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Rosetta 3 - General
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Rosetta forcefield terms and interpretation by zigeuner » Sat, 2013-05-25 16:59 |
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4,142 |
by rmoretti Mon, 2014-04-21 06:47 |
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how to make a combined PDB file? by fenghc » Mon, 2013-04-01 06:27 |
3 |
13,738 |
by smlewis Mon, 2014-04-21 06:47 |
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side-chain refinement by qlj » Wed, 2013-02-20 04:40 |
6 |
7,321 |
by qlj Mon, 2014-04-21 06:47 |
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Re: Using a database of loop conformations together with de novo folding protocol (Page: 1, 2)
by bharat_46010 » Mon, 2013-03-25 01:47 |
55 |
45,146 |
by bharat_46010 Mon, 2014-04-21 06:47 |
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run:test_cycles by ramin » Sun, 2013-03-10 11:05 |
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1,691 |
by smlewis Mon, 2014-04-21 06:47 |
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cluster pdb structures questions by ritacc18 » Thu, 2013-03-28 19:20 |
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6,018 |
by ritacc18 Mon, 2014-04-21 06:47 |
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What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize? by brspurri » Tue, 2013-02-12 08:19 |
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6,043 |
by smlewis Mon, 2014-04-21 06:47 |
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is there a preferred way to enforce an hydrogen bond ? by logandonaldson » Wed, 2013-03-20 13:14 |
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2,232 |
by rmoretti Mon, 2014-04-21 06:47 |
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ddG average energy by dave » Wed, 2013-04-03 03:36 |
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2,035 |
by rmoretti Mon, 2014-04-21 06:47 |
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ab initio folding part of a protein by attesor » Wed, 2013-03-06 04:39 |
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1,822 |
by smlewis Mon, 2014-04-21 06:47 |
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kinematic loop modeling/sequence design keeps crashing with segmentation fault by banshee » Thu, 2013-03-28 09:52 |
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6,870 |
by smlewis Mon, 2014-04-21 06:47 |
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-loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease by tsjain » Tue, 2013-02-05 18:47 |
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3,129 |
by tsjain Mon, 2014-04-21 06:47 |
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create a centroid file from structure or NOE list by logandonaldson » Wed, 2013-03-20 12:23 |
3 |
4,341 |
by smlewis Mon, 2014-04-21 06:47 |
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Give diferent chain information for a single sequence (comparative modeling) by Martin Floor » Tue, 2013-04-02 08:59 |
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3,790 |
by Martin Floor Mon, 2014-04-21 06:47 |
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jd2 time out error by ytao » Mon, 2013-03-04 20:47 |
2 |
2,171 |
by ytao Mon, 2014-04-21 06:47 |
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Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles? by nh_prt » Tue, 2013-03-26 12:22 |
3 |
2,866 |
by smlewis Mon, 2014-04-21 06:47 |
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flexible backbone design (fixbb+relax) by sdh_h » Mon, 2013-02-04 03:19 |
9 |
9,667 |
by gsmurphy Mon, 2014-04-21 06:47 |
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multiple cst files by logandonaldson » Wed, 2013-03-20 12:16 |
4 |
3,551 |
by logandonaldson Mon, 2014-04-21 06:47 |
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Specifying sidechain NOE restraints in Relax! by kalabharath » Mon, 2012-12-10 16:44 |
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2,493 |
by kalabharath Mon, 2014-04-21 06:47 |
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Residue variant types and fragments by jadolfbr » Mon, 2013-01-21 09:01 |
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2,683 |
by jadolfbr Mon, 2014-04-21 06:47 |
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"Local sequence-structure compatability" in "design of ideal protein structures" by petrikigor » Sun, 2012-12-02 09:25 |
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2,523 |
by petrikigor Mon, 2014-04-21 06:47 |
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Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
