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Rosetta 3 - Applications

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Normal topic Comparative Modeling Tutorial
by code_Monkey » Thu, 2021-03-04 12:35
1
709 by rmoretti
Fri, 2021-03-05 09:35
Normal topic Comparative Modeling Templates for Protein with Multiple Domains
by Morrian_Lynn » Wed, 2020-03-04 10:42
0
662 by Morrian_Lynn
Wed, 2020-03-04 10:42
Normal topic Comparative modeling stops with "no more batches to process... " / no output
by eskici » Tue, 2012-08-28 12:13
6
5,557 by eskici
Mon, 2014-04-21 06:47
Normal topic comparative modeling of protein-ligand complex
by tevang » Mon, 2013-09-09 09:06
3
3,868 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Comparative modeling of metalloproteins
by ctqwong » Sun, 2020-07-12 13:51
3
1,530 by ctqwong
Mon, 2020-07-27 01:48
Normal topic comparative modeling of a homodimer
by banshee » Mon, 2017-01-09 18:34
1
2,023 by rmoretti
Wed, 2017-01-11 13:00
Normal topic Comparative modeling
by MRH » Mon, 2013-08-19 23:08
1
2,197 by smlewis
Mon, 2014-04-21 06:48
Normal topic Collecting all decoys from batch files
by aep » Sun, 2016-08-07 12:23
2
2,112 by aep
Sat, 2016-08-13 13:03
Normal topic Coding denovo prediction from density maps in PyRosetta
by ahmadkhalifa » Tue, 2018-04-10 11:43
1
1,274 by rmoretti
Tue, 2018-04-10 15:29
Normal topic cm_scripts
by sn » Wed, 2018-02-14 11:00
1
1,390 by rmoretti
Wed, 2018-02-21 15:21
Normal topic clustering output file has few structures
by fabiotrovato » Mon, 2020-08-17 11:37
0
549 by fabiotrovato
Mon, 2020-08-17 11:37
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
2,682 by Loki01
Thu, 2018-04-12 08:28
Normal topic clustering in RosettaRemodel
by cheyuk » Wed, 2014-04-23 03:09
3
3,548 by rmoretti
Mon, 2014-05-12 08:45
Normal topic clustering
by ays » Tue, 2014-09-30 08:26
2
2,884 by rmoretti
Mon, 2014-10-06 16:00
Normal topic cluster.mpi.linuxgccrelease failed
by fred » Mon, 2014-02-24 12:11
3
7,456 by fred
Thu, 2014-03-27 11:29
Normal topic cluster.mpi running in MPI mode?
by sacch » Fri, 2011-11-18 23:30
2
3,989 by sacch
Mon, 2014-04-21 06:47
Normal topic cluster.linuxgccrelease Killed error
by samuelrpita » Fri, 2015-11-20 05:56
1
2,043 by rmoretti
Tue, 2015-11-24 16:07
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
0
1,740 by MajorID
Mon, 2014-04-21 06:47
Normal topic cluster error
by sudhar » Fri, 2011-06-17 05:58
1
2,606 by rmoretti
Mon, 2014-04-21 06:47
Normal topic clean_pdb.py of Rosetta VS cleanATOM of PyRosetta
by lanselibai » Wed, 2014-09-24 03:02
2
4,501 by lanselibai
Wed, 2014-09-24 13:21
Normal topic clean_pdb not working
by Andre Serobian » Thu, 2020-07-23 04:48
3
1,766 by rmoretti
Tue, 2020-07-28 08:24
Normal topic clashes created with enzdes
by listofdina » Mon, 2021-08-02 06:51
0
515 by listofdina
Mon, 2021-08-02 06:51
Normal topic Choosing weight file for interface design?
