You are here
Rosetta 3 - General
Log in to post new content in the forum.
| Topic / Topic starter | Replies | Views |
Last post |
|
|---|---|---|---|---|
|
computer specifications by rlwoltz » Tue, 2012-10-09 16:11 |
4 |
5,338 |
by rlwoltz Mon, 2014-04-21 06:47 |
|
|
mitochondria protein modeling by rlwoltz » Fri, 2012-10-26 14:32 |
6 |
6,029 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ERROR - PDB's with occupancy field equal '1.0' by khanhbinh » Sun, 2012-09-23 09:38 |
1 |
2,050 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
AtomTree::torsion_angle() can't find dof! in match and enzdes by petrikigor » Fri, 2012-10-19 09:49 |
1 |
2,269 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
loop design by varma » Sun, 2012-11-04 21:25 |
2 |
3,443 |
by varma Mon, 2014-04-21 06:47 |
|
|
Does Rosetta have an app for detecting brakes and clashes in proteins by Anatol » Sat, 2012-09-08 15:48 |
3 |
3,919 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
rs filter for terms in .sc files by gw » Sat, 2012-08-18 16:20 |
4 |
4,150 |
by gw Mon, 2014-04-21 06:47 |
|
|
AbinitioRelax with very small peptides by jamsmad » Tue, 2012-09-04 13:45 |
9 |
8,283 |
by jamsmad Mon, 2014-04-21 06:47 |
|
|
header pathways not accessable: No such file or directory by rlwoltz » Tue, 2012-09-18 17:44 |
1 |
2,071 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
fixbb minimize sidechains with symmetric pose - recompile? by Anonymous » Wed, 2012-08-22 06:14 |
13 |
9,596 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query! by Anonymous » Sat, 2012-09-08 09:33 |
1 |
2,740 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh by tsjain » Wed, 2012-08-15 12:20 |
3 |
2,781 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to remove clashes in peptide bonds and proline residue? by Anatol » Fri, 2012-08-31 09:26 |
2 |
2,729 |
by Anatol Mon, 2014-04-21 06:47 |
|
|
Steps to use D-amino acids by tevang » Mon, 2012-09-10 15:42 |
15 |
14,297 |
by tevang Mon, 2014-04-21 06:47 |
|
|
enzdes error by bo » Tue, 2012-08-21 09:12 |
4 |
3,784 |
by bo Mon, 2014-04-21 06:47 |
|
|
Rosetta Dock with MPI / PBS by edpryor » Wed, 2012-09-05 11:04 |
3 |
5,831 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Rotate MOVER by gw » Wed, 2012-08-15 12:09 |
5 |
4,693 |
by glemmon Mon, 2014-04-21 06:47 |
|
|
Negative design: Can a filter call a mover in rosetta scripts? by jgans » Sat, 2012-09-08 21:28 |
2 |
3,201 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
packstat in InterfaceAnalyzer by Anonymous » Mon, 2012-08-20 03:19 |
22 |
16,416 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
Loop Modeling Deletes Residues by Julix » Wed, 2012-09-05 10:14 |
7 |
6,034 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Copying angles (pose.set_phi()) from a substructure with the same sequence to pose doesn't produce the exact same substructure? by resiros » Wed, 2012-08-22 07:20 |
13 |
9,287 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Need help with compilation (How to test if compilation is sucessful) by greenfur » Fri, 2012-06-29 12:29 |
1 |
2,741 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Loop Modelling: ERROR: switch_to_residue_type_set fails by smiruthi » Wed, 2012-07-18 14:48 |
2 |
3,190 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
how to output a structure when scoring it? by tianbu » Tue, 2012-07-31 09:38 |
3 |
3,717 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
prepack vs. relax with bb_cst by Anonymous » Mon, 2012-06-25 06:50 |
1 |
2,298 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Using mode=profile by Biokhar » Fri, 2012-07-06 00:29 |
2 |
2,904 |
by scombs Mon, 2014-04-21 06:47 |
|
|
Scoring Electrostatics by aroop » Tue, 2012-08-07 11:41 |
5 |
4,827 |
by aroop Mon, 2014-04-21 06:47 |
|
|
how to transfer the rosetta score to physical unit? by Lindsay » Thu, 2012-06-28 09:33 |
7 |
7,058 |
by Lindsay Mon, 2014-04-21 06:47 |
|
|
Error when renumbering PDB by dzhao » Wed, 2012-07-18 01:03 |
7 |
8,362 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Error Atom_::dihedral_between_bonded_children by abiadak » Mon, 2012-07-30 06:34 |
2 |
3,492 |
by abiadak Mon, 2014-04-21 06:47 |
|
|
spline constraint by jadolfbr » Mon, 2012-06-25 04:43 |
3 |
3,517 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Error running design in 3.4 by inder » Thu, 2012-07-05 19:27 |
2 |
3,164 |
by inder Mon, 2014-04-21 06:47 |
|
|