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2,183 |
by coxford Mon, 2014-04-21 06:47 |
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Reading FE from 2PAH by jadolfbr » Tue, 2013-01-29 16:10 |
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5,353 |
by rmoretti Mon, 2014-04-21 06:47 |
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Constraints in Loop Modeling by Julix » Wed, 2012-12-05 07:08 |
11 |
8,675 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to use RotamerDump to access one and two-body energy tables? by msun » Wed, 2013-01-16 12:26 |
3 |
2,554 |
by msun Mon, 2014-04-21 06:47 |
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pNNMAKE compilation by adva » Sun, 2012-12-02 03:59 |
10 |
7,034 |
by smlewis Mon, 2014-04-21 06:47 |
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Can I use the relax mode application for removing clashes in a membrane protein homology model? by doranhen » Thu, 2012-12-20 05:45 |
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2,404 |
by doranhen Mon, 2014-04-21 06:47 |
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memory issue rosetta3.4 scripts by ast » Mon, 2013-01-28 06:25 |
8 |
8,154 |
by smlewis Mon, 2014-04-21 06:47 |
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Solving van der waals clashes in a transmembrane protein model with rosetta by doranhen » Wed, 2012-12-05 00:12 |
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3,063 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb and HETATM by doranhen » Mon, 2013-01-14 07:50 |
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2,907 |
by doranhen Mon, 2014-04-21 06:47 |
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How to put rdc data in refinement protocol? by zhisheng » Tue, 2012-11-20 03:55 |
13 |
9,458 |
by rmoretti Mon, 2014-04-21 06:47 |
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fragment_picker problem by adva » Tue, 2012-12-18 01:15 |
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10,405 |
by sabine Mon, 2014-04-21 06:47 |
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nr.fasta by silvia » Wed, 2013-01-23 10:08 |
5 |
9,251 |
by dgront Mon, 2014-04-21 06:47 |
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Rosetta repacking output by doranhen » Mon, 2012-12-03 03:44 |
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4,847 |
by doranhen Mon, 2014-04-21 06:47 |
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membrane ab initio error after montecarlo by adva » Mon, 2012-12-24 01:43 |
6 |
4,960 |
by tevang Mon, 2014-04-21 06:47 |
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Random seed confusion by pardave » Mon, 2012-11-12 09:45 |
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3,821 |
by pardave Mon, 2014-04-21 06:47 |
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Unknow atom_name: LYS 1HZ in enzdes after match by petrikigor » Fri, 2012-10-19 09:35 |
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2,883 |
by rmoretti Mon, 2014-04-21 06:47 |
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Homology Model gives output - but completely wrong! by Julix » Wed, 2012-10-31 10:10 |
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2,920 |
by rmoretti Mon, 2014-04-21 06:47 |
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Identical decoys by aroop » Tue, 2012-09-25 12:50 |
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3,809 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released! by xujc » Wed, 2012-10-24 11:15 |
0 |
3,821 |
by xujc Mon, 2014-04-21 06:47 |
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Question regarding buried or exposed residues by qlj » Fri, 2012-11-09 23:43 |
5 |
5,433 |
by qlj Mon, 2014-04-21 06:47 |
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Symmetric Processing for evaluating side-chain of chi angle by qlj » Wed, 2012-10-10 04:08 |
2 |
2,394 |
by smlewis Mon, 2014-04-21 06:47 |
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an old question by albumns » Sun, 2012-10-28 12:14 |
4 |
3,865 |
by rmoretti Mon, 2014-04-21 06:47 |
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Docking failure by khanhbinh » Sun, 2012-09-23 22:19 |
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2,466 |
by khanhbinh Mon, 2014-04-21 06:47 |
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match_dspos1 and other matcher options by petrikigor » Sat, 2012-10-20 09:22 |
5 |
4,433 |
by rmoretti Mon, 2014-04-21 06:47 |
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model protein at low pH by ytao » Mon, 2012-11-05 07:52 |
1 |
2,406 |
by smlewis Mon, 2014-04-21 06:47 |
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computer specifications by rlwoltz » Tue, 2012-10-09 16:11 |
