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Rosetta 3 - Applications
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Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
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3,097 |
by dswhit Tue, 2015-04-21 10:14 |
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Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans? by ccottrell » Tue, 2020-05-05 20:30 |
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1,722 |
by jadolfbr Wed, 2020-05-06 11:37 |
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Can rosetta generate a centroid model based on the rna sequence? by yels » Fri, 2021-03-26 04:06 |
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1,469 |
by yels Wed, 2021-03-31 18:31 |
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Can remodel really handle multiple insertions in one simulation? by lanselibai » Sat, 2019-12-28 12:51 |
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542 |
by lanselibai Sat, 2019-12-28 12:51 |
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can remodel add loops in one chain in multichain PDB structure? by ksteczk » Fri, 2020-05-01 06:26 |
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820 |
by matteoferla Mon, 2020-05-04 01:43 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
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3,231 |
by smlewis Mon, 2014-04-21 06:47 |
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Can I use rosetta binaries built in one linux system to another linux system? by Danielsebas » Wed, 2019-09-18 06:49 |
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905 |
by rmoretti Wed, 2019-09-18 10:36 |
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Can I change high-resolution filter in SymDock by attesor » Fri, 2015-10-23 07:35 |
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2,103 |
by attesor Mon, 2015-10-26 09:01 |
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Can I believe the antibody design result? by Sunyp_IM » Mon, 2020-11-30 03:29 |
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1,758 |
by jadolfbr Sun, 2020-12-06 17:41 |
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Can I assume the outputs from different runs are from a same batch? by lanselibai » Mon, 2014-11-03 06:34 |
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3,697 |
by lanselibai Mon, 2014-11-03 13:15 |
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can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
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1,087 |
by xinmiaohe Mon, 2019-08-26 18:16 |
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Can anybody suggests some flags to run Rifdock? by Hyunmi Song » Sun, 2022-01-23 16:45 |
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283 |
by Hyunmi Song Sun, 2022-01-23 16:45 |
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Camelid antibody (VHH) modelling by Ayoub Ksouri » Tue, 2017-04-04 22:52 |
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7,902 |
by Ayoub Ksouri Wed, 2017-04-19 15:16 |
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Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
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2,370 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
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Calbur vs Energy Based Clustering by Swillard » Sun, 2018-07-01 13:24 |
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1,383 |
by rmoretti Fri, 2018-08-03 08:26 |
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C-termini remodelling of dimeric structure removes second chain by LeonhardJS » Wed, 2021-10-13 06:23 |
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348 |
by LeonhardJS Fri, 2021-11-12 01:20 |
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BuildPeptide - Using Phosphorylated and Sulfated Tyrosine by jlawrie » Thu, 2020-09-03 14:29 |
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811 |
by cryosky Mon, 2021-03-01 21:37 |
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Building loop extensions in a membrane protein with Remodel by benhardy » Tue, 2020-06-02 08:21 |
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1,300 |
by benhardy Sun, 2020-09-20 11:15 |
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building a protein-dna homology model via cm_rosetta by y_atsmonraz » Wed, 2021-10-20 23:11 |
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578 |
by y_atsmonraz Tue, 2021-11-02 01:47 |
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BUG REPORT: Remodel Resfile ERROR: LEU was added more than once? by daniloboskovic » Wed, 2020-04-29 01:17 |
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1,052 |
by daniloboskovic Wed, 2020-04-29 05:51 |
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Bug Report - Encoding issue by daniloboskovic » Tue, 2020-08-04 07:02 |
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404 |
by daniloboskovic Tue, 2020-08-04 07:02 |
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broker domain insertion by dhirajks » Sun, 2018-05-06 12:55 |
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1,100 |
by rmoretti Fri, 2018-05-18 12:28 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:30 |
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488 |