How to import SymmDock models into Rosetta for local docking and energy minimization by devroop » Fri, 2012-07-20 13:20 |
1 |
2,898 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
RNA Denovo RMSD data by eremma » Thu, 2012-08-02 01:40 |
31 |
23,420 |
by eremma Mon, 2014-04-21 06:47 |
|
|
The design of a helical peptide by Jacob-kong » Tue, 2012-06-26 06:26 |
6 |
7,327 |
by Jacob-kong Mon, 2014-04-21 06:47 |
|
|
unknown constraint function type: AtomPair ? by jiongzhang » Sun, 2012-07-15 02:13 |
4 |
3,893 |
by jiongzhang Mon, 2014-04-21 06:47 |
|
|
How to insert a TER line between docking partners by devroop » Sun, 2012-07-29 13:48 |
1 |
2,919 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
postive score models from AbinitioRelax by xpzhang » Fri, 2012-06-22 12:34 |
4 |
3,659 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to site the scoring application in rosetta3.1? by doranhen » Thu, 2012-07-05 10:07 |
1 |
2,184 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
protein protein docking pipeline by dzhao » Thu, 2012-07-19 06:25 |
4 |
5,240 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Scoring when the protein is a different length by gw » Wed, 2012-08-01 08:53 |
1 |
2,598 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Discarding atoms for fixbb by Jacob-kong » Tue, 2012-06-26 06:23 |
4 |
4,692 |
by Jacob-kong Mon, 2014-04-21 06:47 |
|
|
optH flag makes hydrogen bond energy scores worse... by tsjain » Fri, 2012-07-13 14:04 |
6 |
5,929 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Flexible backbone design using PSSM by kalicuta » Thu, 2012-07-26 13:38 |
4 |
4,362 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
How to generate a symmetry definition file for octahedral symmetry? by Anonymous » Wed, 2012-08-15 05:20 |
0 |
2,258 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
Does the energy score output by fixbb design have unit? by Lindsay » Mon, 2012-06-18 15:03 |
2 |
2,725 |
by Lindsay Mon, 2014-04-21 06:47 |
|
|
symmetric docking application rosetta3.2: the docking_local_refine flag by doranhen » Sun, 2012-05-06 02:20 |
2 |
2,829 |
by doranhen Mon, 2014-04-21 06:47 |
|
|
Questions about Monte Carlo Simulated Annealing algorithm in the design protocols by mdyini » Thu, 2012-05-31 12:39 |
3 |
5,124 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Warning when running cluster program by Anonymous » Fri, 2012-06-15 02:39 |
14 |
10,025 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
Fixed bb design with hydrogen bond constraint by bharat_46010 » Mon, 2012-04-30 22:56 |
6 |
5,259 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
hydrophobicity patch by Lindsay » Fri, 2012-05-04 08:24 |
7 |
7,983 |
by Lindsay Mon, 2014-04-21 06:47 |
|
|
How to get multiple chains in PDB from Fold and Dock by arthuc01 » Tue, 2012-05-29 02:05 |
9 |
8,214 |
by arthuc01 Mon, 2014-04-21 06:47 |
|
|
force point mutation with fixbb by Anonymous » Wed, 2012-06-13 09:15 |
3 |
3,479 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
how to set the output name for fixbb design by Lindsay » Mon, 2012-04-30 09:32 |
1 |
1,880 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
fixbb program by Lindsay » Tue, 2012-05-08 13:56 |
3 |
3,012 |
by AndrewLeaver-Fay Mon, 2014-04-21 06:47 |
|
|
what is "-relax:sequence" ? by Anonymous » Fri, 2012-06-08 06:31 |
10 |
7,932 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Comparative modelling of dimer by rt1108 » Fri, 2012-06-15 07:31 |
1 |
2,468 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Don't want to output the design structure by Lindsay » Wed, 2012-05-02 08:02 |
6 |
4,945 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
Question regarding Mlipo score by DanielK » Tue, 2012-05-29 02:04 |
4 |
4,198 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Biopython error in mac os x by vinodh » Tue, 2012-06-12 12:23 |
3 |
3,724 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
tyrosine structure error by dave » Mon, 2012-04-30 04:38 |
1 |
1,922 |
by frichter Mon, 2014-04-21 06:47 |
|
|
Rosetta reference energy by Lindsay » Mon, 2012-05-07 07:56 |
9 |
8,331 |
by Lindsay Mon, 2014-04-21 06:47 |
|
|
two questions about "Prepare structures for use in Rosetta" by Anonymous » Wed, 2012-06-06 08:13 |
6 |
5,246 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
decoy vs pose by Anonymous » Fri, 2012-06-15 02:46 |
1 |
2,366 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
total energy score of the pdb structure by Lindsay » Tue, 2012-05-01 12:14 |