4 |
4,843 |
by rlwoltz Mon, 2014-04-21 06:47 |
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mitochondria protein modeling by rlwoltz » Fri, 2012-10-26 14:32 |
6 |
5,653 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR - PDB's with occupancy field equal '1.0' by khanhbinh » Sun, 2012-09-23 09:38 |
1 |
1,899 |
by rmoretti Mon, 2014-04-21 06:47 |
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AtomTree::torsion_angle() can't find dof! in match and enzdes by petrikigor » Fri, 2012-10-19 09:49 |
1 |
2,074 |
by rmoretti Mon, 2014-04-21 06:47 |
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loop design by varma » Sun, 2012-11-04 21:25 |
2 |
3,152 |
by varma Mon, 2014-04-21 06:47 |
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ddG backbone movement by dave » Wed, 2012-10-03 03:23 |
2 |
2,494 |
by dave Mon, 2014-04-21 06:47 |
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Can't make NCAA's and D-aminoacids work by jarek » Fri, 2012-10-26 09:10 |
26 |
19,500 |
by rmoretti Mon, 2014-04-21 06:47 |
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AbinitioRelax with very small peptides by jamsmad » Tue, 2012-09-04 13:45 |
9 |
7,789 |
by jamsmad Mon, 2014-04-21 06:47 |
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header pathways not accessable: No such file or directory by rlwoltz » Tue, 2012-09-18 17:44 |
1 |
1,920 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb minimize sidechains with symmetric pose - recompile? by Anonymous » Wed, 2012-08-22 06:14 |
13 |
8,990 |
by jadolfbr Mon, 2014-04-21 06:47 |
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ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query! by Anonymous » Sat, 2012-09-08 09:33 |
1 |
2,576 |
by Anonymous Mon, 2014-04-21 06:47 |
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Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh by tsjain » Wed, 2012-08-15 12:20 |
3 |
2,570 |
by smlewis Mon, 2014-04-21 06:47 |
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How to remove clashes in peptide bonds and proline residue? by Anatol » Fri, 2012-08-31 09:26 |
2 |
2,537 |
by Anatol Mon, 2014-04-21 06:47 |
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Steps to use D-amino acids by tevang » Mon, 2012-09-10 15:42 |
15 |
13,358 |
by tevang Mon, 2014-04-21 06:47 |
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enzdes error by bo » Tue, 2012-08-21 09:12 |
4 |
3,528 |
by bo Mon, 2014-04-21 06:47 |
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Rosetta Dock with MPI / PBS by edpryor » Wed, 2012-09-05 11:04 |
3 |
5,543 |
by smlewis Mon, 2014-04-21 06:47 |
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Rotate MOVER by gw » Wed, 2012-08-15 12:09 |
5 |
4,386 |
by glemmon Mon, 2014-04-21 06:47 |
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Negative design: Can a filter call a mover in rosetta scripts? by jgans » Sat, 2012-09-08 21:28 |
2 |
2,975 |
by rmoretti Mon, 2014-04-21 06:47 |
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packstat in InterfaceAnalyzer by Anonymous » Mon, 2012-08-20 03:19 |
22 |
15,327 |
by Anonymous Mon, 2014-04-21 06:47 |
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Loop Modeling Deletes Residues by Julix » Wed, 2012-09-05 10:14 |
7 |
5,659 |
by smlewis Mon, 2014-04-21 06:47 |
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Copying angles (pose.set_phi()) from a substructure with the same sequence to pose doesn't produce the exact same substructure? by resiros » Wed, 2012-08-22 07:20 |
13 |
8,663 |
by smlewis Mon, 2014-04-21 06:47 |
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Does Rosetta have an app for detecting brakes and clashes in proteins by Anatol » Sat, 2012-09-08 15:48 |
3 |
3,660 |
by smlewis Mon, 2014-04-21 06:47 |
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rs filter for terms in .sc files by gw » Sat, 2012-08-18 16:20 |
4 |
3,884 |
by gw Mon, 2014-04-21 06:47 |
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prepack vs. relax with bb_cst by Anonymous » Mon, 2012-06-25 06:50 |
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2,160 |
by smlewis Mon, 2014-04-21 06:47 |
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Using mode=profile by Biokhar » Fri, 2012-07-06 00:29 |
2 |
2,724 |
by scombs Mon, 2014-04-21 06:47 |
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Scoring Electrostatics by aroop » Tue, 2012-08-07 11:41 |
5 |
4,513 |
by aroop Mon, 2014-04-21 06:47 |
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how to transfer the rosetta score to physical unit? by Lindsay » Thu, 2012-06-28 09:33 |
7 |
6,651 |
by Lindsay Mon, 2014-04-21 06:47 |
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Error when renumbering PDB by dzhao » Wed, 2012-07-18 01:03 |
