
You are here
Rosetta 3 - General
Log in to post new content in the forum.
Topic / Topic starter | Replies | Views |
Last post![]() |
|
---|---|---|---|---|
Enzyme Design by bharat_46010 » Tue, 2014-11-25 23:55 |
4 |
5,166 |
by bharat_46010 Mon, 2014-12-15 20:51 |
|
abnitio in only part of pdb and map fitting by tiagogomes89 » Mon, 2014-12-15 08:57 |
0 |
1,321 |
by tiagogomes89 Mon, 2014-12-15 08:57 |
|
ratio of conformers and docking output by pramod » Fri, 2014-12-12 12:54 |
1 |
1,969 |
by rmoretti Mon, 2014-12-15 02:37 |
|
How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)? by lanselibai » Thu, 2014-12-04 13:16 |
4 |
5,462 |
by lanselibai Fri, 2014-12-12 10:27 |
|
Fragment picker by phanvy » Mon, 2014-12-08 04:25 |
2 |
2,694 |
by phanvy Wed, 2014-12-10 00:17 |
|
What is the total_score that relax outputs? by cossio » Tue, 2014-12-02 13:50 |
4 |
4,263 |
by cossio Thu, 2014-12-04 05:41 |
|
How to get the RMSD between two .pdb structures? by cossio » Wed, 2014-12-03 05:33 |
1 |
3,114 |
by rmoretti Wed, 2014-12-03 18:52 |
|
What is "residue packing", "repacking", and so on? by cossio » Wed, 2014-12-03 08:49 |
2 |
3,039 |
by cossio Wed, 2014-12-03 14:51 |
|
latest version of rosetta--unable to build models by pramod » Mon, 2014-11-03 11:40 |
10 |
9,241 |
by jadolfbr Wed, 2014-11-26 11:40 |
|
ignore loops on threading by fred » Tue, 2014-11-11 11:33 |
5 |
4,494 |
by rmoretti Tue, 2014-11-18 10:01 |
|
Suggestions for email notification & "category" for post by lanselibai » Sun, 2014-11-16 10:44 |
0 |
1,287 |
by lanselibai Sun, 2014-11-16 10:44 |
|
Run PackRotamersMover on specified rotamer set by pachecoj » Mon, 2014-11-10 06:51 |
2 |
2,418 |
by pachecoj Tue, 2014-11-11 19:30 |
|
minirosetta segmentation fault by sabine » Wed, 2013-12-11 13:08 |
13 |
14,267 |
by rmoretti Tue, 2014-11-11 13:56 |
|
Get nchi for heavy atoms by pachecoj » Tue, 2014-11-04 19:04 |
1 |
1,833 |
by rmoretti Tue, 2014-11-11 13:22 |
|
How to create a rotamer set that includes all possible rotamers of all possible amino acids by AyushGoyal » Thu, 2014-11-06 10:37 |
1 |
2,055 |
by smlewis Fri, 2014-11-07 12:03 |
|
Plexpepdock with Zn by phanvy » Wed, 2014-06-25 06:10 |
1 |
1,815 |
by rmoretti Tue, 2014-11-04 10:35 |
|
Possible Shellshock Patch problem results in no output files being written by hazards » Wed, 2014-10-22 13:48 |
3 |
5,889 |
by rmoretti Mon, 2014-11-03 16:39 |
|
Looking for a pdb.... by MarkW » Mon, 2014-10-13 15:45 |
8 |
7,158 |
by rmoretti Mon, 2014-11-03 16:30 |
|
Reproducing Robetta AB initio setup by jason-rosetta » Sat, 2014-10-04 04:26 |
1 |
1,977 |
by jadolfbr Fri, 2014-10-31 08:55 |
|
input_score_filter not taken by program cluster ? by Anonymous » Mon, 2012-06-11 09:14 |
9 |
7,812 |
by attesor Fri, 2014-10-31 04:49 |
|
cluster input_score_filter by lj269 » Thu, 2011-09-01 15:29 |
2 |
2,615 |
by attesor Fri, 2014-10-31 04:23 |
|
Rescoring protein docking decoys to get Irms by lj269 » Thu, 2014-10-23 13:23 |
3 |
3,580 |
by rmoretti Wed, 2014-10-29 14:30 |
|
Calculating binding affinity by phanvy » Wed, 2014-10-15 23:35 |
2 |
4,026 |
by phanvy Thu, 2014-10-16 18:54 |
|
Knowledge check on steric effects by pachecoj » Thu, 2014-10-16 09:13 |
1 |
2,047 |
by rmoretti Thu, 2014-10-16 10:33 |