by taylorjones Wed, 2021-06-09 16:38 |
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blast database error by jessye » Sun, 2017-12-03 23:59 |
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1,292 |
by smlewis Mon, 2017-12-04 12:18 |
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Binding energy contribution broken down by residue by brspurri » Tue, 2013-07-23 12:47 |
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2,357 |
by rmoretti Mon, 2014-04-21 06:48 |
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behind threading protocol by fred » Tue, 2011-10-25 05:37 |
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1,866 |
by fred Mon, 2014-04-21 06:47 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
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2,040 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
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4,236 |
by protos_heis Mon, 2014-04-21 06:47 |
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backrub application, resfile, and pivot_residues by tylerborrman » Tue, 2016-12-06 14:46 |
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892 |
by tylerborrman Tue, 2016-12-06 14:46 |
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auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
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3,320 |
by beowulfey Tue, 2015-06-23 16:10 |
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autoNOE peak lists by aep » Thu, 2015-08-06 06:15 |
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1,698 |
by sgourn Tue, 2015-08-18 18:25 |
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assymetric dymer modelling with comparative and ab initio by marcia » Mon, 2013-10-14 08:33 |
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4,088 |
by rmoretti Mon, 2014-04-21 06:48 |
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ArchiveManager -- spinning down by Marius1987 » Fri, 2016-12-23 03:10 |
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1,363 |
by smlewis Fri, 2016-12-23 07:04 |
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appropriate sampling for protein docking to a multi chain assembly by SWM » Fri, 2020-01-24 11:22 |
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493 |
by SWM Fri, 2020-01-24 11:22 |
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application for affinity optimization by wentlewi » Fri, 2020-03-13 03:24 |
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606 |
by wentlewi Fri, 2020-03-13 03:24 |
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Any progress on getting intermediate structures during a design? by broomsday » Mon, 2020-03-16 06:46 |
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1,109 |
by vmulligan Tue, 2020-03-17 11:35 |
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Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
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2,346 |
by johnnytam100 Sun, 2019-03-03 23:42 |
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antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
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1,756 |
by jadolfbr Sun, 2020-03-01 14:54 |
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antibody.mpi.linuxgccrelease some antibodies failing to model by drewaight » Mon, 2020-11-02 17:07 |
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637 |
by drewaight Mon, 2020-11-02 17:07 |
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antibody.linuxgccrelease- output models don't have the same sequence as the input fasta by agctomer » Thu, 2021-01-21 15:35 |
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1,150 |
by agctomer Sun, 2021-01-31 01:06 |
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Antibody protocol: unusual antibodies, and chainbreaks by Cyril Cros » Mon, 2014-07-21 17:03 |
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4,944 |
by Cyril Cros Tue, 2014-11-25 08:21 |
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antibody protocol fails by hamedkhakzad » Mon, 2019-08-19 07:43 |
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909 |
by smlewis Tue, 2019-10-22 09:45 |
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Antibody Modelling by luicui » Mon, 2017-01-23 21:30 |
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1,736 |
by smlewis Mon, 2017-02-06 20:46 |
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antibody modeling error by mxp » Mon, 2019-09-16 18:29 |
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1,247 |
by mxp Mon, 2019-09-23 01:40 |
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Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
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4,019 |
by rmoretti Wed, 2015-09-09 12:08 |
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antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages by AlfredoKCL » Sun, 2021-02-28 16:42 |
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691 |
by AlfredoKCL Mon, 2021-03-01 04:07 |
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Antibody Docking application by Maryam_tabasinezhad » Sat, 2015-09-05 09:58 |
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1,879 |
by jadolfbr Wed, 2015-09-09 12:35 |
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antibody - sequence position requested was 0 by jremmel » Mon, 2021-09-27 12:26 |
