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Rosetta 3 - General
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fixbb minimize sidechains with symmetric pose - recompile? by Anonymous » Wed, 2012-08-22 06:14 |
13 |
7,597 |
by jadolfbr Mon, 2014-04-21 06:47 |
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ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query! by Anonymous » Sat, 2012-09-08 09:33 |
1 |
2,286 |
by Anonymous Mon, 2014-04-21 06:47 |
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spline constraint by jadolfbr » Mon, 2012-06-25 04:43 |
3 |
2,829 |
by smlewis Mon, 2014-04-21 06:47 |
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Error running design in 3.4 by inder » Thu, 2012-07-05 19:27 |
2 |
2,697 |
by inder Mon, 2014-04-21 06:47 |
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How to import SymmDock models into Rosetta for local docking and energy minimization by devroop » Fri, 2012-07-20 13:20 |
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2,509 |
by smlewis Mon, 2014-04-21 06:47 |
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RNA Denovo RMSD data by eremma » Thu, 2012-08-02 01:40 |
31 |
18,747 |
by eremma Mon, 2014-04-21 06:47 |
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The design of a helical peptide by Jacob-kong » Tue, 2012-06-26 06:26 |
6 |
6,230 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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unknown constraint function type: AtomPair ? by jiongzhang » Sun, 2012-07-15 02:13 |
4 |
3,170 |
by jiongzhang Mon, 2014-04-21 06:47 |
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How to insert a TER line between docking partners by devroop » Sun, 2012-07-29 13:48 |
1 |
2,519 |
by smlewis Mon, 2014-04-21 06:47 |
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postive score models from AbinitioRelax by xpzhang » Fri, 2012-06-22 12:34 |
4 |
2,940 |
by smlewis Mon, 2014-04-21 06:47 |
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How to site the scoring application in rosetta3.1? by doranhen » Thu, 2012-07-05 10:07 |
1 |
1,812 |
by smlewis Mon, 2014-04-21 06:47 |
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protein protein docking pipeline by dzhao » Thu, 2012-07-19 06:25 |
4 |
4,383 |
by smlewis Mon, 2014-04-21 06:47 |
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Scoring when the protein is a different length by gw » Wed, 2012-08-01 08:53 |
1 |
2,218 |
by smlewis Mon, 2014-04-21 06:47 |
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Discarding atoms for fixbb by Jacob-kong » Tue, 2012-06-26 06:23 |
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3,744 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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optH flag makes hydrogen bond energy scores worse... by tsjain » Fri, 2012-07-13 14:04 |
6 |
4,804 |
by smlewis Mon, 2014-04-21 06:47 |
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Flexible backbone design using PSSM by kalicuta » Thu, 2012-07-26 13:38 |
4 |
3,577 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to generate a symmetry definition file for octahedral symmetry? by Anonymous » Wed, 2012-08-15 05:20 |
0 |
1,924 |
by Anonymous Mon, 2014-04-21 06:47 |
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Does the energy score output by fixbb design have unit? by Lindsay » Mon, 2012-06-18 15:03 |
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2,259 |
by Lindsay Mon, 2014-04-21 06:47 |
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Need help with compilation (How to test if compilation is sucessful) by greenfur » Fri, 2012-06-29 12:29 |
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2,400 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop Modelling: ERROR: switch_to_residue_type_set fails by smiruthi » Wed, 2012-07-18 14:48 |
2 |
2,696 |
by smlewis Mon, 2014-04-21 06:47 |
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how to output a structure when scoring it? by tianbu » Tue, 2012-07-31 09:38 |
3 |
3,124 |
by rmoretti Mon, 2014-04-21 06:47 |
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prepack vs. relax with bb_cst by Anonymous » Mon, 2012-06-25 06:50 |
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1,905 |
by smlewis Mon, 2014-04-21 06:47 |
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Using mode=profile by Biokhar » Fri, 2012-07-06 00:29 |