|
ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116 by phanvy » Wed, 2014-10-08 22:28 |
2 |
2,586 |
by phanvy Wed, 2014-10-15 21:41 |
|
Questions on energy oddities by pachecoj » Wed, 2014-10-15 13:26 |
2 |
2,298 |
by pachecoj Wed, 2014-10-15 15:12 |
|
energy minimization of loop only by jtmacd » Wed, 2011-01-12 07:09 |
9 |
9,380 |
by lanselibai Wed, 2014-10-15 01:41 |
|
Write PDB with multiple side-chain configurations by pachecoj » Tue, 2014-09-30 21:42 |
2 |
2,552 |
by pachecoj Thu, 2014-10-09 18:15 |
|
Error : seqpos <= size() by phanvy » Sun, 2014-10-05 17:20 |
4 |
4,923 |
by phanvy Wed, 2014-10-08 01:42 |
|
Error when running FRAGMENT generation by phanvy » Sat, 2014-09-20 17:53 |
12 |
11,782 |
by rmoretti Mon, 2014-10-06 16:50 |
|
Memory leak? Memory consumption rises quickly when using JD2 app(s) by yuvals » Mon, 2014-10-06 11:35 |
1 |
1,892 |
by yuvals Mon, 2014-10-06 15:02 |
|
Error when using next-gen KIC (Signal 6) by janwp » Tue, 2014-08-26 08:36 |
1 |
2,546 |
by amelie Tue, 2014-09-30 14:29 |
|
what is 05.2009 ideal coordinates by Lindsay » Tue, 2014-09-23 20:36 |
3 |
2,957 |
by rmoretti Mon, 2014-09-29 13:45 |
|
Clustering using an disrupted run silent file by PaulaBanks » Mon, 2013-07-15 02:19 |
9 |
7,236 |
by rmoretti Wed, 2014-09-24 09:57 |
|
What is a "silent file"? by lanselibai » Mon, 2014-09-22 02:43 |
2 |
6,164 |
by lanselibai Mon, 2014-09-22 08:13 |
|
Rosetta membrane blastpgp/psiblast database problem for lips4 generation by fbarrera » Tue, 2014-09-16 11:45 |
1 |
2,637 |
by rmoretti Wed, 2014-09-17 10:06 |
|
Atom_.cc line 304 by fred » Thu, 2014-09-11 12:04 |
1 |
1,837 |
by rmoretti Fri, 2014-09-12 09:11 |
|
Evaluating energies on non-standard rotamer set by pachecoj » Sat, 2014-07-26 16:27 |
5 |
4,218 |
by pachecoj Sat, 2014-08-09 06:33 |
|
Adding noncanonical amino acid (PCA) to Rosetta 3 by JuliusSu » Fri, 2014-08-01 11:23 |
2 |
3,502 |
by JuliusSu Fri, 2014-08-08 02:07 |
|
Constraints and final scoring of satisfied constraints in ab initio by Azadeh » Tue, 2014-07-15 01:29 |
3 |
5,837 |
by rmoretti Thu, 2014-07-17 09:21 |
|
Evaluate Docking Result by byin » Thu, 2014-07-03 11:31 |
1 |
2,233 |
by rmoretti Wed, 2014-07-16 08:07 |
|
Question about wrong homology design by mony2182 » Fri, 2014-07-04 10:26 |
1 |
2,040 |
by rmoretti Mon, 2014-07-07 08:08 |
|
Question about run FLEXPEPDOCK with 3 chain by phanvy » Wed, 2014-07-02 08:46 |
3 |
2,994 |
by phanvy Wed, 2014-07-02 23:32 |
|
What's the unit of Rosetta energy function? by Run » Tue, 2014-06-24 00:44 |
1 |
5,523 |
by rmoretti Tue, 2014-07-01 12:45 |
|
Ambiguous constraints are ignored in ab initio by mschneid » Wed, 2014-06-18 04:33 |
1 |
2,043 |
by rmoretti Tue, 2014-07-01 12:21 |
|
meaning of the clustering the output files by phanvy » Tue, 2014-06-24 07:11 |
1 |
1,707 |
by rmoretti Tue, 2014-07-01 12:07 |
|
Plexpepdock with Zn by phanvy » Sun, 2014-06-22 22:40 |
1 |
1,752 |
by nawsad Wed, 2014-06-25 13:26 |
|
PUBLICATION using Rosetta as a method by phanvy » Thu, 2014-06-19 08:33 |
2 |
2,576 |
by phanvy Sun, 2014-06-22 23:29 |
|
MPI nodes hanging and output log incomplete by yuvals » Wed, 2014-06-18 05:40 |
1 |
5,199 |
by yuvals Sat, 2014-06-21 02:17 |
|
Paper about Plexpepdock by phanvy » Wed, 2014-06-18 06:29 |