4 |
5,733 |
by Lindsay Mon, 2014-04-21 06:47 |
|
|
Speeding up docking to a large complex by skovacs » Thu, 2012-05-10 20:50 |
30 |
24,328 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
about Residue Number in Rosetta by jiongzhang » Mon, 2012-06-11 14:58 |
7 |
9,356 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
The -symmetry:perturb_rigid_body_dofs flag by doranhen » Sat, 2012-04-28 13:01 |
2 |
2,401 |
by doranhen Mon, 2014-04-21 06:47 |
|
|
symmetric Docking- TRIMER in Rosetta 3.4 ? by sdg_lab » Thu, 2012-04-12 04:22 |
1 |
3,255 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:20 |
1 |
3,179 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
0 |
1,486 |
by DanielK Mon, 2014-04-21 06:47 |
|
|
General Protein Folding Question by twopint23oz » Sun, 2012-04-01 22:57 |
7 |
5,658 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Energy and RG in the new rosetta3.4 ( like RG_Energy.cc and RG_Energy_Fast.cc ) by sdg_lab » Thu, 2012-04-12 08:49 |
1 |
1,795 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
what's the difference between recovery and sequence identity by Lindsay » Thu, 2012-04-26 05:46 |
3 |
3,994 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Problem with clustering 1000 centroid pdbs by doranhen » Sat, 2012-04-28 10:34 |
6 |
5,924 |
by doranhen Mon, 2014-04-21 06:47 |
|
|
what is minirosetta by Lindsay » Tue, 2012-04-10 07:48 |
2 |
9,264 |
by Lindsay Mon, 2014-04-21 06:47 |
|
|
Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:19 |
2 |
3,524 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
0 |
1,260 |
by DanielK Mon, 2014-04-21 06:47 |
|
|
what option should I use if I want to use the dfire in 3.4 by Lindsay » Thu, 2012-04-12 05:19 |
3 |
3,237 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Simple FoldTree Question by gipsonb » Wed, 2012-04-25 18:19 |
3 |
3,302 |
by gipsonb Mon, 2014-04-21 06:47 |
|
|
double mutations scan by Lindsay » Fri, 2012-04-27 12:51 |
2 |
2,622 |
by Lindsay Mon, 2014-04-21 06:47 |
|
|
how to optimize the weights? by Lindsay » Tue, 2012-04-10 07:40 |
7 |
5,418 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Possible documentation error by imurch » Tue, 2012-04-17 00:11 |
1 |
2,159 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
0 |
1,436 |
by DanielK Mon, 2014-04-21 06:47 |
|
|
Energy Calculation in Rosetta3.4 by sdg_lab » Thu, 2012-04-12 04:49 |
6 |
10,175 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3? by jiongzhang » Fri, 2012-04-20 13:35 |
2 |
2,527 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
2 |
2,563 |
by DanielK Mon, 2014-04-21 06:47 |
|
|
how to make benchmark? by albumns » Wed, 2012-04-04 05:23 |
23 |
25,749 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Symmetric Docking (Making Trimer from Monomerics Units) by sdg_lab » Thu, 2012-04-12 09:21 |
1 |
1,963 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Picking the correct model from a large set of decoys (30,000+) by brspurri » Thu, 2012-04-26 15:37 |
4 |
4,994 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
fixbb design use by Lindsay » Fri, 2012-03-23 09:05 |
2 |
2,479 |
by Lindsay Mon, 2014-04-21 06:47 |
|
|
How to make Rosetta's sampling more aggresive ? by jiongzhang » Mon, 2012-03-12 11:04 |
1 |
1,965 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
is it possible to generate models without hydrogen? by albumns » Fri, 2012-03-02 12:24 |
9 |
7,233 |
by albumns Mon, 2014-04-21 06:47 |
|
|
Does comparative modeling works for membrane proteins by justin » Wed, 2012-03-21 04:58 |
1 |
1,978 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to run docking in rosetta with small molecule by ajaniharesh » Tue, 2012-02-28 03:58 |
1 |
3,665 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
About RosettaScript examples by jiongzhang » Thu, 2012-03-08 10:50 |
1 |
2,097 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
how to use AbinitioRelax.mpi.linuxgccrelease? by albumns » Mon, 2012-03-26 22:50 |
5 |
5,923 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
python problem? by albumns » Fri, 2012-03-02 11:03 |
1 |
1,895 |
by albumns Mon, 2014-04-21 06:47 |
|
|
Documentation missing in MultiGraft by aroop » Thu, 2012-03-15 07:39 |
2 |
2,597 |
by aroop Mon, 2014-04-21 06:47 |
|
|
redesign a enzyme by fixing the active site by Lindsay » Wed, 2012-03-07 08:23 |
2 |
2,684 |
by Lindsay Mon, 2014-04-21 06:47 |
Log in to post new content in the forum.