by johnnytam100 » Tue, 2019-05-07 00:47
2
1,697 by johnnytam100
Tue, 2019-05-21 22:33
Normal topic Chemically bound ligand connection error
by tsztain » Tue, 2019-01-01 18:40
2
1,804 by tsztain
Mon, 2019-02-18 09:55
Normal topic Checkpoint with rosetta3.4
by AmelieH » Mon, 2014-12-01 15:51
1
2,221 by rmoretti
Wed, 2014-12-03 19:07
Normal topic charge grid in rosetta ligand docking using rosetta script
by syntekabio2019 » Mon, 2022-01-17 23:53
0
522 by syntekabio2019
Mon, 2022-01-17 23:53
Normal topic Changing scoring function for fixbb protocol
by mdyini » Sat, 2012-07-07 18:43
4
3,667 by mdyini
Mon, 2014-04-21 06:47
Normal topic Changing rosetta scoring to favour less hydrophobic areas
by daniloboskovic » Thu, 2020-05-21 03:03
1
874 by vmulligan
Thu, 2020-05-21 18:33
Normal topic change number of output pose files written out (default=50) in ligand docking XML script
by hdelrisco » Fri, 2019-10-18 13:50
2
1,365 by hdelrisco
Fri, 2019-10-18 17:16
Normal topic Centroid mode minimization
by Martin Floor » Tue, 2020-01-21 07:34
2
1,464 by Martin Floor
Tue, 2020-01-21 11:15
Normal topic cartfrag_overlap error while running hybridize protocol
by sn » Thu, 2017-12-21 10:24
2
1,806 by dnamkr
Mon, 2019-12-30 11:43
Normal topic cartesian_ddg output
by cossio » Thu, 2018-10-11 14:58
2
2,626 by cossio
Fri, 2018-10-12 04:43
Normal topic cartesian_ddg error: "Assertion `files.size() == 1` failed."
by cossio » Fri, 2018-05-11 09:59
2
2,546 by cossio
Fri, 2018-05-18 09:51
Normal topic cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues
by ValentinaSora » Sun, 2020-05-24 12:32
0
892 by ValentinaSora
Sun, 2020-05-24 12:32
Normal topic CartesianRefiner compilation problem
by DmitriiN » Tue, 2015-12-15 08:52
1
1,734 by rmoretti
Tue, 2015-12-15 09:48
Normal topic Cartesian-space refinement
by sjyang7 » Wed, 2017-05-31 19:34
5
4,645 by sjyang7
Sat, 2017-06-03 06:09
Normal topic Cannot get a negative score after relax
by kxiao » Tue, 2014-01-28 22:28
6
7,033 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Can't generate a cst file to use with ddg_monomer application
by ctqwong » Sat, 2021-03-13 03:53
6
1,961 by ctqwong
Thu, 2021-03-18 02:04
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56
0
1,580 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Can't append or prepend with pepspec
by danzinho » Tue, 2015-03-31 01:19
3
3,380 by dswhit
Tue, 2015-04-21 10:14
Normal topic Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans?
by ccottrell » Tue, 2020-05-05 20:30
5
2,134 by jadolfbr
Wed, 2020-05-06 11:37
Normal topic Can rosetta generate a centroid model based on the rna sequence?
by yels » Fri, 2021-03-26 04:06
7
2,018 by yels
Wed, 2021-03-31 18:31
Normal topic Can remodel really handle multiple insertions in one simulation?
by lanselibai » Sat, 2019-12-28 12:51
0
661 by lanselibai
Sat, 2019-12-28 12:51
Normal topic can remodel add loops in one chain in multichain PDB structure?
by ksteczk » Fri, 2020-05-01 06:26
1
1,044 by matteoferla
Mon, 2020-05-04 01:43
Normal topic Can only relax one structure at a time
by lah435 » Wed, 2012-12-12 01:55
3
3,482 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can I use rosetta binaries built in one linux system to another linux system?
by Danielsebas » Wed, 2019-09-18 06:49
1
1,121 by rmoretti
Wed, 2019-09-18 10:36
Normal topic Can I change high-resolution filter in SymDock
by attesor » Fri, 2015-10-23 07:35
2
2,317 by attesor
Mon, 2015-10-26 09:01
Normal topic Can I believe the antibody design result?
by Sunyp_IM » Mon, 2020-11-30 03:29
6
2,231 by jadolfbr
Sun, 2020-12-06 17:41
Normal topic Can I assume the outputs from different runs are from a same batch?
by lanselibai » Mon, 2014-11-03 06:34
4
4,061 by lanselibai
Mon, 2014-11-03 13:15
Normal topic can anyone help me correct this script to do alanine scanning
by xinmiaohe » Mon, 2019-08-26 17:23
1
1,289 by xinmiaohe
Mon, 2019-08-26 18:16
Normal topic Can anybody suggests some flags to run Rifdock?
