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Rosetta 3 - Applications
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Interesting scoring performance in flexpepdock against random peptides by ziqi1234 » Fri, 2017-12-08 07:52 |
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1,176 |
by ziqi1234 Fri, 2017-12-08 07:52 |
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An error with score app by Genta » Tue, 2019-10-29 18:46 |
0 |
8,244 |
by Genta Tue, 2019-10-29 18:46 |
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Fragment library (vall file) from Robetta? by alex » Sun, 2017-02-19 08:12 |
0 |
1,667 |
by alex Sun, 2017-02-19 08:12 |
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using piper-flexpepdock by syntekabio2019 » Thu, 2019-12-12 01:22 |
0 |
1,335 |
by syntekabio2019 Thu, 2019-12-12 01:22 |
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Ab Initio folding with HEM ligand molecule by jseco » Fri, 2021-03-05 06:49 |
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794 |
by jseco Mon, 2021-03-08 03:40 |
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Dimeric interface redesign by kjs1728 » Mon, 2022-05-02 21:57 |
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883 |
by kjs1728 Mon, 2022-05-02 21:57 |
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Match: Outputs with 0 hits for cst and clashes with sidechains by uka147 » Wed, 2023-11-08 06:11 |
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265 |
by uka147 Thu, 2023-11-09 01:36 |
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SecundaryStructure Filter by Soler » Sun, 2021-11-21 22:20 |
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862 |
by Soler Sun, 2021-11-21 22:20 |
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how to control alignment for energy_based_clustering by xfradera » Tue, 2023-02-28 10:13 |
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1,859 |
by xfradera Tue, 2023-02-28 10:13 |
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Rosetta remodel - including an RNA ligand by daniloboskovic » Fri, 2020-04-10 04:24 |
0 |
1,002 |
by daniloboskovic Fri, 2020-04-10 04:24 |
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csrosetta.org login by jfeuva » Tue, 2014-12-09 14:49 |
0 |
24,433 |
by jfeuva Tue, 2014-12-09 14:49 |
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Zero residues error in docking by cjy318 » Tue, 2020-07-28 19:47 |
0 |
1,128 |
by cjy318 Tue, 2020-07-28 19:47 |
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Params for a stapled helix peptide by e3lm » Thu, 2022-05-26 12:55 |
0 |
904 |
by e3lm Thu, 2022-05-26 12:55 |
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Error when using Remodel on a protein with a chemically bound ligand by Pappmaschee » Wed, 2020-12-16 09:23 |
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1,158 |
by Pappmaschee Wed, 2020-12-16 09:23 |
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simple_cycpep_predict with N-term acetylation by Ken » Fri, 2021-12-17 09:49 |
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965 |
by Ken Fri, 2021-12-17 09:49 |
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dG_separated values comparison by almeida85 » Mon, 2023-04-24 03:34 |
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554 |
by almeida85 Tue, 2023-05-16 01:02 |
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FlexPepDocking by jlawrie » Tue, 2020-09-15 12:52 |
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934 |
by jlawrie Tue, 2020-09-15 12:52 |
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Macrocycle from a C-terminal amidated peptide by almeida85 » Thu, 2022-08-18 07:53 |
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945 |
by almeida85 Thu, 2022-08-18 07:53 |
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FlexPepDock bug? Constraints do not appear in total_score? by nrollins » Mon, 2021-07-26 14:29 |
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782 |
by nrollins Mon, 2021-07-26 14:29 |
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Ligand Rotamer Control in Macther by Hirbond » Tue, 2022-10-25 13:01 |
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1,751 |
by Hirbond Wed, 2022-10-26 12:57 |
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Secondary Matching build_sets Error by enmirts » Wed, 2018-03-28 10:33 |
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1,136 |
by enmirts Wed, 2018-03-28 10:34 |
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multi ligand docking using rosetta script by syntekabio2019 » Tue, 2021-04-13 19:31 |
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823 |
by syntekabio2019 Tue, 2021-04-13 19:31 |
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Per residue total score by johnnytam100 » Wed, 2022-07-13 21:57 |
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784 |
by johnnytam100 Wed, 2022-07-13 21:57 |
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rosetta remodel and designing helix extension by dhirajks » Thu, 2018-12-13 19:34 |