2 |
2,393 |
by scombs Mon, 2014-04-21 06:47 |
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Scoring Electrostatics by aroop » Tue, 2012-08-07 11:41 |
5 |
3,899 |
by aroop Mon, 2014-04-21 06:47 |
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how to transfer the rosetta score to physical unit? by Lindsay » Thu, 2012-06-28 09:33 |
7 |
5,722 |
by Lindsay Mon, 2014-04-21 06:47 |
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Error when renumbering PDB by dzhao » Wed, 2012-07-18 01:03 |
7 |
6,895 |
by rmoretti Mon, 2014-04-21 06:47 |
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Error Atom_::dihedral_between_bonded_children by abiadak » Mon, 2012-07-30 06:34 |
2 |
2,939 |
by abiadak Mon, 2014-04-21 06:47 |
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force point mutation with fixbb by Anonymous » Wed, 2012-06-13 09:15 |
3 |
2,845 |
by smlewis Mon, 2014-04-21 06:47 |
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how to set the output name for fixbb design by Lindsay » Mon, 2012-04-30 09:32 |
1 |
1,545 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb program by Lindsay » Tue, 2012-05-08 13:56 |
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2,449 |
by AndrewLeaver-Fay Mon, 2014-04-21 06:47 |
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what is "-relax:sequence" ? by Anonymous » Fri, 2012-06-08 06:31 |
10 |
6,324 |
by smlewis Mon, 2014-04-21 06:47 |
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Comparative modelling of dimer by rt1108 » Fri, 2012-06-15 07:31 |
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2,137 |
by smlewis Mon, 2014-04-21 06:47 |
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Don't want to output the design structure by Lindsay » Wed, 2012-05-02 08:02 |
6 |
3,827 |
by Anonymous Mon, 2014-04-21 06:47 |
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Question regarding Mlipo score by DanielK » Tue, 2012-05-29 02:04 |
4 |
3,365 |
by smlewis Mon, 2014-04-21 06:47 |
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Biopython error in mac os x by vinodh » Tue, 2012-06-12 12:23 |
3 |
3,057 |
by jadolfbr Mon, 2014-04-21 06:47 |
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tyrosine structure error by dave » Mon, 2012-04-30 04:38 |
1 |
1,557 |
by frichter Mon, 2014-04-21 06:47 |
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Rosetta reference energy by Lindsay » Mon, 2012-05-07 07:56 |
9 |
6,762 |
by Lindsay Mon, 2014-04-21 06:47 |
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two questions about "Prepare structures for use in Rosetta" by Anonymous » Wed, 2012-06-06 08:13 |
6 |
4,264 |
by Anonymous Mon, 2014-04-21 06:47 |
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decoy vs pose by Anonymous » Fri, 2012-06-15 02:46 |
1 |
1,848 |
by smlewis Mon, 2014-04-21 06:47 |
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total energy score of the pdb structure by Lindsay » Tue, 2012-05-01 12:14 |
4 |
4,914 |
by Lindsay Mon, 2014-04-21 06:47 |
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Speeding up docking to a large complex by skovacs » Thu, 2012-05-10 20:50 |
30 |
19,796 |
by smlewis Mon, 2014-04-21 06:47 |
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about Residue Number in Rosetta by jiongzhang » Mon, 2012-06-11 14:58 |
7 |
7,892 |
by smlewis Mon, 2014-04-21 06:47 |
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symmetric docking application rosetta3.2: the docking_local_refine flag by doranhen » Sun, 2012-05-06 02:20 |
2 |
2,380 |
by doranhen Mon, 2014-04-21 06:47 |
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Questions about Monte Carlo Simulated Annealing algorithm in the design protocols by mdyini » Thu, 2012-05-31 12:39 |
3 |
4,353 |
by smlewis Mon, 2014-04-21 06:47 |
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Warning when running cluster program by Anonymous » Fri, 2012-06-15 02:39 |
14 |
7,898 |
by Anonymous Mon, 2014-04-21 06:47 |
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Fixed bb design with hydrogen bond constraint by bharat_46010 » Mon, 2012-04-30 22:56 |
6 |
4,234 |
by smlewis Mon, 2014-04-21 06:47 |
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hydrophobicity patch by Lindsay » Fri, 2012-05-04 08:24 |
7 |
6,456 |
by Lindsay Mon, 2014-04-21 06:47 |
