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Rosetta 3 - General
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Clustering and Protein Preparation for docking by MRH » Sun, 2013-08-25 22:01 |
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2,611 |
by rmoretti Mon, 2014-04-21 06:48 |
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Available of some protocals mentioned in publications by SunH » Mon, 2013-09-09 20:47 |
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1,554 |
by rmoretti Mon, 2014-04-21 06:48 |
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Abinitio starts at the 27th amino acid by JadAbbass » Thu, 2013-08-29 05:38 |
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2,690 |
by JadAbbass Mon, 2014-04-21 06:48 |
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defining interface in interface analyzer by aa20 » Fri, 2013-09-27 11:08 |
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4,990 |
by smlewis Mon, 2014-04-21 06:48 |
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loop modeling by MRH » Thu, 2013-08-22 23:19 |
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3,110 |
by MRH Mon, 2014-04-21 06:48 |
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How to get the GDT_TS? by JadAbbass » Thu, 2013-09-05 11:59 |
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4,272 |
by rmoretti Mon, 2014-04-21 06:48 |
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What is the difference between F and S labeled decoys? by PaulaBanks » Tue, 2013-08-27 06:09 |
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2,489 |
by PaulaBanks Mon, 2014-04-21 06:48 |
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mutate residue at termini by jarek » Fri, 2013-09-13 09:24 |
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2,924 |
by jarek Mon, 2014-04-21 06:48 |
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minimum number of nstruct to build at 65% homolgy by MRH » Thu, 2013-08-22 07:29 |
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2,128 |
by MRH Mon, 2014-04-21 06:48 |
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Comparison between two fragment pickers by qlj » Mon, 2013-09-02 06:34 |
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2,782 |
by rmoretti Mon, 2014-04-21 06:48 |
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rosettautil module not imported cleanly by python scripts by franfdez » Tue, 2013-08-27 01:25 |
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2,372 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddg calculation by Lindsay » Thu, 2013-09-12 10:19 |
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4,332 |
by Lindsay Mon, 2014-04-21 06:48 |
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Rescoring regions of structures by erin_cutts » Mon, 2013-07-22 04:43 |
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2,271 |
by erin_cutts Mon, 2014-04-21 06:48 |
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best_ifaceE.py error by rosa » Fri, 2013-07-12 08:35 |
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4,907 |
by rosa Mon, 2014-04-21 06:48 |
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opt-E Reference energies by vijayan » Wed, 2013-08-07 07:35 |
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1,600 |
by rmoretti Mon, 2014-04-21 06:48 |
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dna_denovo by frits » Fri, 2013-07-12 06:12 |
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2,768 |
by frits Mon, 2014-04-21 06:48 |
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RosettaVIP by nick.polizzi » Tue, 2013-08-06 15:13 |
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5,495 |
by rmoretti Mon, 2014-04-21 06:48 |
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Unrecognized aa NO3 by JadAbbass » Sun, 2013-07-14 10:48 |
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3,219 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Rosetta Holes and Packstat scoring by nick.polizzi » Fri, 2013-08-02 09:06 |
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3,052 |
by rmoretti Mon, 2014-04-21 06:48 |
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Ligand conformations file in docking by rosa » Fri, 2013-07-12 09:21 |
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4,158 |
by rosa Mon, 2014-04-21 06:48 |
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missing amino acid by berk » Fri, 2013-06-14 06:07 |
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1,419 |
by smlewis Mon, 2014-04-21 06:48 |
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rna_denovo and minize_rna by frits » Wed, 2013-07-10 00:22 |
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2,231 |
by frits Mon, 2014-04-21 06:48 |
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loop file by banshee » Tue, 2013-06-04 13:26 |
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1,986 |
by banshee Mon, 2014-04-21 06:48 |
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problems with terminal caps by omirus » Tue, 2013-06-25 08:55 |
