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Rosetta 3 - General
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make_fragments by ctaylor » Mon, 2009-09-21 12:41 |
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2,989 |
by ctaylor Mon, 2014-04-21 06:47 |
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Using mode=profile by Biokhar » Fri, 2012-07-06 00:29 |
2 |
3,829 |
by scombs Mon, 2014-04-21 06:47 |
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How to prevent rotamers from being pruned from the interaction graph? by msun » Wed, 2013-04-17 14:19 |
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2,898 |
by smlewis Mon, 2014-04-21 06:47 |
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Adding centroid .params files for non-canonical residues based on all-atom .params files by jcminerlanl » Thu, 2017-04-27 09:28 |
2 |
2,663 |
by vmulligan Thu, 2017-04-27 16:41 |
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The concept of unsatisfied hydrogen bond by asbelx » Wed, 2018-04-25 01:32 |
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3,277 |
by asbelx Thu, 2018-04-26 00:23 |
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Controlling Input in the Tutorial by Smbat » Wed, 2020-07-29 22:41 |
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1,720 |
by Smbat Thu, 2020-07-30 03:07 |
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Differences between energy values reported in the tutorials and the ones obtained by running the code, what is normal? by ericlang » Mon, 2021-07-05 05:43 |
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1,310 |
by ericlang Mon, 2021-07-05 06:59 |
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Specifying sidechain NOE restraints in Relax! by kalabharath » Mon, 2012-12-10 16:44 |
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3,102 |
by kalabharath Mon, 2014-04-21 06:47 |
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Using NCAAs in protocols with native heme proteins by htorres » Wed, 2018-01-24 08:32 |
2 |
2,782 |
by htorres Mon, 2018-02-05 06:53 |
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de novo protein prediction by pci112 » Tue, 2021-03-23 10:13 |
2 |
1,584 |
by pci112 Thu, 2021-03-25 01:44 |
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Residue variant types and fragments by jadolfbr » Mon, 2013-01-21 09:01 |
2 |
3,285 |
by jadolfbr Mon, 2014-04-21 06:47 |
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No RMS and IRMS values in protein/nucleic acid docking by rbeier1 » Wed, 2016-01-13 12:41 |
2 |
3,370 |
by smlewis Thu, 2016-01-14 08:19 |
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Error in flex ddG tutorial by wentlewi » Sat, 2020-05-16 08:06 |
2 |
1,857 |
by Alvin Yang Wed, 2023-10-04 03:34 |
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De novo backbone trace from fragments by Victor Tobiasson » Tue, 2020-12-22 06:34 |
2 |
2,000 |
by Victor Tobiasson Tue, 2020-12-22 09:18 |
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relax from a silent input file by mintseris » Thu, 2010-04-29 19:54 |
2 |
3,043 |
by mintseris Mon, 2014-04-21 06:47 |
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Is the Fold&Dock protocol availabe in Rosetta3.1 by justin » Mon, 2011-01-17 02:41 |
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2,548 |
by smlewis Mon, 2014-04-21 06:47 |
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-RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application? by Karol » Thu, 2016-05-12 06:30 |
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2,673 |
by Karol Thu, 2016-05-12 07:58 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:18 |
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2,205 |
by jalan Sun, 2020-04-12 08:01 |
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Docking antibody to membrane protein by Yegor_Ko » Thu, 2023-10-12 07:37 |
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566 |
by Yegor_Ko Fri, 2023-10-20 01:35 |
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Error when clustering the output from a docking study by jos » Thu, 2011-09-08 03:26 |
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3,447 |
by jos Mon, 2014-04-21 06:47 |
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Rosetta Resfile header by G Mustafa » Mon, 2020-01-20 06:45 |
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2,295 |
by G Mustafa Tue, 2020-01-21 06:04 |
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score against rmsd plot of designs by LanMei » Mon, 2022-03-21 22:46 |
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1,166 |
by LanMei Tue, 2022-03-22 20:45 |
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Problems in Loop Modeling by jklett » Mon, 2009-10-19 07:26 |
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3,322 |