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How to get multiple chains in PDB from Fold and Dock by arthuc01 » Tue, 2012-05-29 02:05 |
9 |
6,630 |
by arthuc01 Mon, 2014-04-21 06:47 |
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Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:19 |
2 |
2,934 |
by rmoretti Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
0 |
1,044 |
by DanielK Mon, 2014-04-21 06:47 |
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what option should I use if I want to use the dfire in 3.4 by Lindsay » Thu, 2012-04-12 05:19 |
3 |
2,662 |
by smlewis Mon, 2014-04-21 06:47 |
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Simple FoldTree Question by gipsonb » Wed, 2012-04-25 18:19 |
3 |
2,703 |
by gipsonb Mon, 2014-04-21 06:47 |
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double mutations scan by Lindsay » Fri, 2012-04-27 12:51 |
2 |
2,134 |
by Lindsay Mon, 2014-04-21 06:47 |
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how to optimize the weights? by Lindsay » Tue, 2012-04-10 07:40 |
7 |
4,338 |
by rmoretti Mon, 2014-04-21 06:47 |
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Possible documentation error by imurch » Tue, 2012-04-17 00:11 |
1 |
1,827 |
by Anonymous Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
0 |
1,174 |
by DanielK Mon, 2014-04-21 06:47 |
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Energy Calculation in Rosetta3.4 by sdg_lab » Thu, 2012-04-12 04:49 |
6 |
8,410 |
by rmoretti Mon, 2014-04-21 06:47 |
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Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3? by jiongzhang » Fri, 2012-04-20 13:35 |
2 |
2,099 |
by rmoretti Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
2 |
2,075 |
by DanielK Mon, 2014-04-21 06:47 |
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how to make benchmark? by albumns » Wed, 2012-04-04 05:23 |
23 |
20,418 |
by rmoretti Mon, 2014-04-21 06:47 |
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Symmetric Docking (Making Trimer from Monomerics Units) by sdg_lab » Thu, 2012-04-12 09:21 |
1 |
1,614 |
by rmoretti Mon, 2014-04-21 06:47 |
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Picking the correct model from a large set of decoys (30,000+) by brspurri » Thu, 2012-04-26 15:37 |
4 |
4,232 |
by rmoretti Mon, 2014-04-21 06:47 |
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The -symmetry:perturb_rigid_body_dofs flag by doranhen » Sat, 2012-04-28 13:01 |
2 |
1,951 |
by doranhen Mon, 2014-04-21 06:47 |
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symmetric Docking- TRIMER in Rosetta 3.4 ? by sdg_lab » Thu, 2012-04-12 04:22 |
1 |
2,810 |
by rmoretti Mon, 2014-04-21 06:47 |
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Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:20 |
1 |
2,724 |
by rmoretti Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
0 |
1,230 |
by DanielK Mon, 2014-04-21 06:47 |
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General Protein Folding Question by twopint23oz » Sun, 2012-04-01 22:57 |
7 |
4,543 |
by smlewis Mon, 2014-04-21 06:47 |
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Energy and RG in the new rosetta3.4 ( like RG_Energy.cc and RG_Energy_Fast.cc ) by sdg_lab » Thu, 2012-04-12 08:49 |
1 |
1,500 |
by smlewis Mon, 2014-04-21 06:47 |
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what's the difference between recovery and sequence identity by Lindsay » Thu, 2012-04-26 05:46 |
3 |
3,167 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem with clustering 1000 centroid pdbs by doranhen » Sat, 2012-04-28 10:34 |
6 |
5,001 |
by doranhen Mon, 2014-04-21 06:47 |
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what is minirosetta by Lindsay » Tue, 2012-04-10 07:48 |
2 |
8,462 |
by Lindsay Mon, 2014-04-21 06:47 |
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How to run docking in rosetta with small molecule by ajaniharesh » Tue, 2012-02-28 03:58 |
1 |
3,345 |
by smlewis Mon, 2014-04-21 06:47 |
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About RosettaScript examples by jiongzhang » Thu, 2012-03-08 10:50 |
1 |
1,690 |
by smlewis Mon, 2014-04-21 06:47 |
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how to use AbinitioRelax.mpi.linuxgccrelease? by albumns » Mon, 2012-03-26 22:50 |
5 |
5,010 |
by smlewis Mon, 2014-04-21 06:47 |
