You are here
Rosetta 3 - General
Log in to post new content in the forum.
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
what is the xxx.static.linuxgccrelease? by syoifczeri » Sat, 2015-10-31 04:09 |
2 |
5,423 |
by syoifczeri Mon, 2015-11-02 03:59 |
|
|
ERROR: Not complementary at positions by szcshr123 » Fri, 2021-02-26 05:58 |
2 |
1,366 |
by szcshr123 Fri, 2021-02-26 14:41 |
|
|
ligand docking by hong wei » Thu, 2021-11-18 05:01 |
2 |
955 |
by hong wei Thu, 2021-11-25 02:46 |
|
|
Different dG_separated from RAbD and InterfaceAnalyzer by brubin » Mon, 2022-12-19 13:58 |
2 |
366 |
by brubin Tue, 2022-12-20 13:26 |
|
|
activation of filters in rosetta3.0 or later by exchhattu » Thu, 2009-12-03 17:52 |
2 |
2,464 |
by exchhattu Mon, 2014-04-21 06:47 |
|
|
Using Relax to asses conformational space by glapidoth11 » Sat, 2011-07-30 05:09 |
2 |
2,631 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
homo-oligomeric proteins.............folddock+symmetry+abinito by anusmita_sahoo » Thu, 2010-04-29 02:59 |
2 |
3,320 |
by biofisikx Mon, 2014-04-21 06:47 |
|
|
RosettaCM: threading okay, but hybridize loses many secondary structure by lanselibai » Wed, 2021-06-23 13:51 |
2 |
918 |
by lanselibai Thu, 2021-06-24 10:16 |
|
|
Constraining a docking study by jos » Tue, 2011-10-18 05:26 |
2 |
2,366 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
"Local sequence-structure compatability" in "design of ideal protein structures" by petrikigor » Sun, 2012-12-02 09:25 |
2 |
2,811 |
by petrikigor Mon, 2014-04-21 06:47 |
|
|
changing the chain id by aneamtu » Tue, 2018-01-09 00:08 |
2 |
4,088 |
by aneamtu Thu, 2018-01-18 00:56 |
|
|
MPI optimization on TACC stampede2 HPC by rlwoltz » Tue, 2021-03-16 18:07 |
2 |
1,536 |
by rlwoltz Wed, 2021-03-24 22:36 |
|
|
error running rosetta3.1 demos by lvtun » Thu, 2010-10-21 20:43 |
2 |
2,692 |
by lvtun Mon, 2014-04-21 06:47 |
|
|
Rosetta atoms types for enzyme design by bharat_46010 » Thu, 2011-11-10 06:01 |
2 |
3,644 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
runtime error by exchhattu » Wed, 2010-03-03 02:54 |
2 |
2,269 |
by exchhattu Mon, 2014-04-21 06:47 |
|
|
Questions on energy oddities by pachecoj » Wed, 2014-10-15 13:26 |
2 |
2,395 |
by pachecoj Wed, 2014-10-15 15:12 |
|
|
Error score_scatter_plot.py by jrcf » Wed, 2015-12-30 05:46 |
2 |
3,051 |
by jrcf Fri, 2016-02-12 16:41 |
|
|
reporting IteratedConvergence status by sdh_h » Thu, 2016-08-04 10:05 |
2 |
2,182 |
by sdh_h Thu, 2016-08-04 11:22 |
|
|
what is minirosetta by Lindsay » Tue, 2012-04-10 07:48 |
2 |
9,382 |
by Lindsay Mon, 2014-04-21 06:47 |
|
|
generating 10 lowest energy structures from abinitio by isengupta13 » Fri, 2010-05-07 11:44 |
2 |
2,304 |
by ndousis Mon, 2014-04-21 06:47 |
|
|
Issue with Loop Analyzer Mover ouput by abhi_pe_acharya » Mon, 2018-04-30 09:55 |
2 |
1,694 |
by abhi_pe_acharya Mon, 2018-04-30 22:54 |
|
|
Modelling a loopless structure by jhbrown » Tue, 2011-11-22 11:39 |
2 |
2,671 |
by jhbrown Mon, 2014-04-21 06:47 |
|
|
docking mover(s) in rosetta by aaj » Mon, 2016-01-25 02:38 |
2 |
2,360 |
by aaj Mon, 2016-02-22 07:50 |
|
|
PUBLICATION using Rosetta as a method by phanvy » Thu, 2014-06-19 08:33 |
2 |
2,669 |
by phanvy Sun, 2014-06-22 23:29 |
|
|
Another request for help with restarts by jasnyderjr » Tue, 2015-08-18 12:14 |