by jklett Mon, 2014-04-21 06:47 |
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ERROR: PDB reader is ignoring atom by phanvy » Wed, 2014-04-16 17:59 |
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3,743 |
by phanvy Mon, 2014-04-21 03:58 |
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which make_fragments.pl by renedominik » Mon, 2018-06-04 08:58 |
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3,390 |
by renedominik Sat, 2018-07-07 03:03 |
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RosettaRemodel gives no increased output when setting higher -num_trajectory by JW_24 » Tue, 2020-09-22 11:49 |
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1,670 |
by JW_24 Wed, 2020-09-23 01:27 |
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Help deciphering an input by Elijah_Hix » Wed, 2021-09-22 11:12 |
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1,363 |
by Elijah_Hix Thu, 2021-09-23 10:13 |
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AbinitioRelax with restraints/constraints by jtmacd » Mon, 2011-07-11 07:07 |
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4,282 |
by jtmacd Mon, 2014-04-21 06:47 |
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Calibur not listing cluster members by Swillard » Sun, 2018-07-01 13:07 |
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2,427 |
by benhardy Fri, 2021-05-07 07:22 |
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Talaris scoring function by Lindsay » Sun, 2014-08-24 18:16 |
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6,405 |
by AndrewLeaver-Fay Sun, 2015-09-20 19:34 |
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what is the xxx.static.linuxgccrelease? by syoifczeri » Sat, 2015-10-31 04:09 |
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6,142 |
by syoifczeri Mon, 2015-11-02 03:59 |
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ERROR: Not complementary at positions by szcshr123 » Fri, 2021-02-26 05:58 |
2 |
1,924 |
by szcshr123 Fri, 2021-02-26 14:41 |
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ligand docking by hong wei » Thu, 2021-11-18 05:01 |
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1,359 |
by hong wei Thu, 2021-11-25 02:46 |
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Different dG_separated from RAbD and InterfaceAnalyzer by brubin » Mon, 2022-12-19 13:58 |
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954 |
by brubin Tue, 2022-12-20 13:26 |
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Using Relax to asses conformational space by glapidoth11 » Sat, 2011-07-30 05:09 |
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2,962 |
by smlewis Mon, 2014-04-21 06:47 |
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Intermediate file insertion by exchhattu » Wed, 2009-09-02 18:44 |
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2,753 |
by exchhattu Mon, 2014-04-21 06:47 |
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RosettaCM: threading okay, but hybridize loses many secondary structure by lanselibai » Wed, 2021-06-23 13:51 |
2 |
1,317 |
by lanselibai Thu, 2021-06-24 10:16 |
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Constraining a docking study by jos » Tue, 2011-10-18 05:26 |
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2,692 |
by rmoretti Mon, 2014-04-21 06:47 |
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"Local sequence-structure compatability" in "design of ideal protein structures" by petrikigor » Sun, 2012-12-02 09:25 |
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3,181 |
by petrikigor Mon, 2014-04-21 06:47 |
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changing the chain id by aneamtu » Tue, 2018-01-09 00:08 |
2 |
4,871 |
by aneamtu Thu, 2018-01-18 00:56 |
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MPI optimization on TACC stampede2 HPC by rlwoltz » Tue, 2021-03-16 18:07 |
2 |
2,071 |
by rlwoltz Wed, 2021-03-24 22:36 |
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reporting IteratedConvergence status by sdh_h » Thu, 2016-08-04 10:05 |
2 |
2,564 |
by sdh_h Thu, 2016-08-04 11:22 |
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what is minirosetta by Lindsay » Tue, 2012-04-10 07:48 |
2 |
9,876 |
by Lindsay Mon, 2014-04-21 06:47 |
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Issue with Loop Analyzer Mover ouput by abhi_pe_acharya » Mon, 2018-04-30 09:55 |
2 |
2,091 |
by abhi_pe_acharya Mon, 2018-04-30 22:54 |
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error running rosetta3.1 demos by lvtun » Thu, 2010-10-21 20:43 |
2 |
3,149 |
by lvtun Mon, 2014-04-21 06:47 |
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Rosetta atoms types for enzyme design by bharat_46010 » Thu, 2011-11-10 06:01 |
2 |
3,986 |
by rmoretti Mon, 2014-04-21 06:47 |
