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Rosetta 3 - Applications

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Normal topic core.optimization.LineMinimizer: [ ERROR ] Inaccurate G!
by aralz » Thu, 2021-02-11 00:46
0
741 by aralz
Thu, 2021-02-11 00:46
Normal topic conway2016 correction on beta-nov15?
by attesor » Wed, 2017-03-15 05:26
5
3,847 by attesor
Thu, 2017-03-16 01:21
Normal topic Converting -patch replonly residues to original sequence
by subha » Mon, 2017-06-26 13:39
8
5,281 by smlewis
Tue, 2017-07-04 15:42
Normal topic contents of span file
by tevang » Mon, 2013-04-15 05:01
1
2,352 by smlewis
Mon, 2014-04-21 06:47
Normal topic Constraints in RosettaCM
by kbuhr » Fri, 2015-07-31 06:55
3
3,773 by kbuhr
Mon, 2016-03-28 01:08
Normal topic constraints in Rosetta ligand docking (AddorRemoveMatchCsts, Addconstraints Mover, and ConstraintSetMover)
by rohi » Mon, 2021-01-11 13:32
0
806 by rohi
Mon, 2021-01-11 13:58
Normal topic Constraint generator
by Alison_Yajie » Wed, 2020-06-17 20:14
1
961 by Alison_Yajie
Wed, 2020-06-17 20:35
Normal topic constraining different chains together in rosetta_cm
by y_atsmonraz » Thu, 2021-11-18 02:59
0
629 by y_atsmonraz
Thu, 2021-11-18 03:01
Normal topic connecting rna strands together
by y_atsmonraz » Tue, 2021-11-09 05:42
1
707 by y_atsmonraz
Thu, 2021-11-11 04:51
Normal topic Connecting linkers
by Prasanth Kumar » Tue, 2014-05-06 00:53
1
2,858 by smlewis
Mon, 2014-05-12 08:32
Normal topic Conformers in EnzDes
by JorickF » Fri, 2015-03-06 04:41
5
6,579 by rmoretti
Tue, 2015-03-31 08:56
Normal topic conformational sampling of multi domain protein
by dhirajks » Tue, 2017-07-04 11:20
4
3,252 by jrporter
Wed, 2017-07-05 06:30
Normal topic Compiling Rosetta 3.3 on Linux Mint
by proteinproteindock » Thu, 2011-09-01 16:05
2
3,395 by proteinproteindock
Mon, 2014-04-21 06:47
Normal topic Comparing a prediction to the native structure and calculate RMSD for RNA
by danwolf_33 » Thu, 2023-02-09 09:32
0
1,559 by danwolf_33
Thu, 2023-02-09 09:34
Normal topic comparative modelling of a complex
by sdh_h » Sun, 2017-12-17 06:07
0
916 by sdh_h
Sun, 2017-12-17 06:07
Normal topic comparative modelling and broker
by felipet » Tue, 2013-02-05 08:33
4
3,893 by smlewis
Mon, 2014-04-21 06:47
Normal topic Comparative modeling using a two chained template for a one chain structure
by ahmadkhalifa » Mon, 2017-12-18 11:00
1
1,368 by rmoretti
Mon, 2018-01-15 16:14
Normal topic Comparative Modeling Tutorial
by code_Monkey » Thu, 2021-03-04 12:35
1
791 by rmoretti
Fri, 2021-03-05 09:35
Normal topic Comparative Modeling Templates for Protein with Multiple Domains
by Morrian_Lynn » Wed, 2020-03-04 10:42
0
717 by Morrian_Lynn
Wed, 2020-03-04 10:42
Normal topic Comparative modeling stops with "no more batches to process... " / no output
by eskici » Tue, 2012-08-28 12:13
6
5,761 by eskici
Mon, 2014-04-21 06:47
Normal topic comparative modeling of protein-ligand complex
by tevang » Mon, 2013-09-09 09:06
3
3,996 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Comparative modeling of metalloproteins
by ctqwong » Sun, 2020-07-12 13:51
3
1,668 by ctqwong
Mon, 2020-07-27 01:48
Normal topic comparative modeling of a homodimer
by banshee » Mon, 2017-01-09 18:34
1
2,131 by rmoretti
Wed, 2017-01-11 13:00
Normal topic Comparative modeling
by MRH » Mon, 2013-08-19 23:08
1
2,272 by smlewis