2 |
2,592 |
by rmoretti Tue, 2015-08-18 17:11 |
|
|
rosetta run error by isengupta13 » Thu, 2010-06-03 19:00 |
2 |
2,785 |
by aminzia Fri, 2019-07-26 13:14 |
|
|
Error Atom_::dihedral_between_bonded_children by abiadak » Mon, 2012-07-30 06:34 |
2 |
3,589 |
by abiadak Mon, 2014-04-21 06:47 |
|
|
B3-protein design using rosettaScript movers by straore » Mon, 2015-03-16 05:05 |
2 |
2,512 |
by straore Fri, 2015-04-17 01:54 |
|
|
How do I add virtual atom to my cofactor (metal ion) in rosettadock? by monos_morpheus » Sat, 2011-02-05 21:24 |
2 |
3,008 |
by monos_morpheus Mon, 2014-04-21 06:47 |
|
|
Flag to not use PDB ligands by matteoferla » Wed, 2019-08-21 10:14 |
2 |
1,583 |
by matteoferla Wed, 2019-08-21 11:58 |
|
|
Ca-RMSD by jrcf » Mon, 2016-02-29 16:39 |
2 |
2,837 |
by jrcf Tue, 2016-05-03 17:40 |
|
|
Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:19 |
2 |
3,612 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
The following options have been set but have not yet been used by jrcf » Fri, 2015-10-09 10:48 |
2 |
3,373 |
by jrcf Fri, 2015-10-16 10:57 |
|
|
RifDock building error on Ubuntu 20.04，please help！ by guowuchen » Mon, 2022-03-28 03:53 |
2 |
1,118 |
by guowuchen Wed, 2022-03-30 04:20 |
|
|
keep crystal structure hydrogens by gw » Wed, 2011-07-20 03:54 |
2 |
2,951 |
by gw Mon, 2014-04-21 06:47 |
|
|
How to remove clashes in peptide bonds and proline residue? by Anatol » Fri, 2012-08-31 09:26 |
2 |
2,810 |
by Anatol Mon, 2014-04-21 06:47 |
|
|
make_fragments by ctaylor » Mon, 2009-09-21 12:41 |
2 |
2,575 |
by ctaylor Mon, 2014-04-21 06:47 |
|
|
Interface energy vs binding energy by Apiwat » Wed, 2014-02-05 00:47 |
2 |
5,302 |
by Apiwat Sat, 2014-02-08 01:41 |
|
|
-fake_native Error - not found in command line of rosetta 3.2.1 by vsjasion » Wed, 2011-10-05 12:01 |
2 |
3,005 |
by vsjasion Mon, 2014-04-21 06:47 |
|
|
mutate residue at termini by jarek » Fri, 2013-09-13 09:24 |
2 |
3,411 |
by jarek Mon, 2014-04-21 06:48 |
|
|
Cannot create cst files from upl files by road runner » Wed, 2015-11-11 22:07 |
2 |
2,421 |
by road runner Tue, 2015-12-01 10:08 |
|
|
constrain files tutorial by knutjbj » Fri, 2011-02-18 23:57 |
2 |
2,405 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ERROR: filtered_alignments.size() > 0 by jhbrown » Tue, 2012-01-17 13:28 |
2 |
2,238 |
by jhbrown Mon, 2014-04-21 06:47 |
|
|
Fix missing backbone residues by Matthys » Mon, 2010-05-03 09:03 |
2 |
3,326 |
by Matthys Mon, 2014-04-21 06:47 |
|
|
Error running design in 3.4 by inder » Thu, 2012-07-05 19:27 |
2 |
3,233 |
by inder Mon, 2014-04-21 06:47 |
|
|
smoothly kill a mpirun process by fred » Tue, 2014-02-18 06:06 |
2 |
4,889 |
by Ashafix Wed, 2014-02-19 06:53 |
|
|
Good baseline settings for side chain packing by pachecoj » Tue, 2015-01-13 19:25 |
2 |
3,820 |
by rmoretti Wed, 2015-01-21 10:05 |
|
|
rosetta compile by MA » Wed, 2017-04-26 00:46 |
2 |
1,909 |
by MA Thu, 2017-04-27 18:53 |
|
|
Explanation of constraint functions? by aloshbau » Mon, 2015-12-14 22:38 |
2 |
2,159 |
by aloshbau Mon, 2015-12-14 23:30 |
|
|
error in mol2 to params conversion for GAliganddocking by jalan » Wed, 2020-04-22 06:08 |
2 |
1,532 |
by jalan Thu, 2020-04-23 05:19 |
|
|
Chain name being read as residue by MarkusAurelius » Mon, 2021-03-22 11:19 |
2 |
1,054 |
