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Rosetta 3 - Applications
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FastRelax Refinement severe clashes by Victor Tobiasson » Thu, 2021-05-20 06:55 |
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349 |
by Victor Tobiasson Thu, 2021-05-20 06:55 |
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Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
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1,488 |
by daniloboskovic Fri, 2019-11-08 08:27 |
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Does antibody_numbering_converter support camelid antibody? by mxp » Tue, 2020-07-07 01:21 |
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476 |
by mxp Tue, 2020-07-07 01:21 |
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problem in using "zinc_site_redesign" tool by Isomerase » Mon, 2022-03-28 01:19 |
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72 |
by Isomerase Mon, 2022-03-28 01:19 |
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How many iterations of remodel is enough? by daniloboskovic » Thu, 2020-07-16 08:07 |
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453 |
by daniloboskovic Thu, 2020-07-16 08:14 |
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extract docking pose from ligand docking silent file by Ruska322 » Sat, 2019-09-07 05:21 |
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660 |
by Ruska322 Sat, 2019-09-07 05:21 |
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How to apply cartesian_ddg to multi-metric enzyme? by Wang Zhe » Wed, 2021-12-08 10:07 |
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179 |
by Wang Zhe Wed, 2021-12-08 10:07 |
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PDB Clustering by code_Monkey » Mon, 2021-04-05 10:40 |
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358 |
by code_Monkey Mon, 2021-04-05 10:40 |
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Can't find RosettaRemodel in Rosetta 3.4 by petrikigor » Mon, 2012-12-03 13:56 |
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1,462 |
by petrikigor Mon, 2014-04-21 06:47 |
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backrub application, resfile, and pivot_residues by tylerborrman » Tue, 2016-12-06 14:46 |
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879 |
by tylerborrman Tue, 2016-12-06 14:46 |
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Dock two domains using topology broker by sn » Thu, 2017-10-05 17:07 |
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772 |
by sn Thu, 2017-10-05 17:07 |
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"Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-06-04 05:53 |
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473 |
by Sunyp_IM Thu, 2020-06-04 05:54 |
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Protein design: Ligand binding between two units of a homodimer by chemotaxis_123 » Sun, 2022-01-02 16:01 |
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169 |
by chemotaxis_123 Sun, 2022-01-02 16:01 |
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FlexPepDock Multi chain receptor by evo_umich » Mon, 2018-04-02 12:13 |
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847 |
by evo_umich Mon, 2018-04-02 12:13 |
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RNP structure prediction flags by daniloboskovic » Fri, 2019-08-16 11:10 |
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634 |
by daniloboskovic Fri, 2019-08-16 11:17 |
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Robetta ab initio - TrRosetta for membrane proteins by benhardy » Wed, 2020-09-30 08:42 |
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861 |
by benhardy Wed, 2020-09-30 08:42 |
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Topobuilder segmentation fault by tatsiana.bylund » Mon, 2021-08-09 07:10 |
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469 |
by tatsiana.bylund Mon, 2021-08-09 07:10 |
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Pepspec options by shaunmk » Mon, 2015-04-27 02:33 |
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1,311 |
by shaunmk Mon, 2015-04-27 02:33 |
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Linker Building in scFv by sam_dc » Sat, 2021-10-09 05:38 |
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228 |
by sam_dc Sat, 2021-10-09 05:38 |
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RosettaAntibody3 - How can I model an extended H3? by brspurri » Fri, 2020-08-28 09:11 |
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479 |
by brspurri Fri, 2020-08-28 09:11 |
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Scoring after HBNet by HHL_SIUC » Wed, 2020-07-01 10:49 |
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460 |
by HHL_SIUC Wed, 2020-07-01 10:49 |
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pmut_scan_parallel by G Mustafa » Wed, 2018-10-17 05:41 |
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939 |
by G Mustafa Wed, 2018-10-17 05:41 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-05-21 09:42 |
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506 |
by Alison_Yajie Thu, 2020-05-21 09:42 |
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constraining different chains together in rosetta_cm by y_atsmonraz » Thu, 2021-11-18 02:59 |
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251 |
by y_atsmonraz Thu, 2021-11-18 03:01 |
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Finding lowest energy structure among generated structures by Marius1987 » Sun, 2016-04-10 11:38 |
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1,204 |
by Marius1987 Sun, 2016-04-10 12:09 |
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What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001." by Corvin » Thu, 2020-04-02 00:16 |
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614 |
by Corvin Thu, 2020-04-02 00:16 |
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help surface_docking peptide on ice by engand93 » Wed, 2019-03-27 02:43 |