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Questions on energy oddities by pachecoj » Wed, 2014-10-15 13:26 |
2 |
2,762 |
by pachecoj Wed, 2014-10-15 15:12 |
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Error score_scatter_plot.py by jrcf » Wed, 2015-12-30 05:46 |
2 |
3,467 |
by jrcf Fri, 2016-02-12 16:41 |
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Modelling a loopless structure by jhbrown » Tue, 2011-11-22 11:39 |
2 |
3,013 |
by jhbrown Mon, 2014-04-21 06:47 |
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docking mover(s) in rosetta by aaj » Mon, 2016-01-25 02:38 |
2 |
2,751 |
by aaj Mon, 2016-02-22 07:50 |
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PUBLICATION using Rosetta as a method by phanvy » Thu, 2014-06-19 08:33 |
2 |
3,041 |
by phanvy Sun, 2014-06-22 23:29 |
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Another request for help with restarts by jasnyderjr » Tue, 2015-08-18 12:14 |
2 |
2,989 |
by rmoretti Tue, 2015-08-18 17:11 |
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Error Atom_::dihedral_between_bonded_children by abiadak » Mon, 2012-07-30 06:34 |
2 |
3,974 |
by abiadak Mon, 2014-04-21 06:47 |
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B3-protein design using rosettaScript movers by straore » Mon, 2015-03-16 05:05 |
2 |
2,883 |
by straore Fri, 2015-04-17 01:54 |
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Flag to not use PDB ligands by matteoferla » Wed, 2019-08-21 10:14 |
2 |
1,960 |
by matteoferla Wed, 2019-08-21 11:58 |
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Ca-RMSD by jrcf » Mon, 2016-02-29 16:39 |
2 |
3,300 |
by jrcf Tue, 2016-05-03 17:40 |
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JD3 w/ Silent file output crashing - Option filename not found by aduffy33 » Mon, 2023-10-30 13:40 |
2 |
431 |
by aduffy33 Mon, 2023-10-30 15:35 |
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Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:19 |
2 |
3,978 |
by rmoretti Mon, 2014-04-21 06:47 |
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input secondary structure prediction to AbinitioRelax by biofisikx » Mon, 2010-08-09 12:36 |
2 |
2,684 |
by biofisikx Mon, 2014-04-21 06:47 |
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The following options have been set but have not yet been used by jrcf » Fri, 2015-10-09 10:48 |
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3,875 |
by jrcf Fri, 2015-10-16 10:57 |
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RifDock building error on Ubuntu 20.04，please help！ by guowuchen » Mon, 2022-03-28 03:53 |
2 |
1,822 |
by guowuchen Wed, 2022-03-30 04:20 |
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How do I add virtual atom to my cofactor (metal ion) in rosettadock? by monos_morpheus » Sat, 2011-02-05 21:24 |
2 |
3,399 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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keep crystal structure hydrogens by gw » Wed, 2011-07-20 03:54 |
2 |
3,294 |
by gw Mon, 2014-04-21 06:47 |
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How to remove clashes in peptide bonds and proline residue? by Anatol » Fri, 2012-08-31 09:26 |
2 |
3,124 |
by Anatol Mon, 2014-04-21 06:47 |
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Homology modeling by mchldln » Mon, 2009-08-17 13:04 |
2 |
3,734 |
by smlewis Mon, 2014-04-21 06:47 |
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generate full atom coordinates with abinitio rosetta structure prediction by anusmita_sahoo » Tue, 2010-03-30 00:11 |
2 |
3,213 |
by Trentage Mon, 2014-04-21 06:47 |
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Interface energy vs binding energy by Apiwat » Wed, 2014-02-05 00:47 |
2 |
6,259 |
by Apiwat Sat, 2014-02-08 01:41 |
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-fake_native Error - not found in command line of rosetta 3.2.1 by vsjasion » Wed, 2011-10-05 12:01 |
2 |
3,367 |
by vsjasion Mon, 2014-04-21 06:47 |
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mutate residue at termini by jarek » Fri, 2013-09-13 09:24 |
2 |
3,790 |
by jarek Mon, 2014-04-21 06:48 |
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Cannot create cst files from upl files by road runner » Wed, 2015-11-11 22:07 |
2 |
2,813 |
by road runner Tue, 2015-12-01 10:08 |
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the meaning of "maxsub" in score.fsc by exchhattu » Tue, 2009-11-10 04:37 |
2 |
3,602 |
by smlewis Mon, 2014-04-21 06:47 |
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harmonic_Calphas in RosettaLigand flags.txt by cpkuntz » Wed, 2010-07-14 08:57 |
2 |
2,609 |
by smlewis Mon, 2014-04-21 06:47 |
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constrain files tutorial by knutjbj » Fri, 2011-02-18 23:57 |
2 |
