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Rosetta 3 - Applications
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core.optimization.LineMinimizer: [ ERROR ] Inaccurate G! by aralz » Thu, 2021-02-11 00:46 |
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741 |
by aralz Thu, 2021-02-11 00:46 |
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conway2016 correction on beta-nov15? by attesor » Wed, 2017-03-15 05:26 |
5 |
3,847 |
by attesor Thu, 2017-03-16 01:21 |
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Converting -patch replonly residues to original sequence by subha » Mon, 2017-06-26 13:39 |
8 |
5,281 |
by smlewis Tue, 2017-07-04 15:42 |
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contents of span file by tevang » Mon, 2013-04-15 05:01 |
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2,352 |
by smlewis Mon, 2014-04-21 06:47 |
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Constraints in RosettaCM by kbuhr » Fri, 2015-07-31 06:55 |
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3,773 |
by kbuhr Mon, 2016-03-28 01:08 |
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constraints in Rosetta ligand docking (AddorRemoveMatchCsts, Addconstraints Mover, and ConstraintSetMover) by rohi » Mon, 2021-01-11 13:32 |
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806 |
by rohi Mon, 2021-01-11 13:58 |
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Constraint generator by Alison_Yajie » Wed, 2020-06-17 20:14 |
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961 |
by Alison_Yajie Wed, 2020-06-17 20:35 |
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constraining different chains together in rosetta_cm by y_atsmonraz » Thu, 2021-11-18 02:59 |
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629 |
by y_atsmonraz Thu, 2021-11-18 03:01 |
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connecting rna strands together by y_atsmonraz » Tue, 2021-11-09 05:42 |
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707 |
by y_atsmonraz Thu, 2021-11-11 04:51 |
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Connecting linkers by Prasanth Kumar » Tue, 2014-05-06 00:53 |
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2,858 |
by smlewis Mon, 2014-05-12 08:32 |
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Conformers in EnzDes by JorickF » Fri, 2015-03-06 04:41 |
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6,579 |
by rmoretti Tue, 2015-03-31 08:56 |
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conformational sampling of multi domain protein by dhirajks » Tue, 2017-07-04 11:20 |
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3,252 |
by jrporter Wed, 2017-07-05 06:30 |
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Compiling Rosetta 3.3 on Linux Mint by proteinproteindock » Thu, 2011-09-01 16:05 |
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3,395 |
by proteinproteindock Mon, 2014-04-21 06:47 |
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Comparing a prediction to the native structure and calculate RMSD for RNA by danwolf_33 » Thu, 2023-02-09 09:32 |
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1,559 |
by danwolf_33 Thu, 2023-02-09 09:34 |
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comparative modelling of a complex by sdh_h » Sun, 2017-12-17 06:07 |
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916 |
by sdh_h Sun, 2017-12-17 06:07 |
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comparative modelling and broker by felipet » Tue, 2013-02-05 08:33 |
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3,893 |
by smlewis Mon, 2014-04-21 06:47 |
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Comparative modeling using a two chained template for a one chain structure by ahmadkhalifa » Mon, 2017-12-18 11:00 |
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1,368 |
by rmoretti Mon, 2018-01-15 16:14 |
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Comparative Modeling Tutorial by code_Monkey » Thu, 2021-03-04 12:35 |
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791 |
by rmoretti Fri, 2021-03-05 09:35 |
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Comparative Modeling Templates for Protein with Multiple Domains by Morrian_Lynn » Wed, 2020-03-04 10:42 |
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717 |
by Morrian_Lynn Wed, 2020-03-04 10:42 |
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Comparative modeling stops with "no more batches to process... " / no output by eskici » Tue, 2012-08-28 12:13 |
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5,761 |
by eskici Mon, 2014-04-21 06:47 |
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comparative modeling of protein-ligand complex by tevang » Mon, 2013-09-09 09:06 |
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3,996 |
by rmoretti Mon, 2014-04-21 06:48 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
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1,668 |
by ctqwong Mon, 2020-07-27 01:48 |
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comparative modeling of a homodimer by banshee » Mon, 2017-01-09 18:34 |
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2,131 |