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625 |
by engand93 Wed, 2019-03-27 02:43 |
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RosettaAntibody3 core.pose.util error by linhhoang157 » Tue, 2020-07-28 12:40 |
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581 |
by linhhoang157 Tue, 2020-07-28 12:40 |
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Problems with mpi version of antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 23:06 |
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607 |
by Sunyp_IM Thu, 2020-05-28 23:07 |
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Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)? by Corvin » Wed, 2020-12-16 04:58 |
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485 |
by Corvin Wed, 2020-12-30 09:21 |
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Segfault error while running MR Rosetta in Phenix by memilton » Thu, 2021-12-16 09:09 |
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205 |
by memilton Thu, 2021-12-16 09:09 |
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Helical Symmetry Axis by Sandy » Tue, 2016-05-31 18:48 |
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1,344 |
by Sandy Tue, 2016-05-31 18:48 |
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Design of multimeric protein by ldlamini » Mon, 2021-01-11 07:23 |
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385 |
by ldlamini Mon, 2021-01-11 07:23 |
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ligand dock into HEM containg pdb by syntekabio2019 » Thu, 2022-01-20 03:05 |
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216 |
by syntekabio2019 Thu, 2022-01-20 03:05 |
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new BUNS for FunFolDes run by tatsiana.bylund » Wed, 2019-08-14 20:57 |
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627 |
by tatsiana.bylund Wed, 2019-08-14 20:57 |
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FlexPepDock ab initio: behavior without fragment files by nrollins » Mon, 2021-07-26 14:16 |
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248 |
by nrollins Mon, 2021-07-26 14:16 |
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membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template? by fglaser » Thu, 2011-04-07 07:57 |
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1,876 |
by fglaser Mon, 2014-04-21 06:47 |
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Using GlycanDock and the Antibody Affinity Maturation protocol. by tbelec » Mon, 2022-02-28 12:37 |
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176 |
by tbelec Mon, 2022-02-28 12:37 |
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Side-chain grafting at the fixed protein and position by Kazu » Wed, 2020-05-20 08:49 |
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435 |
by Kazu Wed, 2020-05-20 08:49 |
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core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by AlfredoKCL » Sat, 2020-11-07 18:21 |
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647 |
by AlfredoKCL Sat, 2020-11-07 18:21 |
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Docking protein complexes when constrained by oligomer symmetry by msk » Tue, 2014-06-03 11:09 |
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1,173 |
by msk Tue, 2014-06-03 11:09 |
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Extracting top score PIPER models by almeida85 » Mon, 2020-08-31 07:17 |
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543 |
by almeida85 Mon, 2020-08-31 07:17 |
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How to design the anitgen-antibody interface by Sunyp_IM » Tue, 2017-12-12 18:44 |
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870 |
by Sunyp_IM Tue, 2017-12-12 18:44 |
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Symmetry mode in Remodel for N-terminal extension by yvonne.chan2 » Mon, 2019-11-04 13:41 |
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756 |
by yvonne.chan2 Mon, 2019-11-04 13:41 |
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zero standard deviation of I_sc in protein-protein docking by rohi » Fri, 2020-07-03 22:19 |
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434 |
by rohi Fri, 2020-07-03 22:20 |
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Segfault with Pepspec by almeida85 » Thu, 2021-02-11 02:56 |
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344 |
by almeida85 Thu, 2021-02-11 02:56 |
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snugdock run error: Sequence for partner1 does not match first member of ensemble1 by pagumaaaaa » Fri, 2022-03-25 01:21 |
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77 |
by pagumaaaaa Fri, 2022-03-25 01:21 |
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Error Implementing Match Style Constraints by pwging13 » Thu, 2019-12-19 09:53 |
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608 |
by pwging13 Thu, 2019-12-19 09:53 |
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cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues by ValentinaSora » Sun, 2020-05-24 12:32 |
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664 |
by ValentinaSora Sun, 2020-05-24 12:32 |
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Symmetric assembly and output reconstruction by felipet » Wed, 2014-07-02 10:23 |
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1,078 |
by felipet Wed, 2014-07-02 10:23 |
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algebric library for rosetta by yigallah » Mon, 2014-12-15 08:46 |
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1,053 |
by yigallah Mon, 2014-12-15 08:46 |
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appropriate sampling for protein docking to a multi chain assembly by SWM » Fri, 2020-01-24 11:22 |
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475 |
by SWM Fri, 2020-01-24 11:22 |