2,776 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: filtered_alignments.size() > 0 by jhbrown » Tue, 2012-01-17 13:28 |
2 |
2,550 |
by jhbrown Mon, 2014-04-21 06:47 |
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Error running design in 3.4 by inder » Thu, 2012-07-05 19:27 |
2 |
3,559 |
by inder Mon, 2014-04-21 06:47 |
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smoothly kill a mpirun process by fred » Tue, 2014-02-18 06:06 |
2 |
5,355 |
by Ashafix Wed, 2014-02-19 06:53 |
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Good baseline settings for side chain packing by pachecoj » Tue, 2015-01-13 19:25 |
2 |
4,299 |
by rmoretti Wed, 2015-01-21 10:05 |
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rosetta compile by MA » Wed, 2017-04-26 00:46 |
2 |
2,310 |
by MA Thu, 2017-04-27 18:53 |
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Explanation of constraint functions? by aloshbau » Mon, 2015-12-14 22:38 |
2 |
2,529 |
by aloshbau Mon, 2015-12-14 23:30 |
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error in mol2 to params conversion for GAliganddocking by jalan » Wed, 2020-04-22 06:08 |
2 |
1,917 |
by jalan Thu, 2020-04-23 05:19 |
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Chain name being read as residue by MarkusAurelius » Mon, 2021-03-22 11:19 |
2 |
1,436 |
by MarkusAurelius Mon, 2021-03-29 09:06 |
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score.sc only shows total_score and with all zeros by johnnytam100 » Mon, 2022-06-06 20:04 |
2 |
981 |
by johnnytam100 Tue, 2022-06-07 19:18 |
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Calculating SAP score using RosettaScripts by varunmc99 » Fri, 2023-05-12 11:03 |
2 |
873 |
by varunmc99 Fri, 2023-05-12 11:49 |
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Predict the N-terminal of a protein by aliaselin » Mon, 2010-11-08 03:23 |
2 |
2,633 |
by smlewis Mon, 2014-04-21 06:47 |
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No structure mods allowed during scoring! error by jadolfbr » Wed, 2013-12-04 14:06 |
2 |
3,263 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Peptide building by berk » Thu, 2015-07-30 06:53 |
2 |
3,016 |
by rmoretti Thu, 2015-08-06 09:21 |
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homo-oligomeric proteins.............folddock+symmetry+abinito by anusmita_sahoo » Thu, 2010-04-29 02:59 |
2 |
3,695 |
by biofisikx Mon, 2014-04-21 06:47 |
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How to allow rosetta to recognize the ASP and protonated ASP? by Jeffrey_Chen » Mon, 2014-03-24 20:34 |
2 |
4,121 |
by Jeffrey_Chen Tue, 2014-03-25 23:06 |
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Free FSC score for validating refinement by ahmadkhalifa » Thu, 2018-05-10 05:53 |
2 |
2,478 |
by ahmadkhalifa Fri, 2018-06-29 07:54 |
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Modelling Sheets by monteirotorres » Thu, 2009-07-02 11:41 |
2 |
2,909 |
by monteirotorres Mon, 2014-04-21 06:47 |
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runtime error by exchhattu » Wed, 2010-03-03 02:54 |
2 |
2,590 |
by exchhattu Mon, 2014-04-21 06:47 |
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Creation of core.* file in current running directory by alejandro » Tue, 2011-12-06 06:19 |
2 |
3,150 |
by alejandro Mon, 2014-04-21 06:47 |
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Multigraft by bo » Tue, 2013-12-24 18:06 |
2 |
3,239 |
by Sergey Menis Mon, 2014-04-21 06:48 |
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Meaning of a couple terms? by aloshbau » Sun, 2016-02-07 16:48 |
2 |
2,579 |
by aloshbau Sun, 2016-02-14 20:14 |
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Rosetta Double changing mmCIF chain ID by Victor Tobiasson » Thu, 2021-05-13 07:57 |
2 |
1,543 |
by Victor Tobiasson Thu, 2021-05-13 08:33 |
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Connecting 2 Domains Via Non-Flexible Linker by jurkm » Mon, 2011-09-05 06:10 |
2 |
5,832 |
by kbuhr Tue, 2015-07-14 04:30 |
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Symmetric Processing for evaluating side-chain of chi angle by qlj » Wed, 2012-10-10 04:08 |
2 |
3,012 |
by smlewis Mon, 2014-04-21 06:47 |
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minimum number of nstruct to build at 65% homolgy by MRH » Thu, 2013-08-22 07:29 |
2 |
3,070 |
by MRH Mon, 2014-04-21 06:48 |
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Working through tutorials: expected output scorces differ from calculated results by j.schmue » Sat, 2020-01-18 13:16 |
2 |
1,852 |
by j.schmue Tue, 2020-01-28 13:31 |
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generating 10 lowest energy structures from abinitio by isengupta13 » Fri, 2010-05-07 11:44 |
2 |
2,618 |
by ndousis Mon, 2014-04-21 06:47 |
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