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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
0
7,620 by admin
Fri, 2015-09-04 16:17
Normal topic ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease
by cossio » Thu, 2015-09-03 08:46
1
2,132 by rmoretti
Fri, 2015-09-04 10:25
Normal topic How to run simulations with non-canonical amino acids?
by Denise » Thu, 2017-06-08 07:50
4
2,494 by Denise
Thu, 2017-06-15 04:26
Normal topic Unsatisfied interface H-bond in Ligand docking
by Prasanth Kumar » Thu, 2013-07-18 12:04
1
3,340 by rmoretti
Mon, 2014-04-21 06:48
Normal topic "Angle constraint: 0-length bonds" error
by purvi24 » Sun, 2019-07-28 10:09
1
762 by rmoretti
Mon, 2019-08-26 12:49
Normal topic "core.kinematics.FoldTree" error upon running RAbD
by Sunyp_IM » Fri, 2020-06-26 17:27
2
731 by Sunyp_IM
Fri, 2020-06-26 20:57
Normal topic "ddg_monomer.linuxgccrelease" by following "High Resolution Protocol"
by lanselibai » Wed, 2014-10-01 09:54
7
8,135 by lanselibai
Sat, 2015-01-03 08:18
Normal topic "Install_dependencies.pl" gives "Aborted" when downloading "nr" database?
by Danielsebas » Sat, 2019-09-14 08:53
3
999 by danpf
Mon, 2019-09-16 09:51
Normal topic "install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage
by Corvin » Thu, 2019-10-10 02:20
1
714 by danpf
Thu, 2019-10-10 09:55
Normal topic "make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7"
by Danielsebas » Mon, 2019-09-02 08:14
2
982 by Danielsebas
Sun, 2019-09-08 02:08
Normal topic "Make_fragments.pl" can't connect to dependencies links
by Corvin » Wed, 2019-09-04 23:54
2
1,098 by Corvin
Thu, 2019-10-10 01:12
Normal topic "OSError: [Errno 2]” in “clustering.py”
by lanselibai » Sat, 2014-10-11 14:30
4
5,912 by lanselibai
Fri, 2014-10-17 05:10
Normal topic "Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application
by xfliu » Thu, 2012-06-21 09:07
4
3,685 by smlewis
Mon, 2014-04-21 06:47
Normal topic "Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease
by Sunyp_IM » Thu, 2020-06-04 05:53
0
346 by Sunyp_IM
Thu, 2020-06-04 05:54
Normal topic "score vs RMSD plots" & "cluster models"
by lanselibai » Thu, 2014-09-25 06:51
12
17,675 by lanselibai
Wed, 2014-10-15 01:54
Normal topic "Segmentation fault" for "minirosetta.linuxgccrelease"
by lanselibai » Tue, 2014-11-04 03:17
1
2,067 by rmoretti
Tue, 2014-11-04 08:53
Normal topic "sparks failed" error when running "make_fragments.pl"?
by Danielsebas » Tue, 2019-09-03 03:43
6
1,983 by Jacob_Verburgt
Tue, 2020-03-10 14:39
Normal topic 'standard.wts' does not exist
by almeida85 » Mon, 2020-09-14 02:26
1
446 by rmoretti
Mon, 2020-09-14 06:36
Normal topic -kill_hairpin error
by jadolfbr » Wed, 2011-10-05 18:53
11
12,345 by rmoretti
Mon, 2015-09-28 15:00
Normal topic -loops:fa_input not found in command line top-level context
by swarekwood » Thu, 2017-08-24 03:15
2
1,532 by swarekwood
Fri, 2017-08-25 05:08
Normal topic -score_app:linmin flag not working
by fglaser » Tue, 2011-03-01 06:04
5
3,847 by smlewis
Mon, 2014-04-21 06:47
Normal topic /database folder after running "install_dependencies.pl" size 657 GB?
