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Rosetta 3 - General
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Cluster application, How does it sort decoys by energy? by Apiwat » Wed, 2014-04-16 01:52 |
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2,273 |
by Apiwat Thu, 2014-04-17 09:56 |
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possible idealize app bug - residues being deleted by jtmacd » Mon, 2009-06-08 06:27 |
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2,121 |
by jtmacd Mon, 2014-04-21 06:47 |
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"caught exception" for PDB with membrane "DUM" residues by nitroamos » Wed, 2018-05-30 08:35 |
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2,684 |
by Awagner7 Tue, 2020-04-28 10:51 |
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Can't find the source code of FlexPepDock protocol in Rosetta3.1 by SunH » Thu, 2010-09-16 06:28 |
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2,249 |
by barak Mon, 2014-04-21 06:47 |
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Creation of core.* file in current running directory by alejandro » Tue, 2011-12-06 06:19 |
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2,525 |
by alejandro Mon, 2014-04-21 06:47 |
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Multigraft by bo » Tue, 2013-12-24 18:06 |
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2,549 |
by Sergey Menis Mon, 2014-04-21 06:48 |
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Meaning of a couple terms? by aloshbau » Sun, 2016-02-07 16:48 |
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1,865 |
by aloshbau Sun, 2016-02-14 20:14 |
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Rosetta Double changing mmCIF chain ID by Victor Tobiasson » Thu, 2021-05-13 07:57 |
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736 |
by Victor Tobiasson Thu, 2021-05-13 08:33 |
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Connecting 2 Domains Via Non-Flexible Linker by jurkm » Mon, 2011-09-05 06:10 |
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4,826 |
by kbuhr Tue, 2015-07-14 04:30 |
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how to relax structure constraining CA in Rosetta3.2? by albumns » Tue, 2011-02-15 06:15 |
2 |
2,064 |
by smlewis Mon, 2014-04-21 06:47 |
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Symmetric Processing for evaluating side-chain of chi angle by qlj » Wed, 2012-10-10 04:08 |
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2,336 |
by smlewis Mon, 2014-04-21 06:47 |
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minimum number of nstruct to build at 65% homolgy by MRH » Thu, 2013-08-22 07:29 |
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2,303 |
by MRH Mon, 2014-04-21 06:48 |
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Working through tutorials: expected output scorces differ from calculated results by j.schmue » Sat, 2020-01-18 13:16 |
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1,098 |
by j.schmue Tue, 2020-01-28 13:31 |
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build parallel version of Rosetta by atfrank » Tue, 2009-10-06 22:33 |
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3,087 |
by smlewis Mon, 2014-04-21 06:47 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Thu, 2016-06-30 11:06 |
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3,158 |
by rmoretti Tue, 2016-07-12 08:18 |
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is there a preferred way to enforce an hydrogen bond ? by logandonaldson » Wed, 2013-03-20 13:14 |
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2,192 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fragment picker by phanvy » Mon, 2014-12-08 04:25 |
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2,468 |
by phanvy Wed, 2014-12-10 00:17 |
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InterfaceAnalyzer atom subset by Parker.deWaal » Sun, 2016-03-13 13:41 |
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2,077 |
by rmoretti Mon, 2016-03-14 07:58 |
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Data Check for a newb by ac.research » Sun, 2017-03-12 23:42 |
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1,738 |
by ac.research Fri, 2017-03-31 07:36 |
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Having trouble producing a .pdb file from a silent output file after running abinitio relax by burkheadlab » Wed, 2011-03-09 12:48 |
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2,372 |
by burkheadlab Mon, 2014-04-21 06:47 |
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Adding noncanonical amino acid (PCA) to Rosetta 3 by JuliusSu » Fri, 2014-08-01 11:23 |
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3,240 |
by JuliusSu Fri, 2014-08-08 02:07 |
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Rosetta Dock with MPI / PBS by edpryor » Wed, 2012-09-05 11:04 |
3 |
5,461 |
by smlewis Mon, 2014-04-21 06:47 |
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When does Rosetta switch from centroid to FA mode? by MarkW » Fri, 2015-07-03 04:48 |