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1,215 |
by dhirajks Thu, 2018-12-13 19:34 |
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constraints in Rosetta ligand docking (AddorRemoveMatchCsts, Addconstraints Mover, and ConstraintSetMover) by rohi » Mon, 2021-01-11 13:32 |
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1,036 |
by rohi Mon, 2021-01-11 13:58 |
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Can anybody suggests some flags to run Rifdock? by Hyunmi Song » Sun, 2022-01-23 16:45 |
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1,301 |
by Hyunmi Song Sun, 2022-01-23 16:45 |
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Symmetry definition file versions by Jeff Qu » Tue, 2021-09-28 09:53 |
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786 |
by Jeff Qu Tue, 2021-09-28 09:53 |
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RosettaCM Ignoring Ligand by Delfosse57 » Sun, 2022-12-04 12:05 |
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3,968 |
by Delfosse57 Sun, 2022-12-04 12:05 |
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FloppyTail as a rosettascripts file by tiagogomes89 » Mon, 2015-01-19 02:45 |
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1,437 |
by tiagogomes89 Mon, 2015-01-19 02:45 |
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Fewer than expected structures in clustering output by fabiotrovato » Thu, 2020-08-20 00:59 |
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841 |
by fabiotrovato Thu, 2020-08-20 00:59 |
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Benchmarking Rosetta DDG Methods by sareeves96 » Fri, 2022-07-29 09:55 |
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952 |
by sareeves96 Fri, 2022-07-29 09:55 |
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Creation of crystal_complex.pdb for docking by HBenson » Mon, 2024-03-11 08:57 |
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155 |
by HBenson Mon, 2024-03-11 08:57 |
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Folding and Docking using Symmetry by danielles » Wed, 2012-09-12 11:32 |
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1,901 |
by danielles Mon, 2014-04-21 06:47 |
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Ligand docking with constraint by Alison_Yajie » Wed, 2020-06-24 12:34 |
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876 |
by Alison_Yajie Wed, 2020-06-24 12:34 |
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Question with rosetta AbPredict tutorial by terabithia2011 » Mon, 2021-01-25 09:24 |
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837 |
by terabithia2011 Mon, 2021-01-25 09:24 |
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Rosetta Matcher not recognizing protonation forms of CST files like CYZ, HIS_D, etc by Hirbond » Tue, 2022-03-01 13:16 |
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1,081 |
by Hirbond Tue, 2022-03-01 13:16 |
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Does antibody_numbering_converter support camelid antibody? by mxp » Tue, 2020-07-07 01:21 |
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908 |
by mxp Tue, 2020-07-07 01:21 |
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problem in using "zinc_site_redesign" tool by Isomerase » Mon, 2022-03-28 01:19 |
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773 |
by Isomerase Mon, 2022-03-28 01:19 |
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The problems on pdb renumbering by Sunyp_IM » Sun, 2017-08-20 06:39 |
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2,238 |
by Sunyp_IM Sun, 2017-08-20 06:39 |
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Comparing a prediction to the native structure and calculate RMSD for RNA by danwolf_33 » Thu, 2023-02-09 09:32 |
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1,937 |
by danwolf_33 Thu, 2023-02-09 09:34 |
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application for affinity optimization by wentlewi » Fri, 2020-03-13 03:24 |
0 |
1,010 |
by wentlewi Fri, 2020-03-13 03:24 |
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FastRelax Refinement severe clashes by Victor Tobiasson » Thu, 2021-05-20 06:55 |
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833 |
by Victor Tobiasson Thu, 2021-05-20 06:55 |
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How many iterations of remodel is enough? by daniloboskovic » Thu, 2020-07-16 08:07 |
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850 |
by daniloboskovic Thu, 2020-07-16 08:14 |
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membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template? by fglaser » Thu, 2011-04-07 07:57 |
0 |
2,289 |
by fglaser Mon, 2014-04-21 06:47 |
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extract docking pose from ligand docking silent file by Ruska322 » Sat, 2019-09-07 05:21 |
0 |
1,031 |
by Ruska322 Sat, 2019-09-07 05:21 |
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How to apply cartesian_ddg to multi-metric enzyme? by Wang Zhe » Wed, 2021-12-08 10:07 |