by Danielsebas » Tue, 2019-09-03 03:32
1
611 by danpf
Tue, 2019-09-03 10:15
Normal topic A problem with "make_fragments.pl" script dependencies
by Corvin » Fri, 2019-08-16 04:30
2
1,227 by Corvin
Tue, 2019-08-27 00:46
Normal topic A problem with "molfile_to_params.py"
by Rosettasz » Mon, 2013-08-19 19:35
10
7,756 by egecav
Mon, 2021-01-18 05:41
Hot topic A problem with RosettaLigand
by Rosettasz » Fri, 2013-07-19 16:09
16
14,077 by Rosettasz
Mon, 2014-04-21 06:48
Normal topic a question about ligand docking
by yzhou » Wed, 2012-05-30 18:57
5
3,233 by yzhou
Mon, 2014-04-21 06:47
Normal topic A question on the logic of enzyme design
by agulsevin » Thu, 2013-06-13 08:10
2
3,047 by agulsevin
Mon, 2014-04-21 06:48
Hot topic a trouble during floppytail modeling
by chenchaozhao » Tue, 2011-03-15 03:59
39
27,045 by smlewis
Thu, 2017-06-01 10:02
Normal topic ab initio
by malkeet.singh » Thu, 2018-05-10 05:34
3
2,135 by malkeet.singh
Mon, 2018-05-21 04:26
Normal topic Ab Initio folding with HEM ligand molecule
by jseco » Fri, 2021-03-05 06:49
0
205 by jseco
Mon, 2021-03-08 03:40
Normal topic ab initio membrane error (frag9 file...)
by almeida » Mon, 2012-07-30 08:53
9
6,928 by rmoretti
Tue, 2014-08-12 08:15
Normal topic ab initio modelling - what to do next?
by krlitros87 » Thu, 2014-10-16 13:05
2
2,427 by krlitros87
Wed, 2014-10-22 09:31
Normal topic ab initio protein prediction using homologs
by justin » Mon, 2012-02-13 07:52
5
4,036 by justin
Mon, 2014-04-21 06:47
Hot topic Ab initio with multiple metal ions
by cheyuk » Sun, 2013-12-29 17:58
19
14,990 by masterofpuppets
Tue, 2015-01-27 04:26
Normal topic ab inito memberane(error in alignblast.pl)
by kingljy » Tue, 2011-05-03 23:41
6
5,294 by karthishanmugam
Mon, 2014-04-21 06:47
Normal topic Ab-initio modeling on part of the protein
by xiayanlawrence » Thu, 2013-12-19 07:45
1
2,764 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Ab-initio peptide-protein docking
by suhail » Sun, 2013-06-23 16:20
9
9,091 by rmoretti
Fri, 2016-04-29 08:57
Normal topic Abinitio (3.4) Error: no fragment to compute secondary structure
by skovacs » Tue, 2012-09-18 13:49
6
5,384 by skovacs
Mon, 2014-04-21 06:47
Normal topic Abinitio doesn't run but does not give output or error
by Irving » Fri, 2016-10-28 10:04
6
3,803 by rmoretti
Mon, 2017-01-23 08:52
Normal topic Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9
by rlwoltz » Tue, 2012-09-18 14:04
11
11,771 by RAGHURAMAN
Fri, 2014-08-08 02:19
Normal topic Abinitio error: std::out_of_range: basic_string
by Harley Worthy » Tue, 2017-10-31 15:20
1
1,361 by Harley Worthy
Thu, 2017-11-02 08:53
Normal topic Abinitio protocol and X-Ray diffraction data
by allan.ferrari » Wed, 2015-08-12 12:49
2
2,017 by allan.ferrari
Fri, 2015-08-28 12:07
Normal topic Abinitio Relax Error from -kill_hairpins
by attesor » Tue, 2014-10-28 05:33
7
5,373 by rmoretti
Tue, 2014-11-04 10:28
Normal topic Abinitio the Broker protocol
by ac.research » Sun, 2019-03-24 03:56
1
779 by rmoretti
Fri, 2019-04-05 00:18
Normal topic Abinitio.relax problem on centos
by krlitros87 » Wed, 2014-09-24 11:27
4
4,367 by jadolfbr
Tue, 2014-10-07 16:05
Normal topic AbinitioRelax - Error with flags
by jmschu » Wed, 2018-11-21 17:36
1
1,230 by rmoretti
Fri, 2018-11-23 07:59
Normal topic AbinitioRelax detect_disulf_tolerance
by aarono » Tue, 2020-06-02 00:13
0
474 by aarono
Tue, 2020-06-02 00:13
Normal topic AbinitioRelax Disulfide Bonds are not being retained
by brspurri » Wed, 2011-09-28 13:55
1
3,486 by parmef
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax usage (3.4)
by atruong » Fri, 2012-10-12 13:38
12
7,738 by atruong
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax with native fragments
by ks » Mon, 2016-09-05 03:03
5
3,626 by ks
Mon, 2016-09-12 03:14
Normal topic Abinito for Multimers
by Prasanth Kumar » Wed, 2014-01-22 17:45
2
2,509 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic About loophash and batchrelax.
