:43 |
5 |
6,902 |
by rmoretti Mon, 2014-04-21 06:48 |
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combine_silent ERROR: unknown atom_name: CYS SG by freedman » Mon, 2017-03-06 10:56 |
5 |
3,911 |
by freedman Mon, 2017-03-06 13:24 |
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cluster pdb structures questions by ritacc18 » Thu, 2013-03-28 19:20 |
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6,731 |
by ritacc18 Mon, 2014-04-21 06:47 |
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Computing energy gradients for side chain minimization by pachecoj » Wed, 2017-03-29 08:03 |
5 |
4,274 |
by pachecoj Wed, 2017-03-29 12:32 |
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Question regarding buried or exposed residues by qlj » Fri, 2012-11-09 23:43 |
5 |
6,185 |
by qlj Mon, 2014-04-21 06:47 |
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loop modelling/Rosetta 3.4, 3.5 by berk » Tue, 2013-07-02 08:38 |
5 |
5,471 |
by MRH Mon, 2014-04-21 06:48 |
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how to use AbinitioRelax.mpi.linuxgccrelease? by albumns » Mon, 2012-03-26 22:50 |
5 |
6,269 |
by smlewis Mon, 2014-04-21 06:47 |
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