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python problem? by albumns » Fri, 2012-03-02 11:03 |
1 |
1,575 |
by albumns Mon, 2014-04-21 06:47 |
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Documentation missing in MultiGraft by aroop » Thu, 2012-03-15 07:39 |
2 |
2,159 |
by aroop Mon, 2014-04-21 06:47 |
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redesign a enzyme by fixing the active site by Lindsay » Wed, 2012-03-07 08:23 |
2 |
2,227 |
by Lindsay Mon, 2014-04-21 06:47 |
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Membrane folding - blastpgp error. by arthuc01 » Sun, 2012-03-25 14:47 |
4 |
4,325 |
by arthuc01 Mon, 2014-04-21 06:47 |
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a question about loop refinement by albumns » Fri, 2012-03-02 09:38 |
4 |
3,978 |
by albumns Mon, 2014-04-21 06:47 |
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AnchoredPDBcreator by spraha » Wed, 2012-03-14 23:34 |
3 |
2,330 |
by smlewis Mon, 2014-04-21 06:47 |
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Fix back bone design fixbb by Lindsay » Tue, 2012-03-06 12:30 |
26 |
15,665 |
by Anonymous Mon, 2014-04-21 06:47 |
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fixbb design use by Lindsay » Fri, 2012-03-23 09:05 |
2 |
2,026 |
by Lindsay Mon, 2014-04-21 06:47 |
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How to make Rosetta's sampling more aggresive ? by jiongzhang » Mon, 2012-03-12 11:04 |
1 |
1,627 |
by rmoretti Mon, 2014-04-21 06:47 |
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is it possible to generate models without hydrogen? by albumns » Fri, 2012-03-02 12:24 |
9 |
5,876 |
by albumns Mon, 2014-04-21 06:47 |
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Does comparative modeling works for membrane proteins by justin » Wed, 2012-03-21 04:58 |
1 |
1,674 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: filtered_alignments.size() > 0 by jhbrown » Tue, 2012-01-17 13:28 |
2 |
1,791 |
by jhbrown Mon, 2014-04-21 06:47 |
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Changing Monte Carlo temperature for relax by jruhym » Thu, 2012-02-02 15:18 |
1 |
1,885 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fragment file viewers by MajorID » Fri, 2012-02-24 20:57 |
2 |
1,993 |
by smlewis Mon, 2014-04-21 06:47 |
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using defined WATERS in PACKING by ast » Wed, 2012-01-11 09:11 |
4 |
3,006 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta3.3 enzyme_design errors by jtmacd » Wed, 2012-01-25 03:33 |
7 |
5,994 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaDesign Server, reproducing optimized interface conformation by AlexanderMetz » Thu, 2012-02-09 10:41 |
1 |
2,667 |
by smlewis Mon, 2014-04-21 06:47 |
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Comparing scores by renedominik » Mon, 2012-02-27 05:21 |
4 |
3,338 |
by renedominik Mon, 2014-04-21 06:47 |
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restricting space in a design by ast » Tue, 2012-01-17 06:31 |
2 |
1,903 |
by rmoretti Mon, 2014-04-21 06:47 |
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error during docking by zhisheng » Thu, 2012-02-02 12:10 |
10 |
6,707 |
by smlewis Mon, 2014-04-21 06:47 |
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How to install Rosetta in Redhat Linux ? by ajaniharesh » Fri, 2012-02-24 02:32 |
1 |
4,497 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax Refinement for complecated targets by jiongzhang » Fri, 2012-01-20 09:57 |
10 |
5,595 |
by jiongzhang Mon, 2014-04-21 06:47 |
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protein-protien docking with uniform trans by lkingsle » Thu, 2012-02-09 07:19 |
1 |
1,984 |
by mpacella Mon, 2014-04-21 06:47 |
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core.scoring.rms_util: WARNING: CA_rmsd out of range... by mdyini » Sat, 2012-02-25 16:14 |
4 |
3,172 |
by mdyini Mon, 2014-04-21 06:47 |
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Relax protocol details for Rosetta 3.1 by Matthys » Sun, 2012-01-15 10:00 |
4 |
3,154 |
by rmoretti Mon, 2014-04-21 06:47 |
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Docking double-stranded DNA to a protein by xpzhang » Tue, 2012-01-31 12:35 |
5 |
7,066 |
by xpzhang Mon, 2014-04-21 06:47 |
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