Mon, 2014-04-21 06:48
Normal topic Collecting all decoys from batch files
by aep » Sun, 2016-08-07 12:23
2
2,204 by aep
Sat, 2016-08-13 13:03
Normal topic Coding denovo prediction from density maps in PyRosetta
by ahmadkhalifa » Tue, 2018-04-10 11:43
1
1,360 by rmoretti
Tue, 2018-04-10 15:29
Normal topic cm_scripts
by sn » Wed, 2018-02-14 11:00
1
1,468 by rmoretti
Wed, 2018-02-21 15:21
Normal topic clustering output file has few structures
by fabiotrovato » Mon, 2020-08-17 11:37
0
602 by fabiotrovato
Mon, 2020-08-17 11:37
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
2,859 by Loki01
Thu, 2018-04-12 08:28
Normal topic clustering in RosettaRemodel
by cheyuk » Wed, 2014-04-23 03:09
3
3,674 by rmoretti
Mon, 2014-05-12 08:45
Normal topic clustering
by ays » Tue, 2014-09-30 08:26
2
3,000 by rmoretti
Mon, 2014-10-06 16:00
Normal topic cluster.mpi.linuxgccrelease failed
by fred » Mon, 2014-02-24 12:11
3
7,615 by fred
Thu, 2014-03-27 11:29
Normal topic cluster.mpi running in MPI mode?
by sacch » Fri, 2011-11-18 23:30
2
4,122 by sacch
Mon, 2014-04-21 06:47
Normal topic cluster.linuxgccrelease Killed error
by samuelrpita » Fri, 2015-11-20 05:56
1
2,131 by rmoretti
Tue, 2015-11-24 16:07
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
0
1,801 by MajorID
Mon, 2014-04-21 06:47
Normal topic cluster error
by sudhar » Fri, 2011-06-17 05:58
1
2,699 by rmoretti
Mon, 2014-04-21 06:47
Normal topic clean_pdb.py of Rosetta VS cleanATOM of PyRosetta
by lanselibai » Wed, 2014-09-24 03:02
2
4,654 by lanselibai
Wed, 2014-09-24 13:21
Normal topic clean_pdb not working
by Andre Serobian » Thu, 2020-07-23 04:48
3
1,974 by rmoretti
Tue, 2020-07-28 08:24
Normal topic clashes created with enzdes
by listofdina » Mon, 2021-08-02 06:51
0
573 by listofdina
Mon, 2021-08-02 06:51
Normal topic Choosing weight file for interface design?
by johnnytam100 » Tue, 2019-05-07 00:47
2
1,842 by johnnytam100
Tue, 2019-05-21 22:33
Normal topic Chemically bound ligand connection error
by tsztain » Tue, 2019-01-01 18:40
2
1,935 by tsztain
Mon, 2019-02-18 09:55
Normal topic Checkpoint with rosetta3.4
by AmelieH » Mon, 2014-12-01 15:51
1
2,346 by rmoretti
Wed, 2014-12-03 19:07
Normal topic charge grid in rosetta ligand docking using rosetta script
by syntekabio2019 » Mon, 2022-01-17 23:53
0
724 by syntekabio2019
Mon, 2022-01-17 23:53
Normal topic Changing scoring function for fixbb protocol
by mdyini » Sat, 2012-07-07 18:43
4
3,821 by mdyini
Mon, 2014-04-21 06:47
Normal topic Changing rosetta scoring to favour less hydrophobic areas
by daniloboskovic » Thu, 2020-05-21 03:03
1
960 by vmulligan
Thu, 2020-05-21 18:33
Normal topic change number of output pose files written out (default=50) in ligand docking XML script
by hdelrisco » Fri, 2019-10-18 13:50
2
1,483 by hdelrisco
Fri, 2019-10-18 17:16
Normal topic Centroid mode minimization
by Martin Floor » Tue, 2020-01-21 07:34
2
1,610 by Martin Floor
Tue, 2020-01-21 11:15
Normal topic CC (or similar) calculation for cryoEM fitting
by almeida85 » Tue, 2023-05-16 01:32
2
90 by almeida85
Tue, 2023-05-23 08:23
Normal topic cartfrag_overlap error while running hybridize protocol
by sn » Thu, 2017-12-21 10:24
2
1,911 by dnamkr
Mon, 2019-12-30 11:43
Normal topic cartesian_ddg output
by cossio » Thu, 2018-10-11 14:58
2
2,883 by cossio
Fri, 2018-10-12 04:43
Normal topic cartesian_ddg error: "Assertion `files.size() == 1` failed."
