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Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic Minimizing across jumps
by SenyorDrew » Thu, 2017-07-06 06:26
2
2,096 by SenyorDrew
Thu, 2017-07-06 07:48
Normal topic multi state protein design
by rohi » Fri, 2020-09-04 08:14
2
1,381 by rmoretti
Tue, 2021-02-09 13:45
Normal topic total_score changes when decomposing bb hbonds ref2015
by Liviu Copoiu » Mon, 2022-10-31 15:40
2
201 by Liviu Copoiu
Mon, 2022-10-31 16:03
Normal topic relax with restraints
by jtmacd » Mon, 2010-11-08 09:11
2
2,472 by jtmacd
Mon, 2014-04-21 06:47
Normal topic filter score by I_sc and keep top 1000
by aaj » Tue, 2016-01-19 07:13
2
2,462 by aaj
Mon, 2016-02-22 07:43
Normal topic Different weights in the constraints for each stage of AbinitioRelax
by allan.ferrari » Sun, 2017-01-15 04:35
2
2,253 by smlewis
Sun, 2017-01-15 18:10
Normal topic Is CST_Design required for enzdes protocol?
by dasdevashishdas » Mon, 2018-09-03 00:51
2
1,853 by dasdevashishdas
Thu, 2018-09-27 03:35
Normal topic What is the best way to make a residue-specific SASA constraint?
by jmaly » Thu, 2020-01-23 16:40
2
1,663 by matteoferla
Wed, 2020-01-29 12:18
Normal topic problem plotting results from docking_analyser with provided Rscript
by madammolecular » Mon, 2021-02-01 14:44
2
1,057 by amystevens
Thu, 2021-09-30 14:18
Normal topic Weekly releases for commercial users?
by rjacak » Tue, 2022-03-22 07:48
2
565 by rjacak
Thu, 2022-03-31 10:53
Normal topic FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369
by knutjbj » Thu, 2011-02-03 03:24
2
4,116 by knutjbj
Mon, 2014-04-21 06:47
Normal topic loop file
by banshee » Tue, 2013-06-04 13:26
2
2,357 by banshee
Mon, 2014-04-21 06:48
Normal topic Score Differences between Ab Initio Scoring and Rescore
by mmarlett » Wed, 2016-06-15 09:14
2
2,228 by mmarlett
Thu, 2016-06-16 07:06
Normal topic Design with non-canonical amino acids (NCAA)
by yinasun » Mon, 2019-08-05 00:34
2
1,846 by matteoferla
Thu, 2019-08-22 05:39
Normal topic jd2 time out error
by ytao » Mon, 2013-03-04 20:47
2
2,324 by ytao
Mon, 2014-04-21 06:47
Normal topic I can't find the workflow about modeling disordered regsion using rosetta?
by lihowe » Thu, 2011-12-29 03:45
2
2,737 by wangyr
Mon, 2014-04-21 06:47
Normal topic Does the energy score output by fixbb design have unit?
by Lindsay » Mon, 2012-06-18 15:03
2
2,704 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Configuration of Robetta fragment libraries
by Run » Fri, 2014-01-24 23:03
2
2,580 by Run
Mon, 2014-04-21 06:48
Normal topic loop design
by varma » Sun, 2012-11-04 21:25
2
3,412 by varma
Mon, 2014-04-21 06:47
Normal topic Jump::random_trans strange behavior
by SergeyP » Tue, 2015-11-03 07:56
2
2,193 by SergeyP
Sat, 2015-12-19 05:20
Normal topic How to transform a pose from symmetric into non-symmetric?
by msardejani » Tue, 2016-10-04 16:55
2
2,155 by msardejani
Wed, 2016-10-05 10:53
Normal topic error when running beta_strand_homodimer_design
by szypanther » Sun, 2014-05-25 20:22
2
3,120 by szypanther
Mon, 2014-05-26 22:03
Normal topic Ineffective Constraints
by Sandy » Tue, 2017-09-05 19:36
2
1,911 by CameronJA
Wed, 2022-01-19 20:50
Normal topic Cluster Error
by justin » Mon, 2010-04-26 00:06
2
2,546 by justin
Mon, 2014-04-21 06:47
Normal topic Generate structural fragments
by kingljy » Tue, 2011-05-10 20:18
2
4,723 by pepfolder
Mon, 2014-04-21 06:47
Normal topic How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers?