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382 |
by nannemdp Mon, 2021-09-27 14:22 |
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analysis of clustering by loris.moretti » Thu, 2012-04-19 02:52 |
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6,099 |
by rmoretti Mon, 2014-04-21 06:47 |
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An error with score app by Genta » Tue, 2019-10-29 18:46 |
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776 |
by Genta Tue, 2019-10-29 18:46 |
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ambiguous constraints by shrutikhare » Mon, 2014-05-12 04:42 |
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2,805 |
by rmoretti Mon, 2014-05-12 08:25 |
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Altering substrate specificity by bp » Thu, 2016-12-22 02:45 |
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1,969 |
by bp Thu, 2016-12-22 07:54 |
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Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
3 |
2,387 |
by rmoretti Thu, 2017-08-24 11:00 |
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algebric library for rosetta by yigallah » Mon, 2014-12-15 08:46 |
0 |
1,066 |
by yigallah Mon, 2014-12-15 08:46 |
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Alanine Scanning for 1 Protein (no interface) by mags33 » Fri, 2019-10-25 10:08 |
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1,545 |
by mags33 Wed, 2019-11-06 09:35 |
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Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
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3,030 |
by rmoretti Mon, 2014-04-21 06:48 |
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Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
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2,495 |
by brspurri Thu, 2017-06-01 10:58 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
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854 |
by everyday847 Fri, 2019-08-23 04:08 |
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Adding bridged water interaction in constraint file by purvi24 » Thu, 2019-02-28 07:01 |
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3,387 |
by purvi24 Mon, 2019-03-11 06:43 |
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Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
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1,836 |
by jadolfbr Fri, 2014-10-31 09:00 |
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AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
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914 |
by vmulligan Thu, 2019-06-13 15:01 |
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AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
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1,172 |
by vmulligan Thu, 2019-06-13 14:59 |
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Add missing residues in loop modeling by exchhattu » Thu, 2013-06-20 17:38 |
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3,105 |
by smlewis Mon, 2014-04-21 06:48 |
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Abrelax - Dunbrack02.lib.bin missing by omirus » Sun, 2011-09-18 06:30 |
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4,113 |
by smlewis Mon, 2014-04-21 06:47 |
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about “protein mimic designer” by sia » Wed, 2022-04-27 19:59 |
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78 |
by sia Wed, 2022-04-27 19:59 |
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About scorefunction. by Run » Mon, 2013-09-09 23:08 |
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6,060 |
by rmoretti Mon, 2014-04-21 06:48 |
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About loophash and batchrelax. by Run » Mon, 2013-07-22 23:54 |
14 |
10,493 |
by Run Mon, 2014-04-21 06:48 |
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Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
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2,802 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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AbinitioRelax with native fragments by ks » Mon, 2016-09-05 03:03 |
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4,148 |
by ks Mon, 2016-09-12 03:14 |
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AbinitioRelax usage (3.4) by atruong » Fri, 2012-10-12 13:38 |
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8,805 |
by atruong Mon, 2014-04-21 06:47 |
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AbinitioRelax Disulfide Bonds are not being retained by brspurri » Wed, 2011-09-28 13:55 |
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3,770 |
by parmef Mon, 2014-04-21 06:47 |
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AbinitioRelax detect_disulf_tolerance by aarono » Tue, 2020-06-02 00:13 |
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590 |
by aarono Tue, 2020-06-02 00:13 |
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AbinitioRelax - Error with flags by jmschu » Wed, 2018-11-21 17:36 |
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1,514 |
by rmoretti Fri, 2018-11-23 07:59 |