by cossio » Fri, 2018-05-11 09:59
2
2,735 by cossio
Fri, 2018-05-18 09:51
Normal topic cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues
by ValentinaSora » Sun, 2020-05-24 12:32
0
1,030 by ValentinaSora
Sun, 2020-05-24 12:32
Normal topic CartesianRefiner compilation problem
by DmitriiN » Tue, 2015-12-15 08:52
1
1,817 by rmoretti
Tue, 2015-12-15 09:48
Normal topic Cartesian-space refinement
by sjyang7 » Wed, 2017-05-31 19:34
5
4,920 by sjyang7
Sat, 2017-06-03 06:09
Normal topic Cannot get a negative score after relax
by kxiao » Tue, 2014-01-28 22:28
6
7,244 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Can't generate a cst file to use with ddg_monomer application
by ctqwong » Sat, 2021-03-13 03:53
6
2,207 by ctqwong
Thu, 2021-03-18 02:04
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56
0
1,634 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Can't append or prepend with pepspec
by danzinho » Tue, 2015-03-31 01:19
3
3,506 by dswhit
Tue, 2015-04-21 10:14
Normal topic Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans?
by ccottrell » Tue, 2020-05-05 20:30
5
2,340 by jadolfbr
Wed, 2020-05-06 11:37
Normal topic Can rosetta generate a centroid model based on the rna sequence?
by yels » Fri, 2021-03-26 04:06
7
2,277 by yels
Wed, 2021-03-31 18:31
Normal topic Can remodel really handle multiple insertions in one simulation?
by lanselibai » Sat, 2019-12-28 12:51
0
714 by lanselibai
Sat, 2019-12-28 12:51
Normal topic can remodel add loops in one chain in multichain PDB structure?
by ksteczk » Fri, 2020-05-01 06:26
1
1,154 by matteoferla
Mon, 2020-05-04 01:43
Normal topic Can only relax one structure at a time
by lah435 » Wed, 2012-12-12 01:55
3
3,596 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can I use rosetta binaries built in one linux system to another linux system?
by Danielsebas » Wed, 2019-09-18 06:49
1
1,203 by rmoretti
Wed, 2019-09-18 10:36
Normal topic Can I change high-resolution filter in SymDock
by attesor » Fri, 2015-10-23 07:35
2
2,428 by attesor
Mon, 2015-10-26 09:01
Normal topic Can I believe the antibody design result?
by Sunyp_IM » Mon, 2020-11-30 03:29
6
2,446 by jadolfbr
Sun, 2020-12-06 17:41
Normal topic Can I assume the outputs from different runs are from a same batch?
by lanselibai » Mon, 2014-11-03 06:34
4
4,241 by lanselibai
Mon, 2014-11-03 13:15
Normal topic can anyone help me correct this script to do alanine scanning
by xinmiaohe » Mon, 2019-08-26 17:23
1
1,410 by xinmiaohe
Mon, 2019-08-26 18:16
Normal topic Can anybody suggests some flags to run Rifdock?
by Hyunmi Song » Sun, 2022-01-23 16:45
0
865 by Hyunmi Song
Sun, 2022-01-23 16:45
Normal topic Camelid antibody (VHH) modelling
by Ayoub Ksouri » Tue, 2017-04-04 22:52
13
9,229 by Ayoub Ksouri
Wed, 2017-04-19 15:16
Normal topic Calculate_protein_protein_ddg
by kamau » Fri, 2015-01-30 11:27
2
2,702 by deepanshuiitb
Thu, 2015-03-19 19:14
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
1
1,620 by rmoretti
Fri, 2018-08-03 08:26
Normal topic C-termini remodelling of dimeric structure removes second chain
by LeonhardJS » Wed, 2021-10-13 06:23
1
806 by LeonhardJS
Fri, 2021-11-12 01:20
Normal topic BuildPeptide - Using Phosphorylated and Sulfated Tyrosine
by jlawrie » Thu, 2020-09-03 14:29
1
1,104 by cryosky
Mon, 2021-03-01 21:37
Normal topic Building loop extensions in a membrane protein with Remodel
by benhardy » Tue, 2020-06-02 08:21
2
1,724 by benhardy
Sun, 2020-09-20 11:15
Normal topic building a protein-dna homology model via cm_rosetta
by y_atsmonraz » Wed, 2021-10-20 23:11
4
1,378 by y_atsmonraz
Tue, 2021-11-02 01:47
Normal topic BUG REPORT: Remodel Resfile ERROR: LEU was added more than once?