by Run » Mon, 2013-07-22 23:54
14
9,271 by Run
Mon, 2014-04-21 06:48
Normal topic About scorefunction.
by Run » Mon, 2013-09-09 23:08
7
5,263 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Abrelax - Dunbrack02.lib.bin missing
by omirus » Sun, 2011-09-18 06:30
3
3,783 by smlewis
Mon, 2014-04-21 06:47
Normal topic Add missing residues in loop modeling
by exchhattu » Thu, 2013-06-20 17:38
1
2,838 by smlewis
Mon, 2014-04-21 06:48
Normal topic AddHelixSequenceConstraints Mover
by Negarsardar » Thu, 2019-05-30 03:17
2
888 by vmulligan
Thu, 2019-06-13 14:59
Normal topic AddHelixSequenceConstraints Mover2
by Negarsardar » Sat, 2019-06-01 01:54
1
700 by vmulligan
Thu, 2019-06-13 15:01
Normal topic Adding 'virtual' residues for N- and C-terminal optimisation
by Derek Smith » Thu, 2014-08-14 23:18
1
1,634 by jadolfbr
Fri, 2014-10-31 09:00
Normal topic Adding bridged water interaction in constraint file
by purvi24 » Thu, 2019-02-28 07:01
8
2,644 by purvi24
Mon, 2019-03-11 06:43
Normal topic Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo
by zharmad » Fri, 2019-08-23 01:16
1
620 by everyday847
Fri, 2019-08-23 04:08
Normal topic Adding water interactions when docking a ligand with Rosetta 3.7.
by brspurri » Thu, 2017-06-01 09:37
2
2,127 by brspurri
Thu, 2017-06-01 10:58
Normal topic Alanine Scanning
by gjbartlett » Mon, 2013-08-05 07:02
1
2,810 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Alanine Scanning for 1 Protein (no interface)
by mags33 » Fri, 2019-10-25 10:08
2
1,161 by mags33
Wed, 2019-11-06 09:35
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
0
948 by yigallah
Mon, 2014-12-15 08:46
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
2,069 by rmoretti
Thu, 2017-08-24 11:00
Normal topic Altering substrate specificity
by bp » Thu, 2016-12-22 02:45
2
1,686 by bp
Thu, 2016-12-22 07:54
Normal topic ambiguous constraints
by shrutikhare » Mon, 2014-05-12 04:42
1
2,511 by rmoretti
Mon, 2014-05-12 08:25
Normal topic An error with score app
by Genta » Tue, 2019-10-29 18:46
0
551 by Genta
Tue, 2019-10-29 18:46
Normal topic analysis of clustering
by loris.moretti » Thu, 2012-04-19 02:52
3
5,667 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Antibody Docking application
by Maryam_tabasinezhad » Sat, 2015-09-05 09:58
1
1,680 by jadolfbr
Wed, 2015-09-09 12:35
Normal topic antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages
by AlfredoKCL » Sun, 2021-02-28 16:42
2
349 by AlfredoKCL
Mon, 2021-03-01 04:07
Normal topic Antibody modeling
by Maryam_tabasinezhad » Fri, 2015-09-04 11:00
4
3,633 by rmoretti
Wed, 2015-09-09 12:08
Normal topic antibody modeling error
by mxp » Mon, 2019-09-16 18:29
2
942 by mxp
Mon, 2019-09-23 01:40
Normal topic Antibody Modelling
by luicui » Mon, 2017-01-23 21:30
1
1,478 by smlewis
Mon, 2017-02-06 20:46
Normal topic antibody protocol fails
by hamedkhakzad » Mon, 2019-08-19 07:43
1
663 by smlewis
Tue, 2019-10-22 09:45
Normal topic Antibody protocol: unusual antibodies, and chainbreaks
by Cyril Cros » Mon, 2014-07-21 17:03
5
4,463 by Cyril Cros
Tue, 2014-11-25 08:21
Normal topic antibody.linuxgccrelease- output models don't have the same sequence as the input fasta
by agctomer » Thu, 2021-01-21 15:35
4
634 by agctomer
Sun, 2021-01-31 01:06
Normal topic antibody.mpi.linuxgccrelease some antibodies failing to model
by drewaight » Mon, 2020-11-02 17:07
0
398 by drewaight
Mon, 2020-11-02 17:07
Normal topic antibody_numbering_converter cannot recognize the IMGT scheme
by cryosky » Sat, 2020-02-29 23:12
4
1,224 by jadolfbr
Sun, 2020-03-01 14:54
Normal topic Any backrub expert?