by johnnytam100 » Wed, 2019-05-08 02:30
2
1,501 by johnnytam100
Wed, 2019-05-15 18:45
Normal topic Can't find the source code of FlexPepDock protocol in Rosetta3.1
by SunH » Thu, 2010-09-16 06:28
2
2,450 by barak
Mon, 2014-04-21 06:47
Normal topic The -symmetry:perturb_rigid_body_dofs flag
by doranhen » Sat, 2012-04-28 13:01
2
2,385 by doranhen
Mon, 2014-04-21 06:47
Normal topic Write PDB with multiple side-chain configurations
by pachecoj » Tue, 2014-09-30 21:42
2
2,554 by pachecoj
Thu, 2014-10-09 18:15
Normal topic Expanding the silent file
by jharamesh » Fri, 2018-01-12 09:15
2
1,622 by rmoretti
Mon, 2018-01-15 14:35
Normal topic Undocumented changes in BackrubDD
by abhi_pe_acharya » Mon, 2018-07-16 00:24
2
1,582 by abhi_pe_acharya
Sun, 2018-08-05 22:03
Normal topic protein surface design
by tatsiana.bylund » Sun, 2019-09-15 03:44
2
1,467 by dfcoelho
Tue, 2019-11-19 10:16
Normal topic how to relax structure constraining CA in Rosetta3.2?
by albumns » Tue, 2011-02-15 06:15
2
2,250 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb design use
by Lindsay » Fri, 2012-03-23 09:05
2
2,460 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Homology modeling
by mchldln » Mon, 2009-08-17 13:04
2
3,270 by smlewis
Mon, 2014-04-21 06:47
Normal topic what is the relationship and difference between Rosetta 3.0 and miniRosetta
by jarod » Thu, 2010-05-06 20:57
2
2,494 by jarod
Mon, 2014-04-21 06:47
Normal topic Loop Modelling: ERROR: switch_to_residue_type_set fails
by smiruthi » Wed, 2012-07-18 14:48
2
3,170 by smlewis
Mon, 2014-04-21 06:47
Normal topic Building Rosetta 3.1 for cs-Rosetta
by zdn3023 » Fri, 2010-02-26 14:31
2
2,572 by zdn3023
Mon, 2014-04-21 06:47
Normal topic symmetric docking application rosetta3.2: the docking_local_refine flag
by doranhen » Sun, 2012-05-06 02:20
2
2,808 by doranhen
Mon, 2014-04-21 06:47
Normal topic sign of ddG of mutation
by Lindsay » Wed, 2013-11-27 00:25
2
3,988 by Lindsay
Mon, 2014-04-21 06:48
Normal topic Calculating binding affinity
by phanvy » Wed, 2014-10-15 23:35
2
4,027 by phanvy
Thu, 2014-10-16 18:54
Normal topic Repeating sequence in Rosetta de novo protein folding
by orionshih » Wed, 2018-02-07 20:52
2
1,691 by sheehajh
Thu, 2018-02-08 21:18
Normal topic perturb_temp flag
by Loki01 » Tue, 2018-11-27 05:06
2
1,543 by rmoretti
Wed, 2019-04-03 09:58
Normal topic Ligand being read as part of protein structure
by MarkusAurelius » Thu, 2021-04-01 11:00
2
1,078 by MarkusAurelius
Fri, 2021-04-02 11:44
Normal topic genkic mover produced an unwanted HN - CA bond
by cttm4a1 » Mon, 2022-06-20 14:25
2
378 by cttm4a1
Mon, 2022-06-20 16:58
Normal topic the meaning of "maxsub" in score.fsc
by exchhattu » Tue, 2009-11-10 04:37
2
3,108 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddG backbone movement
by dave » Wed, 2012-10-03 03:23
2
2,659 by dave
Mon, 2014-04-21 06:47
Normal topic Do Rosetta support hydroxide(OH-) and oxide(O2-) params?
by dasdevashishdas » Thu, 2018-08-16 21:15
2
1,750 by dasdevashishdas
Thu, 2018-08-23 18:02
Normal topic Rosetta forcefield terms and interpretation
by zigeuner » Sat, 2013-05-25 16:59
2
4,346 by rmoretti
Mon, 2014-04-21 06:47
Normal topic dG/dsasa , What is the exact meaning?