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2,750 |
by rmoretti Sun, 2015-07-05 14:28 |
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why energy is positive? by albumns » Tue, 2014-12-23 00:05 |
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3,471 |
by rmoretti Mon, 2015-02-09 11:21 |
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what is 05.2009 ideal coordinates by Lindsay » Tue, 2014-09-23 20:36 |
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2,688 |
by rmoretti Mon, 2014-09-29 13:45 |
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Can I thread a two chained structure in RosettaCM? by ahmadkhalifa » Mon, 2018-01-08 09:41 |
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2,473 |
by aaxx Wed, 2019-11-06 01:44 |
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Rosetta-based projects using and licensing by SergeyP » Fri, 2018-10-26 15:45 |
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2,193 |
by SergeyP Mon, 2018-11-12 09:19 |
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Is it better to have smaller nstruct but many runs? by Loki01 » Mon, 2018-11-19 11:50 |
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1,699 |
by smlewis Mon, 2018-11-19 13:20 |
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how build (N-terminal 17 residues) structre /fragment file generation by venkatazb » Wed, 2016-07-27 23:56 |
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2,557 |
by smlewis Fri, 2016-07-29 07:43 |
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Design constraints on pairs of residues by SenyorDrew » Mon, 2017-10-02 07:25 |
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2,358 |
by SenyorDrew Mon, 2017-11-13 11:44 |
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Problem with HETATM entries in PDB file by asmi » Fri, 2011-05-20 10:17 |
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4,679 |
by smlewis Mon, 2014-04-21 06:47 |
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Problems with output control by Sunyp_IM » Thu, 2017-06-22 15:30 |
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2,786 |
by rmoretti Wed, 2017-06-28 01:33 |
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Hydrogen bond detection and shape complementarity by sujigeorge1979 » Fri, 2019-06-14 02:39 |
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1,630 |
by sujigeorge1979 Thu, 2019-06-27 01:30 |
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backrub score different from calculated score by attesor » Wed, 2014-04-09 07:34 |
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2,871 |
by rmoretti Thu, 2014-04-10 07:38 |
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Problem with outputing decoys in the process of AbinitioRelax by MA » Thu, 2017-07-13 23:27 |
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1,992 |
by rmoretti Thu, 2017-08-03 08:50 |
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Protein folding using Monte Carlo derived techniques and implicit solvation by hefeweizen » Tue, 2013-12-10 06:30 |
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3,261 |
by rmoretti Mon, 2014-04-21 06:48 |
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Molecular oxygen by matteoferla » Sat, 2018-02-24 06:05 |
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2,318 |
by matteoferla Mon, 2018-02-26 02:05 |
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Loop modeling FLAGS by jklett » Fri, 2009-12-04 02:45 |
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2,674 |
by jklett Mon, 2014-04-21 06:47 |
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How to make a resfile by dflaher » Fri, 2017-11-03 10:26 |
3 |
3,042 |
by smlewis Wed, 2017-11-08 12:08 |
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why docking results are different? by albumns » Sat, 2010-12-18 23:53 |
3 |
2,780 |
by smlewis Mon, 2014-04-21 06:47 |
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Maximum Number of Constraints by jurkm » Fri, 2011-06-17 05:23 |
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4,245 |
by jurkm Mon, 2014-04-21 06:47 |
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is it possbile to cluster pdb files? by albumns » Wed, 2010-10-06 02:38 |
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4,395 |
by smlewis Mon, 2014-04-21 06:47 |
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Biopython error in mac os x by vinodh » Tue, 2012-06-12 12:23 |
3 |
3,404 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Error with simple_cycpep_predict protocol while using a native pdb file by Florent Langenfeld » Tue, 2019-03-26 10:05 |
3 |
1,615 |
by Florent Langenfeld Tue, 2020-09-22 03:03 |
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Loop Modeling by ctaylor » Fri, 2009-12-18 11:42 |
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2,636 |
by ctaylor Mon, 2014-04-21 06:47 |
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first run of abinitio in rosetta 3.2 produces an error right away by burkheadlab » Fri, 2011-03-04 22:50 |
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2,931 |
by smlewis Mon, 2014-04-21 06:47 |