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21,629 |
by omirus Mon, 2014-04-21 06:48 |
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Loop modelling, by berk » Sat, 2013-06-08 08:29 |
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2,083 |
by berk Mon, 2014-04-21 06:48 |
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score terms by qlj » Wed, 2013-07-03 08:00 |
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3,262 |
by rmoretti Mon, 2014-04-21 06:48 |
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Helix at loop site by berk » Fri, 2013-05-31 07:04 |
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1,647 |
by smlewis Mon, 2014-04-21 06:48 |
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calculated ddG_bind converges to zero by fukamitka » Mon, 2013-06-24 20:32 |
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4,378 |
by fukamitka Mon, 2014-04-21 06:48 |
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rosettaremodel by berk » Fri, 2013-06-07 00:42 |
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2,385 |
by jadolfbr Mon, 2014-04-21 06:48 |
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loop modelling/Rosetta 3.4, 3.5 by berk » Tue, 2013-07-02 08:38 |
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4,436 |
by MRH Mon, 2014-04-21 06:48 |
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acceptable RMSD value in the clustered structures? by ritacc18 » Wed, 2013-06-19 14:53 |
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7,267 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaRemodel by berk » Wed, 2013-07-10 11:21 |
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1,997 |
by jadolfbr Mon, 2014-04-21 06:48 |
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replace a short helix by berk » Wed, 2013-06-05 10:19 |
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1,460 |
by rmoretti Mon, 2014-04-21 06:48 |
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Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem by ytao » Fri, 2013-06-28 12:13 |
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2,659 |
by ytao Mon, 2014-04-21 06:48 |
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protein interface design for multi-chain complex by jarod » Sun, 2013-05-05 23:18 |
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11,114 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to generate constraints of active sites from a pdb file of an enzyme by Albert » Sun, 2013-05-26 20:07 |
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2,740 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Which rosetta for antibody modelling? by oppopomoz » Wed, 2013-04-24 09:10 |
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2,224 |
by jadolfbr Mon, 2014-04-21 06:47 |
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How to extract specific pdb from silent files by eunwook » Tue, 2013-05-14 05:29 |
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11,978 |
by nawsad Mon, 2014-04-21 06:47 |
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pdb 2 silent with ss information by kalabharath » Sun, 2013-04-14 20:59 |
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1,788 |
by smlewis Mon, 2014-04-21 06:47 |
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prepare PDB with constrained relax by jarod » Sun, 2013-05-05 07:10 |
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4,107 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta forcefield terms and interpretation by zigeuner » Sat, 2013-05-25 16:59 |
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3,847 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to prevent rotamers from being pruned from the interaction graph? by msun » Wed, 2013-04-17 14:19 |
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2,052 |
by smlewis Mon, 2014-04-21 06:47 |
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Feedback for Loopmodeling module by zharmad » Tue, 2013-05-14 03:22 |
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1,440 |
by rmoretti Mon, 2014-04-21 06:47 |
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uninstalling or rebuilding rosetta by rlwoltz » Thu, 2013-04-11 11:45 |
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5,903 |
by rlwoltz Mon, 2014-04-21 06:47 |
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how to keep modeling ignored ERROR? by eunwook » Sat, 2013-04-27 05:44 |
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2,791 |
by eunwook Mon, 2014-04-21 06:47 |
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How to do ab initio with fixed part of protein by eunwook » Tue, 2013-04-16 03:00 |
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9,157 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to modify disulfide bonds constrain in homology modeling by eunwook » Mon, 2013-05-13 04:56 |
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2,222 |
by smlewis Mon, 2014-04-21 06:47 |
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fragment-based loop modeling to get a helix at the loop site by berk » Wed, 2013-05-29 06:00 |
