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Rosetta 3 - General
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fixbb and HETATM by doranhen » Mon, 2013-01-14 07:50 |
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3,371 |
by doranhen Mon, 2014-04-21 06:47 |
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How to put rdc data in refinement protocol? by zhisheng » Tue, 2012-11-20 03:55 |
13 |
10,951 |
by rmoretti Mon, 2014-04-21 06:47 |
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fragment_picker problem by adva » Tue, 2012-12-18 01:15 |
13 |
11,855 |
by sabine Mon, 2014-04-21 06:47 |
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nr.fasta by silvia » Wed, 2013-01-23 10:08 |
5 |
10,150 |
by dgront Mon, 2014-04-21 06:47 |
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Rosetta repacking output by doranhen » Mon, 2012-12-03 03:44 |
5 |
5,591 |
by doranhen Mon, 2014-04-21 06:47 |
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membrane ab initio error after montecarlo by adva » Mon, 2012-12-24 01:43 |
6 |
5,707 |
by tevang Mon, 2014-04-21 06:47 |
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Specifying sidechain NOE restraints in Relax! by kalabharath » Mon, 2012-12-10 16:44 |
2 |
2,899 |
by kalabharath Mon, 2014-04-21 06:47 |
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Residue variant types and fragments by jadolfbr » Mon, 2013-01-21 09:01 |
2 |
3,082 |
by jadolfbr Mon, 2014-04-21 06:47 |
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"Local sequence-structure compatability" in "design of ideal protein structures" by petrikigor » Sun, 2012-12-02 09:25 |
2 |
2,934 |
by petrikigor Mon, 2014-04-21 06:47 |
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Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
0 |
2,445 |
by coxford Mon, 2014-04-21 06:47 |
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Reading FE from 2PAH by jadolfbr » Tue, 2013-01-29 16:10 |
5 |
6,033 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released! by xujc » Wed, 2012-10-24 11:15 |
0 |
4,072 |
by xujc Mon, 2014-04-21 06:47 |
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Question regarding buried or exposed residues by qlj » Fri, 2012-11-09 23:43 |
5 |
6,191 |
by qlj Mon, 2014-04-21 06:47 |
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Symmetric Processing for evaluating side-chain of chi angle by qlj » Wed, 2012-10-10 04:08 |
2 |
2,799 |
by smlewis Mon, 2014-04-21 06:47 |
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an old question by albumns » Sun, 2012-10-28 12:14 |
4 |
4,467 |
by rmoretti Mon, 2014-04-21 06:47 |
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Docking failure by khanhbinh » Sun, 2012-09-23 22:19 |
2 |
2,912 |
by khanhbinh Mon, 2014-04-21 06:47 |
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match_dspos1 and other matcher options by petrikigor » Sat, 2012-10-20 09:22 |
5 |
5,209 |
by rmoretti Mon, 2014-04-21 06:47 |
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model protein at low pH by ytao » Mon, 2012-11-05 07:52 |
1 |
2,759 |
by smlewis Mon, 2014-04-21 06:47 |
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computer specifications by rlwoltz » Tue, 2012-10-09 16:11 |
4 |
5,799 |
by rlwoltz Mon, 2014-04-21 06:47 |
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mitochondria protein modeling by rlwoltz » Fri, 2012-10-26 14:32 |
6 |
6,432 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR - PDB's with occupancy field equal '1.0' by khanhbinh » Sun, 2012-09-23 09:38 |
1 |
2,175 |
by rmoretti Mon, 2014-04-21 06:47 |
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AtomTree::torsion_angle() can't find dof! in match and enzdes by petrikigor » Fri, 2012-10-19 09:49 |
1 |
2,452 |
by rmoretti Mon, 2014-04-21 06:47 |
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loop design by varma » Sun, 2012-11-04 21:25 |
2 |
3,707 |
by varma Mon, 2014-04-21 06:47 |
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ddG backbone movement by dave » Wed, 2012-10-03 03:23 |
2 |
2,857 |
by dave Mon, 2014-04-21 06:47 |
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Can't make NCAA's and D-aminoacids work by jarek » Fri, 2012-10-26 09:10 |
26 |
22,710 |
by rmoretti Mon, 2014-04-21 06:47 |
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Random seed confusion by pardave » Mon, 2012-11-12 09:45 |