by Apiwat » Sun, 2014-04-13 00:38
2
3,641 by Apiwat
Thu, 2014-04-17 09:56
Normal topic Rosetta CM round_thread.pdb doesn't exist and can't find pose (id = round)
by ahmadkhalifa » Wed, 2018-05-23 09:51
2
2,698 by rmoretti
Thu, 2018-06-28 14:09
Normal topic 4mer 6mer fragment database
by bjharris » Wed, 2020-09-09 15:12
2
1,354 by bjharris
Wed, 2020-09-09 20:04
Normal topic how does rosetta handle hydrogens?
by patcD » Tue, 2021-08-31 00:48
2
898 by patcD
Wed, 2021-09-01 06:54
Normal topic pose.energies().total_enegies().show_nonzero() changes after packer is applied
by Liviu Copoiu » Mon, 2022-11-07 16:51
2
233 by Liviu Copoiu
Tue, 2022-11-08 10:43
Normal topic Run PackRotamersMover on specified rotamer set
by pachecoj » Mon, 2014-11-10 06:51
2
2,423 by pachecoj
Tue, 2014-11-11 19:30
Normal topic Method for WebServer Fragment Generation
by Jacob_Verburgt » Tue, 2020-06-02 07:29
2
1,503 by Jacob_Verburgt
Tue, 2020-06-02 10:26
Normal topic Output and Input Tutorial
by jgustat » Fri, 2022-07-01 13:07
2
416 by jgustat
Fri, 2022-07-01 13:26
Normal topic Clustering Rosetta output PDB files
by ritacc18 » Sat, 2014-01-11 20:13
2
5,134 by jwillis
Sat, 2015-06-27 21:11
Normal topic What is "residue packing", "repacking", and so on?
by cossio » Wed, 2014-12-03 08:49
2
3,040 by cossio
Wed, 2014-12-03 14:51
Normal topic scoring with omega energy term
by SergeyP » Thu, 2017-03-09 12:03
2
2,219 by SergeyP
Fri, 2017-03-10 11:16
Normal topic Running time of Rosetta/FlexPepDock
by gerdos » Thu, 2015-10-15 02:14
2
2,269 by gerdos
Fri, 2015-10-16 03:01
Normal topic Job Distribution Error
by ac.research » Mon, 2020-02-10 08:22
2
1,470 by ac.research
Fri, 2020-02-14 23:33
Normal topic I got the message "ERROR: Residue names must be unique!".
by monos_morpheus » Sun, 2011-02-06 03:55
2
3,293 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Loop modelling,
by berk » Sat, 2013-06-08 08:29
2
2,431 by berk
Mon, 2014-04-21 06:48
Normal topic How to generate symmdef file for translational symmetry only?
by pitmand » Thu, 2015-05-14 11:34
2
2,622 by pitmand
Tue, 2015-05-26 12:20
Normal topic Problem creating pNNMAKE.gnu
by anirbanzz » Sat, 2010-04-17 02:14
3
3,640 by monica0569
Mon, 2014-04-21 06:47
Normal topic why docking results are different?
by albumns » Sat, 2010-12-18 23:53
3
3,007 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to make a combined PDB file?
by fenghc » Mon, 2013-04-01 06:27
3
14,112 by smlewis
Mon, 2014-04-21 06:47
Normal topic Segmentation fault
by Hongtham » Mon, 2014-12-15 20:21
3
4,469 by Sandy
Fri, 2015-08-07 15:49
Normal topic Silent Files
by ctaylor » Tue, 2009-12-22 09:22
3
2,921 by smlewis
Mon, 2014-04-21 06:47
Normal topic score terms
by qlj » Wed, 2013-07-03 08:00
3
3,747 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Modeling protonated histidine
by SenyorDrew » Mon, 2016-07-18 07:34
3
3,486 by matteoferla
Sat, 2017-08-05 07:18
Normal topic force field, energy function
by masterofpuppets » Wed, 2015-01-21 11:06
3
5,147 by masterofpuppets
Tue, 2015-01-27 07:07
Normal topic Multiprocessor Execution
by starone » Tue, 2016-04-19 20:06
3
3,604 by smlewis
Thu, 2016-04-21 16:00
Normal topic NOE constraints with Rosetta 3.1
by mpiuzzi » Wed, 2010-02-24 02:40
3
3,075 by mpiuzzi
Mon, 2014-04-21 06:47
Normal topic is it possbile to cluster pdb files?