0 |
967 |
by Wang Zhe Wed, 2021-12-08 10:07 |
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Protein Protein Docking with Linker by mrinal » Mon, 2023-03-20 15:58 |
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813 |
by mrinal Mon, 2023-03-20 15:58 |
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Urgent issue: Error with submitting a new Rosetta-Vienna RNP-ddG job by eyaaaan » Sun, 2022-08-07 22:03 |
0 |
913 |
by eyaaaan Tue, 2022-08-09 21:59 |
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Model GFP chromophore(cro) using NCAA or NC backbone method? by lei » Thu, 2024-04-04 06:23 |
0 |
74 |
by lei Thu, 2024-04-04 06:23 |
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PDB Clustering by code_Monkey » Mon, 2021-04-05 10:40 |
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783 |
by code_Monkey Mon, 2021-04-05 10:40 |
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backrub application, resfile, and pivot_residues by tylerborrman » Tue, 2016-12-06 14:46 |
0 |
1,307 |
by tylerborrman Tue, 2016-12-06 14:46 |
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Dock two domains using topology broker by sn » Thu, 2017-10-05 17:07 |
0 |
1,154 |
by sn Thu, 2017-10-05 17:07 |
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"Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-06-04 05:53 |
0 |
900 |
by Sunyp_IM Thu, 2020-06-04 05:54 |
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Protein design: Ligand binding between two units of a homodimer by chemotaxis_123 » Sun, 2022-01-02 16:01 |
0 |
932 |
by chemotaxis_123 Sun, 2022-01-02 16:01 |
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RNP structure prediction flags by daniloboskovic » Fri, 2019-08-16 11:10 |
0 |
985 |
by daniloboskovic Fri, 2019-08-16 11:17 |
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Robetta ab initio - TrRosetta for membrane proteins by benhardy » Wed, 2020-09-30 08:42 |
0 |
1,374 |
by benhardy Wed, 2020-09-30 08:42 |
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Topobuilder segmentation fault by tatsiana.bylund » Mon, 2021-08-09 07:10 |
0 |
1,249 |
by tatsiana.bylund Mon, 2021-08-09 07:10 |
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Help to understand docking results by rtorquato » Fri, 2022-11-25 12:05 |
0 |
1,511 |
by rtorquato Fri, 2022-11-25 12:05 |
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FlexPepDock Multi chain receptor by evo_umich » Mon, 2018-04-02 12:13 |
0 |
1,253 |
by evo_umich Mon, 2018-04-02 12:13 |
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Error with RNA_denovo by zmfowler » Thu, 2022-07-14 05:34 |
0 |
836 |
by zmfowler Thu, 2022-07-14 05:34 |
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Pepspec options by shaunmk » Mon, 2015-04-27 02:33 |
0 |
1,682 |
by shaunmk Mon, 2015-04-27 02:33 |
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Linker Building in scFv by sam_dc » Sat, 2021-10-09 05:38 |
0 |
816 |
by sam_dc Sat, 2021-10-09 05:38 |
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RosettaAntibody3 - How can I model an extended H3? by brspurri » Fri, 2020-08-28 09:11 |
0 |
881 |
by brspurri Fri, 2020-08-28 09:11 |
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Scoring after HBNet by HHL_SIUC » Wed, 2020-07-01 10:49 |
0 |
878 |
by HHL_SIUC Wed, 2020-07-01 10:49 |
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help surface_docking peptide on ice by engand93 » Wed, 2019-03-27 02:43 |
0 |
1,015 |
by engand93 Wed, 2019-03-27 02:43 |
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Error with docking_prepack_protocol while executing the tutorial "Docking Flexible Proteins" by vitoralmeida1808 » Mon, 2023-11-06 09:43 |
0 |
254 |
by vitoralmeida1808 Mon, 2023-11-06 09:43 |
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pmut_scan_parallel by G Mustafa » Wed, 2018-10-17 05:41 |
0 |
1,473 |
by G Mustafa Wed, 2018-10-17 05:41 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-05-21 09:42 |
0 |
975 |
by Alison_Yajie Thu, 2020-05-21 09:42 |
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constraining different chains together in rosetta_cm by y_atsmonraz » Thu, 2021-11-18 02:59 |
0 |
849 |
by y_atsmonraz Thu, 2021-11-18 03:01 |
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Finding lowest energy structure among generated structures by Marius1987 » Sun, 2016-04-10 11:38 |
0 |
1,585 |
by Marius1987 Sun, 2016-04-10 12:09 |
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What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001." by Corvin » Thu, 2020-04-02 00:16 |
0 |
1,003 |
by Corvin Thu, 2020-04-02 00:16 |
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RosettaAntibody3 core.pose.util error by linhhoang157 » Tue, 2020-07-28 12:40 |
0 |
1,015 |
by linhhoang157 Tue, 2020-07-28 12:40 |
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IL-2 gets better binding with beta / gamma by tonycheng1688 » Wed, 2022-05-25 10:23 |
0 |
919 |
by tonycheng1688 Wed, 2022-05-25 10:23 |