4 |
4,412 |
by pardave Mon, 2014-04-21 06:47 |
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Unknow atom_name: LYS 1HZ in enzdes after match by petrikigor » Fri, 2012-10-19 09:35 |
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3,194 |
by rmoretti Mon, 2014-04-21 06:47 |
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Homology Model gives output - but completely wrong! by Julix » Wed, 2012-10-31 10:10 |
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3,194 |
by rmoretti Mon, 2014-04-21 06:47 |
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Identical decoys by aroop » Tue, 2012-09-25 12:50 |
4 |
4,381 |
by smlewis Mon, 2014-04-21 06:47 |
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Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh by tsjain » Wed, 2012-08-15 12:20 |
3 |
2,981 |
by smlewis Mon, 2014-04-21 06:47 |
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How to remove clashes in peptide bonds and proline residue? by Anatol » Fri, 2012-08-31 09:26 |
2 |
2,919 |
by Anatol Mon, 2014-04-21 06:47 |
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Steps to use D-amino acids by tevang » Mon, 2012-09-10 15:42 |
15 |
15,264 |
by tevang Mon, 2014-04-21 06:47 |
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enzdes error by bo » Tue, 2012-08-21 09:12 |
4 |
4,035 |
by bo Mon, 2014-04-21 06:47 |
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Rosetta Dock with MPI / PBS by edpryor » Wed, 2012-09-05 11:04 |
3 |
6,102 |
by smlewis Mon, 2014-04-21 06:47 |
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Rotate MOVER by gw » Wed, 2012-08-15 12:09 |
5 |
4,999 |
by glemmon Mon, 2014-04-21 06:47 |
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Negative design: Can a filter call a mover in rosetta scripts? by jgans » Sat, 2012-09-08 21:28 |
2 |
3,412 |
by rmoretti Mon, 2014-04-21 06:47 |
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packstat in InterfaceAnalyzer by Anonymous » Mon, 2012-08-20 03:19 |
22 |
17,631 |
by Anonymous Mon, 2014-04-21 06:47 |
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Loop Modeling Deletes Residues by Julix » Wed, 2012-09-05 10:14 |
7 |
6,428 |
by smlewis Mon, 2014-04-21 06:47 |
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Copying angles (pose.set_phi()) from a substructure with the same sequence to pose doesn't produce the exact same substructure? by resiros » Wed, 2012-08-22 07:20 |
13 |
9,983 |
by smlewis Mon, 2014-04-21 06:47 |
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Does Rosetta have an app for detecting brakes and clashes in proteins by Anatol » Sat, 2012-09-08 15:48 |
3 |
4,197 |
by smlewis Mon, 2014-04-21 06:47 |
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rs filter for terms in .sc files by gw » Sat, 2012-08-18 16:20 |
4 |
4,427 |
by gw Mon, 2014-04-21 06:47 |
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AbinitioRelax with very small peptides by jamsmad » Tue, 2012-09-04 13:45 |
9 |
8,851 |
by jamsmad Mon, 2014-04-21 06:47 |
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header pathways not accessable: No such file or directory by rlwoltz » Tue, 2012-09-18 17:44 |
1 |
2,208 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb minimize sidechains with symmetric pose - recompile? by Anonymous » Wed, 2012-08-22 06:14 |
13 |
10,267 |
by jadolfbr Mon, 2014-04-21 06:47 |
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ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query! by Anonymous » Sat, 2012-09-08 09:33 |
1 |
2,898 |
by Anonymous Mon, 2014-04-21 06:47 |
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spline constraint by jadolfbr » Mon, 2012-06-25 04:43 |
3 |
3,740 |
by smlewis Mon, 2014-04-21 06:47 |
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Error running design in 3.4 by inder » Thu, 2012-07-05 19:27 |
2 |
3,336 |
by inder Mon, 2014-04-21 06:47 |
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How to import SymmDock models into Rosetta for local docking and energy minimization by devroop » Fri, 2012-07-20 13:20 |
1 |
3,086 |
by smlewis Mon, 2014-04-21 06:47 |
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RNA Denovo RMSD data by eremma » Thu, 2012-08-02 01:40 |
31 |
25,021 |
by eremma Mon, 2014-04-21 06:47 |
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The design of a helical peptide by Jacob-kong » Tue, 2012-06-26 06:26 |