7 |
7,886 |
by rmoretti Mon, 2014-04-21 06:47 |
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Error Atom_::dihedral_between_bonded_children by abiadak » Mon, 2012-07-30 06:34 |
2 |
3,289 |
by abiadak Mon, 2014-04-21 06:47 |
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spline constraint by jadolfbr » Mon, 2012-06-25 04:43 |
3 |
3,300 |
by smlewis Mon, 2014-04-21 06:47 |
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Error running design in 3.4 by inder » Thu, 2012-07-05 19:27 |
2 |
3,003 |
by inder Mon, 2014-04-21 06:47 |
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How to import SymmDock models into Rosetta for local docking and energy minimization by devroop » Fri, 2012-07-20 13:20 |
1 |
2,750 |
by smlewis Mon, 2014-04-21 06:47 |
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RNA Denovo RMSD data by eremma » Thu, 2012-08-02 01:40 |
31 |
22,107 |
by eremma Mon, 2014-04-21 06:47 |
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The design of a helical peptide by Jacob-kong » Tue, 2012-06-26 06:26 |
6 |
6,985 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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unknown constraint function type: AtomPair ? by jiongzhang » Sun, 2012-07-15 02:13 |
4 |
3,666 |
by jiongzhang Mon, 2014-04-21 06:47 |
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How to insert a TER line between docking partners by devroop » Sun, 2012-07-29 13:48 |
1 |
2,760 |
by smlewis Mon, 2014-04-21 06:47 |
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postive score models from AbinitioRelax by xpzhang » Fri, 2012-06-22 12:34 |
4 |
3,415 |
by smlewis Mon, 2014-04-21 06:47 |
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How to site the scoring application in rosetta3.1? by doranhen » Thu, 2012-07-05 10:07 |
1 |
2,034 |
by smlewis Mon, 2014-04-21 06:47 |
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protein protein docking pipeline by dzhao » Thu, 2012-07-19 06:25 |
4 |
4,939 |
by smlewis Mon, 2014-04-21 06:47 |
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Scoring when the protein is a different length by gw » Wed, 2012-08-01 08:53 |
1 |
2,450 |
by smlewis Mon, 2014-04-21 06:47 |
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Discarding atoms for fixbb by Jacob-kong » Tue, 2012-06-26 06:23 |
4 |
4,354 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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optH flag makes hydrogen bond energy scores worse... by tsjain » Fri, 2012-07-13 14:04 |
6 |
5,553 |
by smlewis Mon, 2014-04-21 06:47 |
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Flexible backbone design using PSSM by kalicuta » Thu, 2012-07-26 13:38 |
4 |
4,091 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to generate a symmetry definition file for octahedral symmetry? by Anonymous » Wed, 2012-08-15 05:20 |
0 |
2,105 |
by Anonymous Mon, 2014-04-21 06:47 |
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Does the energy score output by fixbb design have unit? by Lindsay » Mon, 2012-06-18 15:03 |
2 |
2,548 |
by Lindsay Mon, 2014-04-21 06:47 |
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Need help with compilation (How to test if compilation is sucessful) by greenfur » Fri, 2012-06-29 12:29 |
1 |
2,611 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop Modelling: ERROR: switch_to_residue_type_set fails by smiruthi » Wed, 2012-07-18 14:48 |
2 |
3,025 |
by smlewis Mon, 2014-04-21 06:47 |
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how to output a structure when scoring it? by tianbu » Tue, 2012-07-31 09:38 |
3 |
3,533 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fixed bb design with hydrogen bond constraint by bharat_46010 » Mon, 2012-04-30 22:56 |
6 |
4,931 |
by smlewis Mon, 2014-04-21 06:47 |
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hydrophobicity patch by Lindsay » Fri, 2012-05-04 08:24 |
7 |
7,465 |
by Lindsay Mon, 2014-04-21 06:47 |
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How to get multiple chains in PDB from Fold and Dock by arthuc01 » Tue, 2012-05-29 02:05 |
9 |
7,702 |
by arthuc01 Mon, 2014-04-21 06:47 |
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force point mutation with fixbb by Anonymous » Wed, 2012-06-13 09:15 |
3 |
3,279 |
by smlewis Mon, 2014-04-21 06:47 |
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how to set the output name for fixbb design by Lindsay » Mon, 2012-04-30 09:32 |
1 |
1,763 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb program by Lindsay » Tue, 2012-05-08 13:56 |
3 |
2,842 |
by AndrewLeaver-Fay Mon, 2014-04-21 06:47 |
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