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7,333 |
by rmoretti Mon, 2014-04-21 06:47 |
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membrane abinitio on heteromultimeric complexes by omirus » Fri, 2013-04-26 14:48 |
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12,597 |
by pledor Mon, 2014-04-21 06:47 |
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Talaris score function by nawsad » Tue, 2013-05-21 03:32 |
7 |
6,888 |
by rmoretti Mon, 2014-04-21 06:47 |
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fragment_picker error secondarysimilarity.cc line:132 by leanawen » Mon, 2013-04-15 14:33 |
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1,546 |
by smlewis Mon, 2014-04-21 06:47 |
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-loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease by tsjain » Tue, 2013-02-05 18:47 |
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2,855 |
by tsjain Mon, 2014-04-21 06:47 |
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create a centroid file from structure or NOE list by logandonaldson » Wed, 2013-03-20 12:23 |
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4,074 |
by smlewis Mon, 2014-04-21 06:47 |
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Give diferent chain information for a single sequence (comparative modeling) by Martin Floor » Tue, 2013-04-02 08:59 |
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3,473 |
by Martin Floor Mon, 2014-04-21 06:47 |
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jd2 time out error by ytao » Mon, 2013-03-04 20:47 |
2 |
1,983 |
by ytao Mon, 2014-04-21 06:47 |
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Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles? by nh_prt » Tue, 2013-03-26 12:22 |
3 |
2,607 |
by smlewis Mon, 2014-04-21 06:47 |
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flexible backbone design (fixbb+relax) by sdh_h » Mon, 2013-02-04 03:19 |
9 |
8,834 |
by gsmurphy Mon, 2014-04-21 06:47 |
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multiple cst files by logandonaldson » Wed, 2013-03-20 12:16 |
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3,234 |
by logandonaldson Mon, 2014-04-21 06:47 |
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how to make a combined PDB file? by fenghc » Mon, 2013-04-01 06:27 |
3 |
13,285 |
by smlewis Mon, 2014-04-21 06:47 |
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side-chain refinement by qlj » Wed, 2013-02-20 04:40 |
6 |
6,791 |
by qlj Mon, 2014-04-21 06:47 |
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Re: Using a database of loop conformations together with de novo folding protocol (Page: 1, 2)
by bharat_46010 » Mon, 2013-03-25 01:47 |
55 |
40,526 |
by bharat_46010 Mon, 2014-04-21 06:47 |
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run:test_cycles by ramin » Sun, 2013-03-10 11:05 |
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1,523 |
by smlewis Mon, 2014-04-21 06:47 |
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cluster pdb structures questions by ritacc18 » Thu, 2013-03-28 19:20 |
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5,584 |
by ritacc18 Mon, 2014-04-21 06:47 |
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What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize? by brspurri » Tue, 2013-02-12 08:19 |
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5,585 |
by smlewis Mon, 2014-04-21 06:47 |
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is there a preferred way to enforce an hydrogen bond ? by logandonaldson » Wed, 2013-03-20 13:14 |
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2,058 |
by rmoretti Mon, 2014-04-21 06:47 |
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ddG average energy by dave » Wed, 2013-04-03 03:36 |
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1,900 |
by rmoretti Mon, 2014-04-21 06:47 |
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ab initio folding part of a protein by attesor » Wed, 2013-03-06 04:39 |
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1,663 |
by smlewis Mon, 2014-04-21 06:47 |
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kinematic loop modeling/sequence design keeps crashing with segmentation fault by banshee » Thu, 2013-03-28 09:52 |
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6,272 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb and HETATM by doranhen » Mon, 2013-01-14 07:50 |
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2,649 |
by doranhen Mon, 2014-04-21 06:47 |
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How to put rdc data in refinement protocol? by zhisheng » Tue, 2012-11-20 03:55 |
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8,594 |
by rmoretti Mon, 2014-04-21 06:47 |
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fragment_picker problem by adva » Tue, 2012-12-18 01:15 |
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9,527 |
by sabine Mon, 2014-04-21 06:47 |
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nr.fasta by silvia » Wed, 2013-01-23 10:08 |