1 |
1,715 |
by nawsad Fri, 2014-06-20 03:00 |
|
Cluster decoys after running PlexPepDock by phanvy » Thu, 2014-06-19 06:03 |
1 |
1,877 |
by nawsad Fri, 2014-06-20 02:48 |
|
ERROR when run prepacking pdbfile in Rosetta 3.4 by phanvy » Thu, 2014-04-17 00:04 |
14 |
12,819 |
by phanvy Wed, 2014-06-18 07:50 |
|
no template pdb provided for alignment by HZHANG020 » Sat, 2014-06-14 06:27 |
1 |
2,271 |
by rmoretti Mon, 2014-06-16 08:23 |
|
make_fragments.pl without sparks by nannemdp » Mon, 2014-06-09 13:18 |
1 |
1,934 |
by rmoretti Tue, 2014-06-10 11:34 |
|
question about the exposed strand results in beta_strand_homodimer_design demo by szypanther » Wed, 2014-06-04 00:47 |
1 |
1,926 |
by rmoretti Mon, 2014-06-09 10:05 |
|
a question about protein-ligand docking in generating 1SW2 conformers by Ryhon Wang » Wed, 2014-05-28 22:27 |
2 |
3,030 |
by rmoretti Tue, 2014-06-03 11:45 |
|
error when running beta_strand_homodimer_design by szypanther » Sun, 2014-05-25 20:22 |
2 |
3,115 |
by szypanther Mon, 2014-05-26 22:03 |
|
Energy minimization of a crystal structure with residues mutated in pymol by bharat_46010 » Wed, 2014-05-21 19:52 |
1 |
3,583 |
by rmoretti Fri, 2014-05-23 08:09 |
|
Access sigma values for rotamers by pachecoj » Thu, 2014-05-15 07:10 |
5 |
4,723 |
by rmoretti Sat, 2014-05-17 14:10 |
|
Submit job in parallel : MPI and jd2 ? by anusmita_sahoo » Wed, 2010-03-31 00:18 |
18 |
16,472 |
by jadolfbr Wed, 2014-05-14 08:51 |
|
Computing pairwise energies for rotamers by pachecoj » Sat, 2014-05-03 17:52 |
1 |
1,890 |
by rmoretti Mon, 2014-05-12 07:50 |
|
Side-chain packing with multiple chains by pachecoj » Mon, 2014-04-21 16:53 |
3 |
3,859 |
by jadolfbr Mon, 2014-04-21 21:05 |
|
protein binding energy problem by Lindsay » Thu, 2014-04-17 23:10 |
5 |
5,032 |
by jadolfbr Mon, 2014-04-21 07:30 |
|
Configuration of Robetta fragment libraries by Run » Fri, 2014-01-24 23:03 |
2 |
2,573 |
by Run Mon, 2014-04-21 06:48 |
|
Centroid disulfide score weights by vasek » Wed, 2014-01-22 23:34 |
0 |
1,396 |
by vasek Mon, 2014-04-21 06:48 |
|
Multigraft by bo » Tue, 2013-12-24 18:06 |
2 |
2,756 |
by Sergey Menis Mon, 2014-04-21 06:48 |
|
get_distances command in rosetta 3.5 by pramod » Mon, 2014-01-20 11:31 |
3 |
2,984 |
by rmoretti Mon, 2014-04-21 06:48 |
|
Protein folding using Monte Carlo derived techniques and implicit solvation by hefeweizen » Tue, 2013-12-10 06:30 |
3 |
3,550 |
by rmoretti Mon, 2014-04-21 06:48 |
|
rosetta nonlocal application by mintseris » Tue, 2013-12-31 13:13 |
1 |
1,967 |
by rmoretti Mon, 2014-04-21 06:48 |
|
run Rosetta under windows prompt by skipper » Fri, 2013-12-20 21:16 |
3 |
3,815 |
by rmoretti Mon, 2014-04-21 06:48 |
|
Fastrelax energy by Lindsay » Thu, 2014-01-16 21:04 |
3 |
4,370 |
by rmoretti Mon, 2014-04-21 06:48 |
|
scoring models by peony » Fri, 2013-12-06 02:45 |
5 |
5,040 |
by rmoretti Mon, 2014-04-21 06:48 |
|
Dumb question: Rosetta 3 vs Rosetta++, what's the difference? by mintseris » Tue, 2013-12-31 13:03 |
1 |
2,231 |
by rmoretti Mon, 2014-04-21 06:48 |
|
sign of ddG of mutation by Lindsay » Wed, 2013-11-27 00:25 |
2 |
3,981 |
by Lindsay Mon, 2014-04-21 06:48 |
|
fix backbone design of interface residue by Lindsay » Tue, 2013-12-17 19:23 |