by rmoretti Wed, 2017-01-11 13:00 |
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Comparative modeling by MRH » Mon, 2013-08-19 23:08 |
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2,272 |
by smlewis Mon, 2014-04-21 06:48 |
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Collecting all decoys from batch files by aep » Sun, 2016-08-07 12:23 |
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2,204 |
by aep Sat, 2016-08-13 13:03 |
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Coding denovo prediction from density maps in PyRosetta by ahmadkhalifa » Tue, 2018-04-10 11:43 |
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1,360 |
by rmoretti Tue, 2018-04-10 15:29 |
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cm_scripts by sn » Wed, 2018-02-14 11:00 |
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1,468 |
by rmoretti Wed, 2018-02-21 15:21 |
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clustering output file has few structures by fabiotrovato » Mon, 2020-08-17 11:37 |
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602 |
by fabiotrovato Mon, 2020-08-17 11:37 |
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Clustering issue by Loki01 » Thu, 2018-03-29 10:16 |
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2,859 |
by Loki01 Thu, 2018-04-12 08:28 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
3 |
3,674 |
by rmoretti Mon, 2014-05-12 08:45 |
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clustering by ays » Tue, 2014-09-30 08:26 |
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3,000 |
by rmoretti Mon, 2014-10-06 16:00 |
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cluster.mpi.linuxgccrelease failed by fred » Mon, 2014-02-24 12:11 |
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7,615 |
by fred Thu, 2014-03-27 11:29 |
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cluster.mpi running in MPI mode? by sacch » Fri, 2011-11-18 23:30 |
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4,122 |
by sacch Mon, 2014-04-21 06:47 |
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cluster.linuxgccrelease Killed error by samuelrpita » Fri, 2015-11-20 05:56 |
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2,131 |
by rmoretti Tue, 2015-11-24 16:07 |
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cluster,how to get the statistic data by MajorID » Wed, 2011-06-08 09:20 |
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1,801 |
by MajorID Mon, 2014-04-21 06:47 |
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cluster error by sudhar » Fri, 2011-06-17 05:58 |
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2,699 |
by rmoretti Mon, 2014-04-21 06:47 |
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clean_pdb.py of Rosetta VS cleanATOM of PyRosetta by lanselibai » Wed, 2014-09-24 03:02 |
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4,654 |
by lanselibai Wed, 2014-09-24 13:21 |
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clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
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1,974 |
by rmoretti Tue, 2020-07-28 08:24 |
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clashes created with enzdes by listofdina » Mon, 2021-08-02 06:51 |
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573 |
by listofdina Mon, 2021-08-02 06:51 |
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Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
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1,842 |
by johnnytam100 Tue, 2019-05-21 22:33 |
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Chemically bound ligand connection error by tsztain » Tue, 2019-01-01 18:40 |
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1,935 |
by tsztain Mon, 2019-02-18 09:55 |
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Checkpoint with rosetta3.4 by AmelieH » Mon, 2014-12-01 15:51 |
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2,346 |
by rmoretti Wed, 2014-12-03 19:07 |
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charge grid in rosetta ligand docking using rosetta script by syntekabio2019 » Mon, 2022-01-17 23:53 |
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724 |
by syntekabio2019 Mon, 2022-01-17 23:53 |
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Changing scoring function for fixbb protocol by mdyini » Sat, 2012-07-07 18:43 |
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3,821 |
by mdyini Mon, 2014-04-21 06:47 |
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Changing rosetta scoring to favour less hydrophobic areas by daniloboskovic » Thu, 2020-05-21 03:03 |
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960 |
by vmulligan Thu, 2020-05-21 18:33 |
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change number of output pose files written out (default=50) in ligand docking XML script by hdelrisco » Fri, 2019-10-18 13:50 |
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1,483 |
by hdelrisco Fri, 2019-10-18 17:16 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
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1,610 |
by Martin Floor Tue, 2020-01-21 11:15 |