by Hyunmi Song » Sun, 2022-01-23 16:45
0
674 by Hyunmi Song
Sun, 2022-01-23 16:45
Normal topic Camelid antibody (VHH) modelling
by Ayoub Ksouri » Tue, 2017-04-04 22:52
13
8,809 by Ayoub Ksouri
Wed, 2017-04-19 15:16
Normal topic Calculate_protein_protein_ddg
by kamau » Fri, 2015-01-30 11:27
2
2,600 by deepanshuiitb
Thu, 2015-03-19 19:14
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
1
1,545 by rmoretti
Fri, 2018-08-03 08:26
Normal topic C-termini remodelling of dimeric structure removes second chain
by LeonhardJS » Wed, 2021-10-13 06:23
1
694 by LeonhardJS
Fri, 2021-11-12 01:20
Normal topic BuildPeptide - Using Phosphorylated and Sulfated Tyrosine
by jlawrie » Thu, 2020-09-03 14:29
1
1,009 by cryosky
Mon, 2021-03-01 21:37
Normal topic Building loop extensions in a membrane protein with Remodel
by benhardy » Tue, 2020-06-02 08:21
2
1,585 by benhardy
Sun, 2020-09-20 11:15
Normal topic building a protein-dna homology model via cm_rosetta
by y_atsmonraz » Wed, 2021-10-20 23:11
4
1,181 by y_atsmonraz
Tue, 2021-11-02 01:47
Normal topic BUG REPORT: Remodel Resfile ERROR: LEU was added more than once?
by daniloboskovic » Wed, 2020-04-29 01:17
2
1,318 by daniloboskovic
Wed, 2020-04-29 05:51
Normal topic Bug Report - Encoding issue
by daniloboskovic » Tue, 2020-08-04 07:02
0
520 by daniloboskovic
Tue, 2020-08-04 07:02
Normal topic broker domain insertion
by dhirajks » Sun, 2018-05-06 12:55
1
1,276 by rmoretti
Fri, 2018-05-18 12:28
Normal topic Blast error for rosetta antibody: No argument value given for Query file
by dngusdnr1 » Tue, 2021-06-08 17:30
1
738 by taylorjones
Wed, 2021-06-09 16:38
Normal topic blast database error
by jessye » Sun, 2017-12-03 23:59
1
1,501 by smlewis
Mon, 2017-12-04 12:18
Normal topic Binding energy contribution broken down by residue
by brspurri » Tue, 2013-07-23 12:47
1
2,529 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Benchmarking Rosetta DDG Methods
by sareeves96 » Fri, 2022-07-29 09:55
0
318 by sareeves96
Fri, 2022-07-29 09:55
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
0
1,979 by fred
Mon, 2014-04-21 06:47
Normal topic Behavior of nstruct
by johnnytam100 » Wed, 2019-05-15 22:22
3
2,434 by johnnytam100
Tue, 2019-05-21 20:48
Normal topic Backrub Params Files
by protos_heis » Tue, 2012-09-18 06:15
4
4,567 by protos_heis
Mon, 2014-04-21 06:47
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
0
1,013 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic auto_setup_metals flag with loop modeling application fails
by beowulfey » Wed, 2015-06-10 07:44
3
3,620 by beowulfey
Tue, 2015-06-23 16:10
Normal topic autoNOE peak lists
by aep » Thu, 2015-08-06 06:15
1
1,886 by sgourn
Tue, 2015-08-18 18:25
Normal topic assymetric dymer modelling with comparative and ab initio
by marcia » Mon, 2013-10-14 08:33
3
4,377 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ArchiveManager -- spinning down
by Marius1987 » Fri, 2016-12-23 03:10
1
1,534 by smlewis
Fri, 2016-12-23 07:04
Normal topic appropriate sampling for protein docking to a multi chain assembly
by SWM » Fri, 2020-01-24 11:22
0
607 by SWM
Fri, 2020-01-24 11:22
Normal topic application for affinity optimization
by wentlewi » Fri, 2020-03-13 03:24
0
735 by wentlewi
Fri, 2020-03-13 03:24
Normal topic Any progress on getting intermediate structures during a design?