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Problems with mpi version of antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 23:06 |
0 |
1,117 |
by Sunyp_IM Thu, 2020-05-28 23:07 |
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Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)? by Corvin » Wed, 2020-12-16 04:58 |
0 |
1,093 |
by Corvin Wed, 2020-12-30 09:21 |
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Segfault error while running MR Rosetta in Phenix by memilton » Thu, 2021-12-16 09:09 |
0 |
1,050 |
by memilton Thu, 2021-12-16 09:09 |
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Docking HeparinSulfate to proteins using GlycanDock by GebauerJ » Tue, 2022-08-16 07:44 |
0 |
974 |
by GebauerJ Tue, 2022-08-16 07:44 |
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Helical Symmetry Axis by Sandy » Tue, 2016-05-31 18:48 |
0 |
1,771 |
by Sandy Tue, 2016-05-31 18:48 |
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new BUNS for FunFolDes run by tatsiana.bylund » Wed, 2019-08-14 20:57 |
0 |
1,004 |
by tatsiana.bylund Wed, 2019-08-14 20:57 |
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FlexPepDock ab initio: behavior without fragment files by nrollins » Mon, 2021-07-26 14:16 |
0 |
736 |
by nrollins Mon, 2021-07-26 14:16 |
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Setting pivots points for GenKIC by almeida85 » Tue, 2022-10-25 02:32 |
0 |
1,697 |
by almeida85 Tue, 2022-10-25 02:32 |
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PIPER-FlexPepDock [commercial user] by Skelly » Tue, 2024-01-23 16:14 |
0 |
325 |
by Skelly Tue, 2024-01-30 14:08 |
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Design of multimeric protein by ldlamini » Mon, 2021-01-11 07:23 |
0 |
915 |
by ldlamini Mon, 2021-01-11 07:23 |
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ligand dock into HEM containg pdb by syntekabio2019 » Thu, 2022-01-20 03:05 |
0 |
1,046 |
by syntekabio2019 Thu, 2022-01-20 03:05 |
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non-zero ddG of binding even without mutations by top-gun98 » Wed, 2023-06-07 17:19 |
0 |
429 |
by top-gun98 Wed, 2023-06-07 17:19 |
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Stub Libraries for DockWithHotspotMover by ayush_patel » Sat, 2024-03-09 22:43 |
0 |
131 |
by ayush_patel Sat, 2024-03-09 22:43 |
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Using GlycanDock and the Antibody Affinity Maturation protocol. by tbelec » Mon, 2022-02-28 12:37 |
0 |
1,251 |
by tbelec Mon, 2022-02-28 12:37 |
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How to design the anitgen-antibody interface by Sunyp_IM » Tue, 2017-12-12 18:44 |
0 |
1,242 |
by Sunyp_IM Tue, 2017-12-12 18:44 |
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Symmetry mode in Remodel for N-terminal extension by yvonne.chan2 » Mon, 2019-11-04 13:41 |
0 |
1,269 |
by yvonne.chan2 Mon, 2019-11-04 13:41 |
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zero standard deviation of I_sc in protein-protein docking by rohi » Fri, 2020-07-03 22:19 |
0 |
850 |
by rohi Fri, 2020-07-03 22:20 |
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Segfault with Pepspec by almeida85 » Thu, 2021-02-11 02:56 |
0 |
726 |
by almeida85 Thu, 2021-02-11 02:56 |
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snugdock run error: Sequence for partner1 does not match first member of ensemble1 by pagumaaaaa » Fri, 2022-03-25 01:21 |
0 |
953 |
by pagumaaaaa Fri, 2022-03-25 01:21 |
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Side-chain grafting at the fixed protein and position by Kazu » Wed, 2020-05-20 08:49 |
0 |
834 |
by Kazu Wed, 2020-05-20 08:49 |
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core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by AlfredoKCL » Sat, 2020-11-07 18:21 |
0 |
1,332 |
by AlfredoKCL Sat, 2020-11-07 18:21 |
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prepack - residue count fails by xfradera » Fri, 2023-01-27 06:36 |
0 |
1,220 |
by xfradera Fri, 2023-01-27 06:36 |
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Docking protein complexes when constrained by oligomer symmetry by msk » Tue, 2014-06-03 11:09 |
0 |
1,543 |
by msk Tue, 2014-06-03 11:09 |
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Extracting top score PIPER models by almeida85 » Mon, 2020-08-31 07:17 |
0 |
1,039 |
by almeida85 Mon, 2020-08-31 07:17 |
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Error Implementing Match Style Constraints by pwging13 » Thu, 2019-12-19 09:53 |
0 |
1,023 |
by pwging13 Thu, 2019-12-19 09:53 |
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cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues by ValentinaSora » Sun, 2020-05-24 12:32 |
0 |
1,461 |
by ValentinaSora Sun, 2020-05-24 12:32 |
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core.pose.util: (0) {0} [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by ldx022 » Thu, 2023-03-16 04:13 |
0 |
1,159 |
by ldx022 Thu, 2023-03-16 04:13 |
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