6 |
7,770 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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unknown constraint function type: AtomPair ? by jiongzhang » Sun, 2012-07-15 02:13 |
4 |
4,161 |
by jiongzhang Mon, 2014-04-21 06:47 |
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How to insert a TER line between docking partners by devroop » Sun, 2012-07-29 13:48 |
1 |
3,071 |
by smlewis Mon, 2014-04-21 06:47 |
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postive score models from AbinitioRelax by xpzhang » Fri, 2012-06-22 12:34 |
4 |
3,926 |
by smlewis Mon, 2014-04-21 06:47 |
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How to site the scoring application in rosetta3.1? by doranhen » Thu, 2012-07-05 10:07 |
1 |
2,321 |
by smlewis Mon, 2014-04-21 06:47 |
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protein protein docking pipeline by dzhao » Thu, 2012-07-19 06:25 |
4 |
5,575 |
by smlewis Mon, 2014-04-21 06:47 |
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Scoring when the protein is a different length by gw » Wed, 2012-08-01 08:53 |
1 |
2,757 |
by smlewis Mon, 2014-04-21 06:47 |
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Discarding atoms for fixbb by Jacob-kong » Tue, 2012-06-26 06:23 |
4 |
5,025 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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optH flag makes hydrogen bond energy scores worse... by tsjain » Fri, 2012-07-13 14:04 |
6 |
6,298 |
by smlewis Mon, 2014-04-21 06:47 |
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Flexible backbone design using PSSM by kalicuta » Thu, 2012-07-26 13:38 |
4 |
4,666 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to generate a symmetry definition file for octahedral symmetry? by Anonymous » Wed, 2012-08-15 05:20 |
0 |
2,378 |
by Anonymous Mon, 2014-04-21 06:47 |
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Does the energy score output by fixbb design have unit? by Lindsay » Mon, 2012-06-18 15:03 |
2 |
2,925 |
by Lindsay Mon, 2014-04-21 06:47 |
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Need help with compilation (How to test if compilation is sucessful) by greenfur » Fri, 2012-06-29 12:29 |
1 |
2,890 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop Modelling: ERROR: switch_to_residue_type_set fails by smiruthi » Wed, 2012-07-18 14:48 |
2 |
3,392 |
by smlewis Mon, 2014-04-21 06:47 |
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how to output a structure when scoring it? by tianbu » Tue, 2012-07-31 09:38 |
3 |
3,944 |
by rmoretti Mon, 2014-04-21 06:47 |
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prepack vs. relax with bb_cst by Anonymous » Mon, 2012-06-25 06:50 |
1 |
2,430 |
by smlewis Mon, 2014-04-21 06:47 |
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Using mode=profile by Biokhar » Fri, 2012-07-06 00:29 |
2 |
3,104 |
by scombs Mon, 2014-04-21 06:47 |
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Scoring Electrostatics by aroop » Tue, 2012-08-07 11:41 |
5 |
5,185 |
by aroop Mon, 2014-04-21 06:47 |
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how to transfer the rosetta score to physical unit? by Lindsay » Thu, 2012-06-28 09:33 |
7 |
7,532 |
by Lindsay Mon, 2014-04-21 06:47 |
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Error when renumbering PDB by dzhao » Wed, 2012-07-18 01:03 |
7 |
8,827 |
by rmoretti Mon, 2014-04-21 06:47 |
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Error Atom_::dihedral_between_bonded_children by abiadak » Mon, 2012-07-30 06:34 |
2 |
3,719 |
by abiadak Mon, 2014-04-21 06:47 |
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force point mutation with fixbb by Anonymous » Wed, 2012-06-13 09:15 |
3 |
3,713 |
by smlewis Mon, 2014-04-21 06:47 |
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how to set the output name for fixbb design by Lindsay » Mon, 2012-04-30 09:32 |
1 |
2,016 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb program by Lindsay » Tue, 2012-05-08 13:56 |
3 |
3,223 |
by AndrewLeaver-Fay Mon, 2014-04-21 06:47 |
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what is "-relax:sequence" ? by Anonymous » Fri, 2012-06-08 06:31 |
10 |
8,509 |
by smlewis Mon, 2014-04-21 06:47 |