by daniloboskovic » Wed, 2020-04-29 01:17
2
1,440 by daniloboskovic
Wed, 2020-04-29 05:51
Normal topic Bug Report - Encoding issue
by daniloboskovic » Tue, 2020-08-04 07:02
0
576 by daniloboskovic
Tue, 2020-08-04 07:02
Normal topic broker domain insertion
by dhirajks » Sun, 2018-05-06 12:55
1
1,362 by rmoretti
Fri, 2018-05-18 12:28
Normal topic Blast error for rosetta antibody: No argument value given for Query file
by dngusdnr1 » Tue, 2021-06-08 17:30
1
868 by taylorjones
Wed, 2021-06-09 16:38
Normal topic blast database error
by jessye » Sun, 2017-12-03 23:59
1
1,612 by smlewis
Mon, 2017-12-04 12:18
Normal topic Binding energy contribution broken down by residue
by brspurri » Tue, 2013-07-23 12:47
1
2,605 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Benchmarking Rosetta DDG Methods
by sareeves96 » Fri, 2022-07-29 09:55
0
510 by sareeves96
Fri, 2022-07-29 09:55
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
0
2,042 by fred
Mon, 2014-04-21 06:47
Normal topic Behavior of nstruct
by johnnytam100 » Wed, 2019-05-15 22:22
3
2,619 by johnnytam100
Tue, 2019-05-21 20:48
Normal topic Backrub Params Files
by protos_heis » Tue, 2012-09-18 06:15
4
4,728 by protos_heis
Mon, 2014-04-21 06:47
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
0
1,079 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic auto_setup_metals flag with loop modeling application fails
by beowulfey » Wed, 2015-06-10 07:44
3
3,765 by beowulfey
Tue, 2015-06-23 16:10
Normal topic autoNOE peak lists
by aep » Thu, 2015-08-06 06:15
1
1,982 by sgourn
Tue, 2015-08-18 18:25
Normal topic assymetric dymer modelling with comparative and ab initio
by marcia » Mon, 2013-10-14 08:33
3
4,506 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ArchiveManager -- spinning down
by Marius1987 » Fri, 2016-12-23 03:10
1
1,613 by smlewis
Fri, 2016-12-23 07:04
Normal topic appropriate sampling for protein docking to a multi chain assembly
by SWM » Fri, 2020-01-24 11:22
0
663 by SWM
Fri, 2020-01-24 11:22
Normal topic application for affinity optimization
by wentlewi » Fri, 2020-03-13 03:24
0
812 by wentlewi
Fri, 2020-03-13 03:24
Normal topic Any progress on getting intermediate structures during a design?
by broomsday » Mon, 2020-03-16 06:46
2
1,512 by vmulligan
Tue, 2020-03-17 11:35
Normal topic Any backrub expert?
by johnnytam100 » Fri, 2019-03-01 01:58
4
2,949 by johnnytam100
Sun, 2019-03-03 23:42
Normal topic antibody_numbering_converter cannot recognize the IMGT scheme
by cryosky » Sat, 2020-02-29 23:12
4
2,405 by jadolfbr
Sun, 2020-03-01 14:54
Normal topic antibody.mpi.linuxgccrelease some antibodies failing to model
by drewaight » Mon, 2020-11-02 17:07
0
928 by drewaight
Mon, 2020-11-02 17:07
Normal topic antibody.linuxgccrelease- output models don't have the same sequence as the input fasta
by agctomer » Thu, 2021-01-21 15:35
4
1,681 by agctomer
Sun, 2021-01-31 01:06
Normal topic Antibody protocol: unusual antibodies, and chainbreaks
by Cyril Cros » Mon, 2014-07-21 17:03
5
5,522 by Cyril Cros
Tue, 2014-11-25 08:21
Normal topic antibody protocol fails
by hamedkhakzad » Mon, 2019-08-19 07:43
1
1,189 by smlewis
Tue, 2019-10-22 09:45
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