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CC (or similar) calculation for cryoEM fitting by almeida85 » Tue, 2023-05-16 01:32 |
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90 |
by almeida85 Tue, 2023-05-23 08:23 |
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cartfrag_overlap error while running hybridize protocol by sn » Thu, 2017-12-21 10:24 |
2 |
1,911 |
by dnamkr Mon, 2019-12-30 11:43 |
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cartesian_ddg output by cossio » Thu, 2018-10-11 14:58 |
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2,883 |
by cossio Fri, 2018-10-12 04:43 |
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cartesian_ddg error: "Assertion `files.size() == 1` failed." by cossio » Fri, 2018-05-11 09:59 |
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2,735 |
by cossio Fri, 2018-05-18 09:51 |
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cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues by ValentinaSora » Sun, 2020-05-24 12:32 |
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1,030 |
by ValentinaSora Sun, 2020-05-24 12:32 |
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CartesianRefiner compilation problem by DmitriiN » Tue, 2015-12-15 08:52 |
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1,817 |
by rmoretti Tue, 2015-12-15 09:48 |
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Cartesian-space refinement by sjyang7 » Wed, 2017-05-31 19:34 |
5 |
4,920 |
by sjyang7 Sat, 2017-06-03 06:09 |
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Cannot get a negative score after relax by kxiao » Tue, 2014-01-28 22:28 |
6 |
7,244 |
by rmoretti Mon, 2014-04-21 06:48 |
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Can't generate a cst file to use with ddg_monomer application by ctqwong » Sat, 2021-03-13 03:53 |
6 |
2,207 |
by ctqwong Thu, 2021-03-18 02:04 |
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Can't find RosettaRemodel in Rosetta 3.4 by petrikigor » Mon, 2012-12-03 13:56 |
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1,634 |
by petrikigor Mon, 2014-04-21 06:47 |
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Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
3 |
3,506 |
by dswhit Tue, 2015-04-21 10:14 |
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Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans? by ccottrell » Tue, 2020-05-05 20:30 |
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2,340 |
by jadolfbr Wed, 2020-05-06 11:37 |
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Can rosetta generate a centroid model based on the rna sequence? by yels » Fri, 2021-03-26 04:06 |
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2,277 |
by yels Wed, 2021-03-31 18:31 |
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Can remodel really handle multiple insertions in one simulation? by lanselibai » Sat, 2019-12-28 12:51 |
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714 |
by lanselibai Sat, 2019-12-28 12:51 |
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can remodel add loops in one chain in multichain PDB structure? by ksteczk » Fri, 2020-05-01 06:26 |
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1,154 |
by matteoferla Mon, 2020-05-04 01:43 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
3 |
3,596 |
by smlewis Mon, 2014-04-21 06:47 |
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Can I use rosetta binaries built in one linux system to another linux system? by Danielsebas » Wed, 2019-09-18 06:49 |
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1,203 |
by rmoretti Wed, 2019-09-18 10:36 |
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Can I change high-resolution filter in SymDock by attesor » Fri, 2015-10-23 07:35 |
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2,428 |
by attesor Mon, 2015-10-26 09:01 |
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Can I believe the antibody design result? by Sunyp_IM » Mon, 2020-11-30 03:29 |
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2,446 |
by jadolfbr Sun, 2020-12-06 17:41 |
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Can I assume the outputs from different runs are from a same batch? by lanselibai » Mon, 2014-11-03 06:34 |
4 |
4,241 |
by lanselibai Mon, 2014-11-03 13:15 |
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can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
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1,410 |
by xinmiaohe Mon, 2019-08-26 18:16 |
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Can anybody suggests some flags to run Rifdock? by Hyunmi Song » Sun, 2022-01-23 16:45 |
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865 |
by Hyunmi Song Sun, 2022-01-23 16:45 |
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Camelid antibody (VHH) modelling by Ayoub Ksouri » Tue, 2017-04-04 22:52 |
13 |
9,229 |
by Ayoub Ksouri Wed, 2017-04-19 15:16 |
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Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
2 |
2,702 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
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Calbur vs Energy Based Clustering by Swillard » Sun, 2018-07-01 13:24 |