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Comparative modelling of dimer by rt1108 » Fri, 2012-06-15 07:31 |
1 |
2,619 |
by smlewis Mon, 2014-04-21 06:47 |
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Don't want to output the design structure by Lindsay » Wed, 2012-05-02 08:02 |
6 |
5,314 |
by Anonymous Mon, 2014-04-21 06:47 |
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Question regarding Mlipo score by DanielK » Tue, 2012-05-29 02:04 |
4 |
4,489 |
by smlewis Mon, 2014-04-21 06:47 |
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Biopython error in mac os x by vinodh » Tue, 2012-06-12 12:23 |
3 |
4,024 |
by jadolfbr Mon, 2014-04-21 06:47 |
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tyrosine structure error by dave » Mon, 2012-04-30 04:38 |
1 |
2,055 |
by frichter Mon, 2014-04-21 06:47 |
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Rosetta reference energy by Lindsay » Mon, 2012-05-07 07:56 |
9 |
8,883 |
by Lindsay Mon, 2014-04-21 06:47 |
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two questions about "Prepare structures for use in Rosetta" by Anonymous » Wed, 2012-06-06 08:13 |
6 |
5,625 |
by Anonymous Mon, 2014-04-21 06:47 |
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decoy vs pose by Anonymous » Fri, 2012-06-15 02:46 |
1 |
2,559 |
by smlewis Mon, 2014-04-21 06:47 |
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total energy score of the pdb structure by Lindsay » Tue, 2012-05-01 12:14 |
4 |
6,053 |
by Lindsay Mon, 2014-04-21 06:47 |
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Speeding up docking to a large complex by skovacs » Thu, 2012-05-10 20:50 |
30 |
25,933 |
by smlewis Mon, 2014-04-21 06:47 |
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about Residue Number in Rosetta by jiongzhang » Mon, 2012-06-11 14:58 |
7 |
9,869 |
by smlewis Mon, 2014-04-21 06:47 |
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symmetric docking application rosetta3.2: the docking_local_refine flag by doranhen » Sun, 2012-05-06 02:20 |
2 |
3,006 |
by doranhen Mon, 2014-04-21 06:47 |
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Questions about Monte Carlo Simulated Annealing algorithm in the design protocols by mdyini » Thu, 2012-05-31 12:39 |
3 |
5,373 |
by smlewis Mon, 2014-04-21 06:47 |
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Warning when running cluster program by Anonymous » Fri, 2012-06-15 02:39 |
14 |
10,780 |
by Anonymous Mon, 2014-04-21 06:47 |
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Fixed bb design with hydrogen bond constraint by bharat_46010 » Mon, 2012-04-30 22:56 |
6 |
5,624 |
by smlewis Mon, 2014-04-21 06:47 |
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hydrophobicity patch by Lindsay » Fri, 2012-05-04 08:24 |
7 |
8,575 |
by Lindsay Mon, 2014-04-21 06:47 |
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How to get multiple chains in PDB from Fold and Dock by arthuc01 » Tue, 2012-05-29 02:05 |
9 |
8,692 |
by arthuc01 Mon, 2014-04-21 06:47 |
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Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:19 |
2 |
3,725 |
by rmoretti Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
0 |
1,351 |
by DanielK Mon, 2014-04-21 06:47 |
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what option should I use if I want to use the dfire in 3.4 by Lindsay » Thu, 2012-04-12 05:19 |
3 |
3,469 |
by smlewis Mon, 2014-04-21 06:47 |
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Simple FoldTree Question by gipsonb » Wed, 2012-04-25 18:19 |
3 |
3,543 |
by gipsonb Mon, 2014-04-21 06:47 |
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double mutations scan by Lindsay » Fri, 2012-04-27 12:51 |
2 |
2,808 |
by Lindsay Mon, 2014-04-21 06:47 |
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how to optimize the weights? by Lindsay » Tue, 2012-04-10 07:40 |
7 |
5,825 |
by rmoretti Mon, 2014-04-21 06:47 |
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Possible documentation error by imurch » Tue, 2012-04-17 00:11 |
1 |
2,290 |
by Anonymous Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
0 |
1,521 |
by DanielK Mon, 2014-04-21 06:47 |
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Energy Calculation in Rosetta3.4 by sdg_lab » Thu, 2012-04-12 04:49 |
6 |
10,830 |
by rmoretti Mon, 2014-04-21 06:47 |
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