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Quesition about Relax Mode by crysta11 » Wed, 2009-10-21 09:57 |
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2,871 |
by smlewis Mon, 2014-04-21 06:47 |
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how to use backrub in rosetta3.1 by lqzhang » Mon, 2010-01-11 14:43 |
3 |
2,631 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta3.2 cluster application file-reading error by mdyini » Wed, 2011-03-09 16:59 |
3 |
4,754 |
by smlewis Mon, 2014-04-21 06:47 |
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Information about “membrane_highres_Menv_smooth.wts” by Groros » Sun, 2011-10-02 03:59 |
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3,106 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg calculation by Lindsay » Thu, 2013-09-12 10:19 |
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4,616 |
by Lindsay Mon, 2014-04-21 06:48 |
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Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type" by zhoubin » Sun, 2021-02-28 08:51 |
3 |
915 |
by zhoubin Mon, 2021-03-01 22:11 |
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Solving van der waals clashes in a transmembrane protein model with rosetta by doranhen » Wed, 2012-12-05 00:12 |
3 |
2,988 |
by smlewis Mon, 2014-04-21 06:47 |
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calculate low-resolution total docking score for a input pdb by jasnyderjr » Fri, 2015-12-11 23:08 |
3 |
2,982 |
by rmoretti Wed, 2015-12-16 11:22 |
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Determine the weights of score functions by SunH » Thu, 2010-09-02 07:20 |
3 |
3,698 |
by smlewis Mon, 2014-04-21 06:47 |
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How to set up options in rosetta by alejandro » Wed, 2011-04-06 02:08 |
3 |
4,155 |
by smlewis Mon, 2014-04-21 06:47 |
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Denovo density didn't output a structure by ahmadkhalifa » Mon, 2018-02-12 08:10 |
3 |
1,998 |
by ylwang Wed, 2018-11-14 03:03 |
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How to generate constraints of active sites from a pdb file of an enzyme by Albert » Sun, 2013-05-26 20:07 |
3 |
2,913 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Change the number of residues on pdb file! by phanvy » Tue, 2014-04-15 23:26 |
3 |
8,457 |
by rmoretti Mon, 2015-02-09 09:09 |
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pmut and scoring by ldlamini » Tue, 2021-09-14 00:46 |
3 |
749 |
by matteoferla Mon, 2021-09-20 06:05 |
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Bind a Ligand to RNA by hdavis9 » Wed, 2010-07-14 09:07 |
3 |
2,489 |
by smlewis Mon, 2014-04-21 06:47 |
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-loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease by tsjain » Tue, 2013-02-05 18:47 |
3 |
3,045 |
by tsjain Mon, 2014-04-21 06:47 |
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run Rosetta under windows prompt by skipper » Fri, 2013-12-20 21:16 |
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3,571 |
by rmoretti Mon, 2014-04-21 06:48 |
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Clarify ProteinInterfaceDesign “randomness” by tsztain » Wed, 2019-02-27 09:41 |
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1,544 |
by rmoretti Sat, 2019-03-30 12:12 |
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Rotate chain by Germanico » Sun, 2021-05-09 16:36 |
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939 |
by danpf Mon, 2021-05-10 10:04 |
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membrane modeling error! by wtscrystal » Wed, 2009-12-09 21:28 |
3 |
4,344 |
by arthuc01 Mon, 2014-04-21 06:47 |
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sequence_tolerance is very slow when -ms:num_packs > 1 by coomteng@gmail.com » Thu, 2016-08-25 13:17 |
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2,470 |
by coomteng@gmail.com Fri, 2016-08-26 00:01 |
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does rosetta good at peptide-protein docking? by albumns » Mon, 2010-12-27 18:51 |
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4,500 |
by smlewis Mon, 2014-04-21 06:47 |
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create a centroid file from structure or NOE list by logandonaldson » Wed, 2013-03-20 12:23 |
3 |
4,265 |
by smlewis Mon, 2014-04-21 06:47 |
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Fastrelax energy by Lindsay » Thu, 2014-01-16 21:04 |
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4,036 |
by rmoretti Mon, 2014-04-21 06:48 |
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Rosetta Design Stalling by Jhreed » Sun, 2016-03-06 14:38 |
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2,488 |
by rmoretti Mon, 2016-03-07 14:20 |
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Only 430 models are generated for membrane prediction by justin » Wed, 2010-01-06 00:04 |
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2,760 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta can't handle symmetric fold and dock for >10-subunit protein? by myang » Mon, 2011-09-26 11:52 |