by johnnytam100 » Fri, 2019-03-01 01:58
4
1,823 by johnnytam100
Sun, 2019-03-03 23:42
Normal topic Any progress on getting intermediate structures during a design?
by broomsday » Mon, 2020-03-16 06:46
2
775 by vmulligan
Tue, 2020-03-17 11:35
Normal topic application for affinity optimization
by wentlewi » Fri, 2020-03-13 03:24
0
464 by wentlewi
Fri, 2020-03-13 03:24
Normal topic appropriate sampling for protein docking to a multi chain assembly
by SWM » Fri, 2020-01-24 11:22
0
363 by SWM
Fri, 2020-01-24 11:22
Normal topic ArchiveManager -- spinning down
by Marius1987 » Fri, 2016-12-23 03:10
1
1,196 by smlewis
Fri, 2016-12-23 07:04
Normal topic assymetric dymer modelling with comparative and ab initio
by marcia » Mon, 2013-10-14 08:33
3
3,758 by rmoretti
Mon, 2014-04-21 06:48
Normal topic autoNOE peak lists
by aep » Thu, 2015-08-06 06:15
1
1,467 by sgourn
Tue, 2015-08-18 18:25
Normal topic auto_setup_metals flag with loop modeling application fails
by beowulfey » Wed, 2015-06-10 07:44
3
2,933 by beowulfey
Tue, 2015-06-23 16:10
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
0
760 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic Backrub Params Files
by protos_heis » Tue, 2012-09-18 06:15
4
3,798 by protos_heis
Mon, 2014-04-21 06:47
Normal topic Behavior of nstruct
by johnnytam100 » Wed, 2019-05-15 22:22
3
1,550 by johnnytam100
Tue, 2019-05-21 20:48
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
0
1,749 by fred
Mon, 2014-04-21 06:47
Normal topic Binding energy contribution broken down by residue
by brspurri » Tue, 2013-07-23 12:47
1
2,119 by rmoretti
Mon, 2014-04-21 06:48
Normal topic blast database error
by jessye » Sun, 2017-12-03 23:59
1
1,079 by smlewis
Mon, 2017-12-04 12:18
Normal topic Blast error for rosetta antibody: No argument value given for Query file
by dngusdnr1 » Tue, 2021-06-08 17:30
1
150 by taylorjones
Wed, 2021-06-09 16:38
Normal topic broker domain insertion
by dhirajks » Sun, 2018-05-06 12:55
1
881 by rmoretti
Fri, 2018-05-18 12:28
Normal topic Bug Report - Encoding issue
by daniloboskovic » Tue, 2020-08-04 07:02
0
268 by daniloboskovic
Tue, 2020-08-04 07:02
Normal topic BUG REPORT: Remodel Resfile ERROR: LEU was added more than once?
by daniloboskovic » Wed, 2020-04-29 01:17
2
735 by daniloboskovic
Wed, 2020-04-29 05:51
Normal topic Building loop extensions in a membrane protein with Remodel
by benhardy » Tue, 2020-06-02 08:21
2
944 by benhardy
Sun, 2020-09-20 11:15
Normal topic BuildPeptide - Using Phosphorylated and Sulfated Tyrosine
by jlawrie » Thu, 2020-09-03 14:29
1
541 by cryosky
Mon, 2021-03-01 21:37
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
1
1,123 by rmoretti
Fri, 2018-08-03 08:26

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