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1,620 |
by rmoretti Fri, 2018-08-03 08:26 |
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C-termini remodelling of dimeric structure removes second chain by LeonhardJS » Wed, 2021-10-13 06:23 |
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806 |
by LeonhardJS Fri, 2021-11-12 01:20 |
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BuildPeptide - Using Phosphorylated and Sulfated Tyrosine by jlawrie » Thu, 2020-09-03 14:29 |
1 |
1,104 |
by cryosky Mon, 2021-03-01 21:37 |
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Building loop extensions in a membrane protein with Remodel by benhardy » Tue, 2020-06-02 08:21 |
2 |
1,724 |
by benhardy Sun, 2020-09-20 11:15 |
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building a protein-dna homology model via cm_rosetta by y_atsmonraz » Wed, 2021-10-20 23:11 |
4 |
1,378 |
by y_atsmonraz Tue, 2021-11-02 01:47 |
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BUG REPORT: Remodel Resfile ERROR: LEU was added more than once? by daniloboskovic » Wed, 2020-04-29 01:17 |
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1,440 |
by daniloboskovic Wed, 2020-04-29 05:51 |
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Bug Report - Encoding issue by daniloboskovic » Tue, 2020-08-04 07:02 |
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576 |
by daniloboskovic Tue, 2020-08-04 07:02 |
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broker domain insertion by dhirajks » Sun, 2018-05-06 12:55 |
1 |
1,362 |
by rmoretti Fri, 2018-05-18 12:28 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:30 |
1 |
868 |
by taylorjones Wed, 2021-06-09 16:38 |
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blast database error by jessye » Sun, 2017-12-03 23:59 |
1 |
1,612 |
by smlewis Mon, 2017-12-04 12:18 |
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Binding energy contribution broken down by residue by brspurri » Tue, 2013-07-23 12:47 |
1 |
2,605 |
by rmoretti Mon, 2014-04-21 06:48 |
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Benchmarking Rosetta DDG Methods by sareeves96 » Fri, 2022-07-29 09:55 |
0 |
510 |
by sareeves96 Fri, 2022-07-29 09:55 |
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behind threading protocol by fred » Tue, 2011-10-25 05:37 |
0 |
2,042 |
by fred Mon, 2014-04-21 06:47 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
3 |
2,619 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
4 |
4,728 |
by protos_heis Mon, 2014-04-21 06:47 |
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backrub application, resfile, and pivot_residues by tylerborrman » Tue, 2016-12-06 14:46 |
0 |
1,079 |
by tylerborrman Tue, 2016-12-06 14:46 |
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auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
3 |
3,765 |
by beowulfey Tue, 2015-06-23 16:10 |
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autoNOE peak lists by aep » Thu, 2015-08-06 06:15 |
1 |
1,982 |
by sgourn Tue, 2015-08-18 18:25 |
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assymetric dymer modelling with comparative and ab initio by marcia » Mon, 2013-10-14 08:33 |
3 |
4,506 |
by rmoretti Mon, 2014-04-21 06:48 |
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ArchiveManager -- spinning down by Marius1987 » Fri, 2016-12-23 03:10 |
1 |
1,613 |
by smlewis Fri, 2016-12-23 07:04 |
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appropriate sampling for protein docking to a multi chain assembly by SWM » Fri, 2020-01-24 11:22 |
0 |
663 |
by SWM Fri, 2020-01-24 11:22 |
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application for affinity optimization by wentlewi » Fri, 2020-03-13 03:24 |
0 |
812 |
by wentlewi Fri, 2020-03-13 03:24 |
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Any progress on getting intermediate structures during a design? by broomsday » Mon, 2020-03-16 06:46 |
2 |
1,512 |
by vmulligan Tue, 2020-03-17 11:35 |
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Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
4 |
2,949 |
by johnnytam100 Sun, 2019-03-03 23:42 |
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antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
4 |
2,405 |
by jadolfbr Sun, 2020-03-01 14:54 |
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antibody.mpi.linuxgccrelease some antibodies failing to model by drewaight » Mon, 2020-11-02 17:07 |
0 |
928 |
by drewaight Mon, 2020-11-02 17:07 |
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antibody.linuxgccrelease- output models don't have the same sequence as the input fasta by agctomer » Thu, 2021-01-21 15:35 |
4 |
1,681 |
by agctomer Sun, 2021-01-31 01:06 |
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Antibody protocol: unusual antibodies, and chainbreaks by Cyril Cros » Mon, 2014-07-21 17:03 |
5 |
5,522 |
by Cyril Cros Tue, 2014-11-25 08:21 |
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antibody protocol fails by hamedkhakzad » Mon, 2019-08-19 07:43 |
1 |
1,189 |
by smlewis Tue, 2019-10-22 09:45 |
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