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2,978 |
by IAndre Mon, 2014-04-21 06:47 |
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Rosetta documentation by Ashafix » Sat, 2013-08-31 06:50 |
3 |
4,185 |
by Ashafix Mon, 2014-04-21 06:48 |
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Rosetta remodel on intel Xeon Phi by pablogalazdavison » Wed, 2016-09-14 15:35 |
3 |
2,542 |
by pablogalazdavison Thu, 2016-09-15 16:36 |
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how to use rosettadesign to do mutations on protein structure by lqzhang » Thu, 2010-03-04 07:43 |
3 |
3,419 |
by vanita Mon, 2014-04-21 06:47 |
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AnchoredPDBcreator by spraha » Wed, 2012-03-14 23:34 |
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2,677 |
by smlewis Mon, 2014-04-21 06:47 |
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I got so many atoms in one residue by ylwang » Tue, 2020-03-24 04:40 |
3 |
1,265 |
by ylwang Tue, 2020-03-24 19:35 |
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Questions about rosetta fragment library ranking and fragment conformation sampling algorithm by mdyini » Thu, 2011-05-19 17:34 |
3 |
3,828 |
by dgront Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer total score = 0.000 by vmc99 » Wed, 2019-06-12 14:06 |
3 |
1,908 |
by jadolfbr Wed, 2019-06-12 20:17 |
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How to set start coordinates for ligand when doing protein_ligand docking by Huanhuan » Wed, 2021-08-18 21:09 |
3 |
725 |
by matteoferla Fri, 2021-08-20 08:37 |
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how to get reliable results for carbohydrate docking? by albumns » Sun, 2010-09-05 23:12 |
3 |
4,136 |
by smlewis Mon, 2014-04-21 06:47 |
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Hbond tripped by alejandro » Mon, 2011-11-21 04:17 |
3 |
3,073 |
by alejandro Mon, 2014-04-21 06:47 |
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Error Scoring Application- Illegal attempt to score by samuelrpita » Thu, 2015-08-06 14:45 |
3 |
3,676 |
by rmoretti Wed, 2015-08-12 15:03 |
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# decoys of silent by fred » Wed, 2014-04-02 06:00 |
3 |
2,626 |
by fred Fri, 2014-04-04 11:34 |
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ddG from backrub by jte » Tue, 2010-10-05 14:09 |
3 |
2,602 |
by smlewis Mon, 2014-04-21 06:47 |
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trying to create heme.params by einew » Mon, 2011-02-28 13:33 |
3 |
3,550 |
by einew Mon, 2014-04-21 06:47 |
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Question about run FLEXPEPDOCK with 3 chain by phanvy » Wed, 2014-07-02 08:46 |
3 |
2,729 |
by phanvy Wed, 2014-07-02 23:32 |
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score_jd2.macosclangrelease No such file or directory by ahmadkhalifa » Mon, 2017-11-27 09:26 |
3 |
2,638 |
by everyday847 Tue, 2017-11-28 13:07 |
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Failure to find libraries during build by NCallahan » Mon, 2010-07-26 15:41 |
3 |
4,352 |
by smlewis Mon, 2014-04-21 06:47 |
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Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles? by nh_prt » Tue, 2013-03-26 12:22 |
3 |
2,805 |
by smlewis Mon, 2014-04-21 06:47 |
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Abinitio isolated by ac.research » Wed, 2018-04-04 07:36 |
3 |
1,735 |
by smlewis Wed, 2018-04-04 10:42 |
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interpreting score values in silent output file after running abinitiorelax by burkheadlab » Wed, 2011-03-09 15:42 |
3 |
2,804 |
by smlewis Mon, 2014-04-21 06:47 |
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I am a beginner in rosetta software and need help to build params file by nais » Fri, 2011-03-18 13:37 |
3 |
5,888 |
by rmoretti Mon, 2014-04-21 06:47 |
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relax - P6G molecule by allan.ferrari » Wed, 2016-11-30 05:01 |
3 |
2,243 |
by allan.ferrari Tue, 2017-01-03 05:02 |
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small molecule charge generated by molfile_to_params.py by rohi » Wed, 2021-03-17 09:35 |
3 |
909 |
by rmoretti Wed, 2021-03-17 13:52 |
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Does Rosetta have an app for detecting brakes and clashes in proteins by Anatol » Sat, 2012-09-08 15:48 |
3 |
3,574 |
by smlewis Mon, 2014-04-21 06:47 |
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Refinement of a PDB structure containing multiple models by ahmadkhalifa » Wed, 2018-04-18 07:44 |
3 |
1,867 |
by smlewis Wed, 2018-04-18 19:03 |
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ERROR: unrecognized atomtype property VIRTUAL by harshkhare » Mon, 2011-11-14 09:40 |
3 |
3,062 |
by harshkhare Mon, 2014-04-21 06:47 |
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Propagating the same mutation over "different" chains by mdeklotz » Thu, 2018-07-26 09:27 |
3 |
1,783 |
by rmoretti Fri, 2018-08-03 08:42 |
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