by MarkusAurelius Mon, 2021-03-29 09:06 |
|
|
score.sc only shows total_score and with all zeros by johnnytam100 » Mon, 2022-06-06 20:04 |
2 |
554 |
by johnnytam100 Tue, 2022-06-07 19:18 |
|
|
Calculating SAP score using RosettaScripts by varunmc99 » Fri, 2023-05-12 11:03 |
2 |
147 |
by varunmc99 Fri, 2023-05-12 11:49 |
|
|
Predict the N-terminal of a protein by aliaselin » Mon, 2010-11-08 03:23 |
2 |
2,298 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
No structure mods allowed during scoring! error by jadolfbr » Wed, 2013-12-04 14:06 |
2 |
2,846 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
Peptide building by berk » Thu, 2015-07-30 06:53 |
2 |
2,609 |
by rmoretti Thu, 2015-08-06 09:21 |
|
|
disulfide bridges in loop modeling by pledor » Fri, 2010-08-06 06:49 |
2 |
2,860 |
by pledor Mon, 2014-04-21 06:47 |
|
|
Problems in Loop Modeling by jklett » Mon, 2009-10-19 07:26 |
2 |
2,923 |
by jklett Mon, 2014-04-21 06:47 |
|
|
Fold tree error by mansi » Tue, 2010-05-18 07:43 |
2 |
3,544 |
by mansi Mon, 2014-04-21 06:47 |
|
|
How to allow rosetta to recognize the ASP and protonated ASP? by Jeffrey_Chen » Mon, 2014-03-24 20:34 |
2 |
3,491 |
by Jeffrey_Chen Tue, 2014-03-25 23:06 |
|
|
Free FSC score for validating refinement by ahmadkhalifa » Thu, 2018-05-10 05:53 |
2 |
2,027 |
by ahmadkhalifa Fri, 2018-06-29 07:54 |
|
|
Creation of core.* file in current running directory by alejandro » Tue, 2011-12-06 06:19 |
2 |
2,825 |
by alejandro Mon, 2014-04-21 06:47 |
|
|
Multigraft by bo » Tue, 2013-12-24 18:06 |
2 |
2,861 |
by Sergey Menis Mon, 2014-04-21 06:48 |
|
|
Meaning of a couple terms? by aloshbau » Sun, 2016-02-07 16:48 |
2 |
2,174 |
by aloshbau Sun, 2016-02-14 20:14 |
|
|
Rosetta Double changing mmCIF chain ID by Victor Tobiasson » Thu, 2021-05-13 07:57 |
2 |
1,105 |
by Victor Tobiasson Thu, 2021-05-13 08:33 |
|
|
Connecting 2 Domains Via Non-Flexible Linker by jurkm » Mon, 2011-09-05 06:10 |
2 |
5,332 |
by kbuhr Tue, 2015-07-14 04:30 |
|
|
Symmetric Processing for evaluating side-chain of chi angle by qlj » Wed, 2012-10-10 04:08 |
2 |
2,683 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
minimum number of nstruct to build at 65% homolgy by MRH » Thu, 2013-08-22 07:29 |
2 |
2,687 |
by MRH Mon, 2014-04-21 06:48 |
|
|
Working through tutorials: expected output scorces differ from calculated results by j.schmue » Sat, 2020-01-18 13:16 |
2 |
1,436 |
by j.schmue Tue, 2020-01-28 13:31 |
|
|
Fragment file viewers by MajorID » Fri, 2012-02-24 20:57 |
2 |
2,467 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Cluster application, How does it sort decoys by energy? by Apiwat » Wed, 2014-04-16 01:52 |
2 |
2,586 |
by Apiwat Thu, 2014-04-17 09:56 |
|
|
"caught exception" for PDB with membrane "DUM" residues by nitroamos » Wed, 2018-05-30 08:35 |
2 |
3,260 |
by Awagner7 Tue, 2020-04-28 10:51 |
|
|
error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Thu, 2016-06-30 11:06 |
2 |
3,611 |
by rmoretti Tue, 2016-07-12 08:18 |
|
|
Intermediate file insertion by exchhattu » Wed, 2009-09-02 18:44 |
2 |
2,400 |
by exchhattu Mon, 2014-04-21 06:47 |
|
|
RosettaDOM by ndousis » Sun, 2010-12-12 01:08 |
2 |
2,888 |
by ndousis Mon, 2014-04-21 06:47 |
|
|
is there a preferred way to enforce an hydrogen bond ? by logandonaldson » Wed, 2013-03-20 13:14 |
2 |