by broomsday » Mon, 2020-03-16 06:46
2
1,383 by vmulligan
Tue, 2020-03-17 11:35
Normal topic Any backrub expert?
by johnnytam100 » Fri, 2019-03-01 01:58
4
2,751 by johnnytam100
Sun, 2019-03-03 23:42
Normal topic antibody_numbering_converter cannot recognize the IMGT scheme
by cryosky » Sat, 2020-02-29 23:12
4
2,180 by jadolfbr
Sun, 2020-03-01 14:54
Normal topic antibody.mpi.linuxgccrelease some antibodies failing to model
by drewaight » Mon, 2020-11-02 17:07
0
830 by drewaight
Mon, 2020-11-02 17:07
Normal topic antibody.linuxgccrelease- output models don't have the same sequence as the input fasta
by agctomer » Thu, 2021-01-21 15:35
4
1,515 by agctomer
Sun, 2021-01-31 01:06
Normal topic Antibody protocol: unusual antibodies, and chainbreaks
by Cyril Cros » Mon, 2014-07-21 17:03
5
5,344 by Cyril Cros
Tue, 2014-11-25 08:21
Normal topic antibody protocol fails
by hamedkhakzad » Mon, 2019-08-19 07:43
1
1,097 by smlewis
Tue, 2019-10-22 09:45
Normal topic Antibody Modelling
by luicui » Mon, 2017-01-23 21:30
1
1,916 by smlewis
Mon, 2017-02-06 20:46
Normal topic antibody modeling error
by mxp » Mon, 2019-09-16 18:29
2
1,508 by mxp
Mon, 2019-09-23 01:40
Normal topic Antibody modeling
by Maryam_tabasinezhad » Fri, 2015-09-04 11:00
4
4,349 by rmoretti
Wed, 2015-09-09 12:08
Normal topic antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages
by AlfredoKCL » Sun, 2021-02-28 16:42
2
929 by AlfredoKCL
Mon, 2021-03-01 04:07
Normal topic Antibody Docking application
by Maryam_tabasinezhad » Sat, 2015-09-05 09:58
1
2,048 by jadolfbr
Wed, 2015-09-09 12:35
Normal topic antibody - sequence position requested was 0
by jremmel » Mon, 2021-09-27 12:26
1
773 by nannemdp
Mon, 2021-09-27 14:22
Normal topic analysis of clustering
by loris.moretti » Thu, 2012-04-19 02:52
3
6,436 by rmoretti
Mon, 2014-04-21 06:47
Normal topic An error with score app
by Genta » Tue, 2019-10-29 18:46
0
1,049 by Genta
Tue, 2019-10-29 18:46
Normal topic ambiguous constraints
by shrutikhare » Mon, 2014-05-12 04:42
1
3,002 by rmoretti
Mon, 2014-05-12 08:25
Normal topic Altering substrate specificity
by bp » Thu, 2016-12-22 02:45
2
2,212 by bp
Thu, 2016-12-22 07:54
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
2,680 by rmoretti
Thu, 2017-08-24 11:00
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
0
1,173 by yigallah
Mon, 2014-12-15 08:46
Normal topic Alanine Scanning for 1 Protein (no interface)
by mags33 » Fri, 2019-10-25 10:08
2
1,809 by mags33
Wed, 2019-11-06 09:35
Normal topic Alanine Scanning
by gjbartlett » Mon, 2013-08-05 07:02
1
3,242 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Adding water interactions when docking a ligand with Rosetta 3.7.
by brspurri » Thu, 2017-06-01 09:37
2
2,837 by brspurri
Thu, 2017-06-01 10:58
Normal topic Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo
by zharmad » Fri, 2019-08-23 01:16
1
1,047 by everyday847
Fri, 2019-08-23 04:08
Normal topic Adding bridged water interaction in constraint file
by purvi24 » Thu, 2019-02-28 07:01
8
4,081 by purvi24
Mon, 2019-03-11 06:43
Normal topic Adding 'virtual' residues for N- and C-terminal optimisation
by Derek Smith » Thu, 2014-08-14 23:18
1
2,018 by jadolfbr
Fri, 2014-10-31 09:00
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