3 |
3,857 |
by rmoretti Mon, 2014-04-21 06:48 |
|
fragment picking with 100% sequence identity by nawsad » Thu, 2013-12-05 07:12 |
1 |
2,744 |
by rmoretti Mon, 2014-04-21 06:48 |
|
Handling peptide with noncanonical aminoacids by tigerous » Sat, 2013-12-28 17:16 |
1 |
3,147 |
by rmoretti Mon, 2014-04-21 06:48 |
|
extraction of pdbs from silent.out files on Mac by pramod » Tue, 2014-01-07 11:43 |
5 |
6,478 |
by rmoretti Mon, 2014-04-21 06:48 |
|
No structure mods allowed during scoring! error by jadolfbr » Wed, 2013-12-04 14:06 |
2 |
2,724 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
how to design a protein complex by Lindsay » Tue, 2013-11-05 20:24 |
11 |
10,960 |
by Lindsay Mon, 2014-04-21 06:48 |
|
force hydrogen rebuild on input by jtmacd » Mon, 2013-11-18 08:28 |
2 |
2,557 |
by jtmacd Mon, 2014-04-21 06:48 |
|
P-P docking with ambiguous constraints by Anouk » Fri, 2013-11-08 11:38 |
5 |
5,851 |
by rmoretti Mon, 2014-04-21 06:48 |
|
MPI stall by jadolfbr » Thu, 2013-10-10 18:59 |
9 |
9,112 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
Problem in 3D structure building of ss DNA aptamer by irshadbaig » Sun, 2013-11-17 20:15 |
1 |
3,652 |
by rmoretti Mon, 2014-04-21 06:48 |
|
which modules support MPI now? by albumns » Fri, 2013-11-08 01:32 |
1 |
1,862 |
by rmoretti Mon, 2014-04-21 06:48 |
|
relax structure before design? by Lindsay » Tue, 2013-11-05 20:50 |
7 |
8,766 |
by rmoretti Mon, 2014-04-21 06:48 |
|
talaris2013 energy terms modifications by peony » Sat, 2013-11-23 02:48 |
8 |
14,676 |
by rmoretti Mon, 2014-04-21 06:48 |
|
pro_closure energy scoring function by peony » Sat, 2013-11-16 13:22 |
5 |
5,116 |
by rmoretti Mon, 2014-04-21 06:48 |
|
minimum number of nstruct to build at 65% homolgy by MRH » Thu, 2013-08-22 07:29 |
2 |
2,590 |
by MRH Mon, 2014-04-21 06:48 |
|
Comparison between two fragment pickers by qlj » Mon, 2013-09-02 06:34 |
3 |
3,216 |
by rmoretti Mon, 2014-04-21 06:48 |
|
rosettautil module not imported cleanly by python scripts by franfdez » Tue, 2013-08-27 01:25 |
1 |
2,704 |
by rmoretti Mon, 2014-04-21 06:48 |
|
ddg calculation by Lindsay » Thu, 2013-09-12 10:19 |
3 |
4,990 |
by Lindsay Mon, 2014-04-21 06:48 |
|
Basic help with Protein-DNA and Protein-Protein modeling and engineering by Robert Evans » Sat, 2013-08-17 12:21 |
2 |
3,365 |
by Robert Evans Mon, 2014-04-21 06:48 |
|
Rosetta documentation by Ashafix » Sat, 2013-08-31 06:50 |
3 |
4,468 |
by Ashafix Mon, 2014-04-21 06:48 |
|
Clustering and Protein Preparation for docking by MRH » Sun, 2013-08-25 22:01 |
1 |
2,985 |
by rmoretti Mon, 2014-04-21 06:48 |
|
Available of some protocals mentioned in publications by SunH » Mon, 2013-09-09 20:47 |
1 |
1,811 |
by rmoretti Mon, 2014-04-21 06:48 |
|
Abinitio starts at the 27th amino acid by JadAbbass » Thu, 2013-08-29 05:38 |
3 |
3,165 |
by JadAbbass Mon, 2014-04-21 06:48 |
|
defining interface in interface analyzer by aa20 » Fri, 2013-09-27 11:08 |
5 |
5,920 |
by smlewis Mon, 2014-04-21 06:48 |
|
loop modeling by MRH » Thu, 2013-08-22 23:19 |
3 |
3,596 |
by MRH Mon, 2014-04-21 06:48 |
|
How to get the GDT_TS? by JadAbbass » Thu, 2013-09-05 11:59 |
3 |
4,844 |
by rmoretti Mon, 2014-04-21 06:48 |
Log in to post new content in the forum.