2,493 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Fragment picker by phanvy » Mon, 2014-12-08 04:25 |
2 |
2,819 |
by phanvy Wed, 2014-12-10 00:17 |
|
|
InterfaceAnalyzer atom subset by Parker.deWaal » Sun, 2016-03-13 13:41 |
2 |
2,419 |
by rmoretti Mon, 2016-03-14 07:58 |
|
|
Data Check for a newb by ac.research » Sun, 2017-03-12 23:42 |
2 |
2,039 |
by ac.research Fri, 2017-03-31 07:36 |
|
|
ERROR: Unable to open weights/patch file by almeida85 » Tue, 2022-08-09 05:33 |
2 |
461 |
by almeida85 Thu, 2022-08-11 00:32 |
|
|
weird prolines with hydroxyls from fixbb.linuxgccrelease by louisclark » Wed, 2010-08-25 15:01 |
2 |
2,505 |
by louisclark Mon, 2014-04-21 06:47 |
|
|
Having trouble producing a .pdb file from a silent output file after running abinitio relax by burkheadlab » Wed, 2011-03-09 12:48 |
2 |
2,662 |
by burkheadlab Mon, 2014-04-21 06:47 |
|
|
Adding noncanonical amino acid (PCA) to Rosetta 3 by JuliusSu » Fri, 2014-08-01 11:23 |
2 |
3,614 |
by JuliusSu Fri, 2014-08-08 02:07 |
|
|
Rosetta Dock with MPI / PBS by edpryor » Wed, 2012-09-05 11:04 |
3 |
5,945 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
When does Rosetta switch from centroid to FA mode? by MarkW » Fri, 2015-07-03 04:48 |
3 |
3,128 |
by rmoretti Sun, 2015-07-05 14:28 |
|
|
why energy is positive? by albumns » Tue, 2014-12-23 00:05 |
3 |
3,937 |
by rmoretti Mon, 2015-02-09 11:21 |
|
|
what is 05.2009 ideal coordinates by Lindsay » Tue, 2014-09-23 20:36 |
3 |
3,069 |
by rmoretti Mon, 2014-09-29 13:45 |
|
|
Can I thread a two chained structure in RosettaCM? by ahmadkhalifa » Mon, 2018-01-08 09:41 |
3 |
2,946 |
by aaxx Wed, 2019-11-06 01:44 |
|
|
Rosetta-based projects using and licensing by SergeyP » Fri, 2018-10-26 15:45 |
3 |
2,686 |
by SergeyP Mon, 2018-11-12 09:19 |
|
|
Is it better to have smaller nstruct but many runs? by Loki01 » Mon, 2018-11-19 11:50 |
3 |
2,096 |
by smlewis Mon, 2018-11-19 13:20 |
|
|
how build (N-terminal 17 residues) structre /fragment file generation by venkatazb » Wed, 2016-07-27 23:56 |
3 |
2,968 |
by smlewis Fri, 2016-07-29 07:43 |
|
|
Design constraints on pairs of residues by SenyorDrew » Mon, 2017-10-02 07:25 |
3 |
2,769 |
by SenyorDrew Mon, 2017-11-13 11:44 |
|
|
make_fragments by sumukh21 » Wed, 2011-02-23 09:29 |
3 |
3,405 |
by sumukh21 Mon, 2014-04-21 06:47 |
|
|
Problem with HETATM entries in PDB file by asmi » Fri, 2011-05-20 10:17 |
3 |
5,246 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Problems with output control by Sunyp_IM » Thu, 2017-06-22 15:30 |
3 |
3,408 |
by rmoretti Wed, 2017-06-28 01:33 |
|
|
Hydrogen bond detection and shape complementarity by sujigeorge1979 » Fri, 2019-06-14 02:39 |
3 |
2,003 |
by sujigeorge1979 Thu, 2019-06-27 01:30 |
|
|
RosettaHoles? by kbala » Thu, 2009-07-30 16:52 |
3 |
3,374 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
"CEN" atom in the pdb file by wszjzhang » Wed, 2010-03-17 14:35 |
3 |
4,270 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
|
|
Protein folding using Monte Carlo derived techniques and implicit solvation by hefeweizen » Tue, 2013-12-10 06:30 |
3 |
3,692 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Molecular oxygen by matteoferla » Sat, 2018-02-24 06:05 |
3 |
2,864 |
by matteoferla Mon, 2018-02-26 02:05 |
Log in to post new content in the forum.