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8,731 |
by dgront Mon, 2014-04-21 06:47 |
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Rosetta repacking output by doranhen » Mon, 2012-12-03 03:44 |
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4,465 |
by doranhen Mon, 2014-04-21 06:47 |
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membrane ab initio error after montecarlo by adva » Mon, 2012-12-24 01:43 |
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4,529 |
by tevang Mon, 2014-04-21 06:47 |
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Specifying sidechain NOE restraints in Relax! by kalabharath » Mon, 2012-12-10 16:44 |
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2,282 |
by kalabharath Mon, 2014-04-21 06:47 |
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Residue variant types and fragments by jadolfbr » Mon, 2013-01-21 09:01 |
2 |
2,454 |
by jadolfbr Mon, 2014-04-21 06:47 |
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"Local sequence-structure compatability" in "design of ideal protein structures" by petrikigor » Sun, 2012-12-02 09:25 |
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2,295 |
by petrikigor Mon, 2014-04-21 06:47 |
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Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
0 |
2,051 |
by coxford Mon, 2014-04-21 06:47 |
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Reading FE from 2PAH by jadolfbr » Tue, 2013-01-29 16:10 |
5 |
4,929 |
by rmoretti Mon, 2014-04-21 06:47 |
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Constraints in Loop Modeling by Julix » Wed, 2012-12-05 07:08 |
11 |
7,919 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to use RotamerDump to access one and two-body energy tables? by msun » Wed, 2013-01-16 12:26 |
3 |
2,303 |
by msun Mon, 2014-04-21 06:47 |
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pNNMAKE compilation by adva » Sun, 2012-12-02 03:59 |
10 |
6,303 |
by smlewis Mon, 2014-04-21 06:47 |
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Can I use the relax mode application for removing clashes in a membrane protein homology model? by doranhen » Thu, 2012-12-20 05:45 |
2 |
2,201 |
by doranhen Mon, 2014-04-21 06:47 |
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memory issue rosetta3.4 scripts by ast » Mon, 2013-01-28 06:25 |
8 |
7,389 |
by smlewis Mon, 2014-04-21 06:47 |
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Solving van der waals clashes in a transmembrane protein model with rosetta by doranhen » Wed, 2012-12-05 00:12 |
3 |
2,807 |
by smlewis Mon, 2014-04-21 06:47 |
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computer specifications by rlwoltz » Tue, 2012-10-09 16:11 |
4 |
4,332 |
by rlwoltz Mon, 2014-04-21 06:47 |
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mitochondria protein modeling by rlwoltz » Fri, 2012-10-26 14:32 |
6 |
5,178 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR - PDB's with occupancy field equal '1.0' by khanhbinh » Sun, 2012-09-23 09:38 |
1 |
1,718 |
by rmoretti Mon, 2014-04-21 06:47 |
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AtomTree::torsion_angle() can't find dof! in match and enzdes by petrikigor » Fri, 2012-10-19 09:49 |
1 |
1,912 |
by rmoretti Mon, 2014-04-21 06:47 |
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loop design by varma » Sun, 2012-11-04 21:25 |
2 |
2,852 |
by varma Mon, 2014-04-21 06:47 |
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ddG backbone movement by dave » Wed, 2012-10-03 03:23 |
2 |
2,291 |
by dave Mon, 2014-04-21 06:47 |
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Can't make NCAA's and D-aminoacids work by jarek » Fri, 2012-10-26 09:10 |
26 |
17,534 |
by rmoretti Mon, 2014-04-21 06:47 |
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Random seed confusion by pardave » Mon, 2012-11-12 09:45 |
4 |
3,497 |
by pardave Mon, 2014-04-21 06:47 |
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Unknow atom_name: LYS 1HZ in enzdes after match by petrikigor » Fri, 2012-10-19 09:35 |
1 |
2,745 |
by rmoretti Mon, 2014-04-21 06:47 |
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Homology Model gives output - but completely wrong! by Julix » Wed, 2012-10-31 10:10 |
1 |
2,748 |
by rmoretti Mon, 2014-04-21 06:47 |
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Identical decoys by aroop » Tue, 2012-09-25 12:50 |
4 |
3,467 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released! by xujc » Wed, 2012-10-24 11:15 |
0 |
3,709 |
by xujc Mon, 2014-04-21 06:47 |
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Question regarding buried or exposed residues by qlj » Fri, 2012-11-09 23:43 |
5 |
5,031 |
by qlj Mon, 2014-04-21 06:47 |
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Symmetric Processing for evaluating side-chain of chi angle by qlj » Wed, 2012-10-10 04:08 |
2 |
2,158 |
by smlewis Mon, 2014-04-21 06:47 |
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an old question by albumns » Sun, 2012-10-28 12:14 |
4 |
3,457 |
by rmoretti Mon, 2014-04-21 06:47 |
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