by albumns » Wed, 2010-10-06 02:38
3
4,683 by smlewis
Mon, 2014-04-21 06:47
Normal topic Getting an interface score from RosettaDock without docking
by rosend » Fri, 2015-12-18 14:02
3
5,537 by rosend
Fri, 2015-12-18 19:39
Normal topic General protein-protein docking when no info. on structure is availble
by jasnyderjr » Fri, 2016-12-09 04:55
3
2,650 by smlewis
Tue, 2016-12-20 10:40
Normal topic Abinitio Video
by ac.research » Tue, 2017-09-12 04:00
3
2,816 by ac.research
Sun, 2017-09-24 11:25
Normal topic pyrosetta.rosetta.core.pose.rna
by chenjief » Tue, 2021-11-23 07:03
3
1,078 by matteoferla
Mon, 2022-01-10 06:44
Normal topic De novo density assembly weights don't add up to a 100
by ahmadkhalifa » Fri, 2018-08-03 12:07
3
1,924 by rmoretti
Tue, 2019-10-22 07:05
Normal topic Run protein-protein docking parallelly by mpi
by Zehui Zhou » Thu, 2023-02-02 06:23
3
62 by Zehui Zhou
Fri, 2023-02-03 05:51
Normal topic NC atom type [Solved]
by franfdez » Tue, 2012-02-07 16:05
3
3,455 by franfdez
Mon, 2014-04-21 06:47
Normal topic how to identify selected interface residues
by vijayaraj81 » Mon, 2014-03-31 01:40
3
3,675 by rmoretti
Tue, 2014-04-01 08:12
Normal topic ligand docking with rosetta_scripts.linuxgccrelease
by xpzhang » Thu, 2015-02-26 10:57
3
3,645 by rmoretti
Mon, 2015-03-30 16:58
Normal topic Cyclizing .pdb of a linear chain.
by jcminerlanl » Wed, 2017-07-05 23:56
3
2,528 by jcminerlanl
Thu, 2017-07-06 09:22
Normal topic Rescoring protein docking decoys to get Irms
by lj269 » Thu, 2014-10-23 13:23
3
3,585 by rmoretti
Wed, 2014-10-29 14:30
Normal topic loop modeling
by MRH » Thu, 2013-08-22 23:19
3
3,599 by MRH
Mon, 2014-04-21 06:48
Normal topic Conversion from Dihedral angle representation to Cartesian representation
by rodrigo.faccioli » Sat, 2012-02-25 11:57
3
15,596 by charlie.strauss
Fri, 2016-09-02 10:08
Normal topic Adding new files using rosetta classes went wrong
by Jeremy1990 » Sun, 2015-04-26 01:07
3
3,278 by rmoretti
Thu, 2015-04-30 16:09
Normal topic Calling a Rosetta xml script in a Python script gives fail to validate error
by ahmadkhalifa » Tue, 2018-03-06 08:00
3
3,499 by rmoretti
Mon, 2018-03-19 12:35
Normal topic XML schema file taken from Rosie docking giving errors in Rosetta Scripts
by Delfosse57 » Mon, 2022-07-18 10:51
3
452 by rmoretti
Mon, 2022-07-18 11:56
Normal topic build local user guide
by coomteng@gmail.com » Wed, 2018-03-28 13:55
3
2,172 by coomteng@gmail.com
Wed, 2018-03-28 14:58
Normal topic Determine the weights of score functions
by SunH » Thu, 2010-09-02 07:20
3
3,959 by smlewis
Mon, 2014-04-21 06:47
Normal topic what's the difference between recovery and sequence identity
by Lindsay » Thu, 2012-04-26 05:46
3
3,932 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to get the GDT_TS?
by JadAbbass » Thu, 2013-09-05 11:59
3
4,848 by rmoretti
Mon, 2014-04-21 06:48
Normal topic does rosetta good at peptide-protein docking?
by albumns » Mon, 2010-12-27 18:51
3
4,758 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with running turtorial of rna denovo
by myle » Fri, 2017-04-14 09:23
3
2,485 by rmoretti
Tue, 2017-04-18 13:49
Normal topic should rosetta3.1 do prepacking before docking?
by lqzhang » Thu, 2010-01-07 12:15
3
2,893 by smlewis
Mon, 2014-04-21 06:47
Normal topic Converting charmm parameter files (.par)
by ajasja » Mon, 2014-09-29 07:19
3
3,521 by jcminerlanl
Tue, 2017-12-19 14:03
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