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Abinitio.relax problem on centos by krlitros87 » Wed, 2014-09-24 11:27 |
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4,829 |
by jadolfbr Tue, 2014-10-07 16:05 |
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Abinitio the Broker protocol by ac.research » Sun, 2019-03-24 03:56 |
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1,015 |
by rmoretti Fri, 2019-04-05 00:18 |
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Abinitio Relax Error from -kill_hairpins by attesor » Tue, 2014-10-28 05:33 |
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6,016 |
by rmoretti Tue, 2014-11-04 10:28 |
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Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
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2,284 |
by allan.ferrari Fri, 2015-08-28 12:07 |
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Abinitio error: std::out_of_range: basic_string by Harley Worthy » Tue, 2017-10-31 15:20 |
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1,632 |
by Harley Worthy Thu, 2017-11-02 08:53 |
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Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9 by rlwoltz » Tue, 2012-09-18 14:04 |
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13,173 |
by RAGHURAMAN Fri, 2014-08-08 02:19 |
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Abinitio doesn't run but does not give output or error by Irving » Fri, 2016-10-28 10:04 |
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4,444 |
by rmoretti Mon, 2017-01-23 08:52 |
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Abinitio (3.4) Error: no fragment to compute secondary structure by skovacs » Tue, 2012-09-18 13:49 |
6 |
6,092 |
by skovacs Mon, 2014-04-21 06:47 |
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Ab-initio peptide-protein docking by suhail » Sun, 2013-06-23 16:20 |
9 |
10,079 |
by rmoretti Fri, 2016-04-29 08:57 |
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Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
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2,964 |
by rmoretti Mon, 2014-04-21 06:48 |
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ab inito memberane(error in alignblast.pl) by kingljy » Tue, 2011-05-03 23:41 |
6 |
5,855 |
by karthishanmugam Mon, 2014-04-21 06:47 |
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Ab initio with multiple metal ions by cheyuk » Sun, 2013-12-29 17:58 |
19 |
16,670 |
by masterofpuppets Tue, 2015-01-27 04:26 |
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ab initio protein prediction using homologs by justin » Mon, 2012-02-13 07:52 |
5 |
4,578 |
by justin Mon, 2014-04-21 06:47 |
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ab initio modelling - what to do next? by krlitros87 » Thu, 2014-10-16 13:05 |
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2,735 |
by krlitros87 Wed, 2014-10-22 09:31 |
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ab initio membrane error (frag9 file...) by almeida » Mon, 2012-07-30 08:53 |
9 |
7,770 |
by rmoretti Tue, 2014-08-12 08:15 |
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Ab Initio folding with HEM ligand molecule by jseco » Fri, 2021-03-05 06:49 |
0 |
399 |
by jseco Mon, 2021-03-08 03:40 |
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ab initio by malkeet.singh » Thu, 2018-05-10 05:34 |
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2,474 |
by malkeet.singh Mon, 2018-05-21 04:26 |
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a trouble during floppytail modeling by chenchaozhao » Tue, 2011-03-15 03:59 |
39 |
30,737 |
by smlewis Thu, 2017-06-01 10:02 |
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A question on the logic of enzyme design by agulsevin » Thu, 2013-06-13 08:10 |
2 |
3,353 |
by agulsevin Mon, 2014-04-21 06:48 |
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a question about ligand docking by yzhou » Wed, 2012-05-30 18:57 |
5 |
3,770 |
by yzhou Mon, 2014-04-21 06:47 |
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A problem with RosettaLigand by Rosettasz » Fri, 2013-07-19 16:09 |
16 |
15,576 |
by Rosettasz Mon, 2014-04-21 06:48 |
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A problem with "molfile_to_params.py" by Rosettasz » Mon, 2013-08-19 19:35 |
10 |
8,862 |
by egecav Mon, 2021-01-18 05:41 |
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A problem with "make_fragments.pl" script dependencies by Corvin » Fri, 2019-08-16 04:30 |
2 |
1,648 |
by Corvin Tue, 2019-08-27 00:46 |
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/database folder after running "install_dependencies.pl" size 657 GB? by Danielsebas » Tue, 2019-09-03 03:32 |
1 |
854 |
by danpf Tue, 2019-09-03 10:15 |
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-score_app:linmin flag not working by fglaser » Tue, 2011-03-01 06:04 |
5 |
4,347 |
by smlewis Mon, 2014-04-21 06:47 |
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-loops:fa_input not found in command line top-level context by swarekwood » Thu, 2017-08-24 03:15 |
2 |
1,892 |
by swarekwood Fri, 2017-08-25 05:08 |
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-kill_hairpin error by jadolfbr » Wed, 2011-10-05 18:53 |
11 |
13,827 |
by rmoretti Mon, 2015-09-28 15:00 |
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