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Bug Report - Encoding issue by daniloboskovic » Tue, 2020-08-04 07:02 |
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385 |
by daniloboskovic Tue, 2020-08-04 07:02 |
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Weighted scores?? by sizhang » Wed, 2018-12-05 15:22 |
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650 |
by sizhang Wed, 2018-12-05 15:22 |
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flexpepdcok of lipid conjugated peptide with glyco protein. by ravi.thakkkar369 » Fri, 2020-12-18 13:00 |
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371 |
by ravi.thakkkar369 Fri, 2020-12-18 13:00 |
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DNA-protein docking by ksteczk » Sat, 2020-04-11 11:23 |
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775 |
by ksteczk Sat, 2020-04-11 11:23 |
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Pepspec Anchor Dock by Soler » Wed, 2020-09-16 19:08 |
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402 |
by Soler Wed, 2020-09-16 19:08 |
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Repacker vs minimization by Elijah_Hix » Fri, 2021-07-02 07:25 |
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251 |
by Elijah_Hix Fri, 2021-07-02 07:25 |
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ddg_monomer: if MPI executable is reproducible and efficient? by lanselibai » Sun, 2015-01-11 09:48 |
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1,278 |
by lanselibai Sun, 2015-01-11 10:50 |
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Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Mon, 2016-01-04 11:26 |
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1,172 |
by achambe Mon, 2016-01-04 11:26 |
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RosettaCM by jlawrie » Fri, 2020-08-14 14:09 |
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822 |
by jlawrie Fri, 2020-08-14 14:09 |
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fragment_picker bug by David Hoover » Wed, 2012-02-29 11:43 |
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1,455 |
by David Hoover Mon, 2014-04-21 06:47 |
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PlaceStub filter by a-eatemadi@razi... » Wed, 2017-11-15 04:19 |
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970 |
by a-eatemadi@razi... Mon, 2017-12-04 23:52 |
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Residue selector by Alison_Yajie » Wed, 2020-06-17 19:57 |
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464 |
by Alison_Yajie Thu, 2020-06-18 09:47 |
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FastRelaxMover parameters for antibody-antigen interaction analysis by samuel_k » Thu, 2022-01-27 01:08 |
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236 |
by samuel_k Thu, 2022-01-27 01:08 |
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NCAA Rotamers for Cyclosporin by marinok » Mon, 2020-09-28 14:11 |
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559 |
by marinok Mon, 2020-09-28 14:11 |
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Ligand creation by Prasanth Kumar » Fri, 2013-08-02 09:48 |
1 |
2,024 |
by rmoretti Mon, 2014-04-21 06:48 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
1 |
2,156 |
by rmoretti Mon, 2014-05-12 15:08 |
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radius of gyration as constrain by dhirajks » Sat, 2018-05-05 23:00 |
1 |
1,193 |
by smlewis Mon, 2018-05-07 11:42 |
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Antibody Modelling by luicui » Mon, 2017-01-23 21:30 |
1 |
1,707 |
by smlewis Mon, 2017-02-06 20:46 |
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blast database error by jessye » Sun, 2017-12-03 23:59 |
1 |
1,263 |
by smlewis Mon, 2017-12-04 12:18 |
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Comparative modeling by MRH » Mon, 2013-08-19 23:08 |
1 |
2,026 |
by smlewis Mon, 2014-04-21 06:48 |
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SymDock with constraints by felipet » Thu, 2015-05-14 09:01 |
1 |
2,537 |
by rmoretti Mon, 2015-05-25 11:49 |
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Predicting the part of protein strcutrue by ksy141 » Tue, 2018-10-16 11:47 |
1 |
972 |
by jadolfbr Fri, 2018-11-09 14:28 |
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/database folder after running "install_dependencies.pl" size 657 GB? by Danielsebas » Tue, 2019-09-03 03:32 |
1 |
827 |
by danpf Tue, 2019-09-03 10:15 |
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Changing rosetta scoring to favour less hydrophobic areas by daniloboskovic » Thu, 2020-05-21 03:03 |
1 |
664 |
by vmulligan Thu, 2020-05-21 18:33 |
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Executing the clean_pdb.py script by Rkfoury » Fri, 2015-02-20 10:16 |
1 |
3,131 |
by lanselibai Tue, 2015-02-24 02:36 |
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Enzyme Design - Score File by nwhoppe » Thu, 2016-04-07 15:11 |
1 |
1,614 |
by rmoretti Fri, 2016-04-08 07:39 |
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Rosetta_cm Partial Threading Removing Parts of Sequence by gszwabowski » Thu, 2019-06-20 12:30 |
1 |
1,068 |
by rmoretti Mon, 2019-06-24 13:43 |
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Comparative modeling using a two chained template for a one chain structure by ahmadkhalifa » Mon, 2017-12-18 11:00 |
1 |
1,086 |
by rmoretti Mon, 2018-01-15 16:14 |
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De novo water predictions using SPaDES by MNP1986 » Mon, 2019-03-25 07:53 |
1 |
1,148 |
by matteoferla Tue, 2020-08-04 09:30 |
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JD2 MPI by jrcf » Wed, 2015-10-28 14:45 |
1 |
1,752 |
by rmoretti Sat, 2015-10-31 08:57 |
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RosettaLigand Docking by Dinesh Kumar » Mon, 2018-01-15 20:54 |
1 |
1,606 |
by rmoretti Tue, 2018-01-16 07:24 |
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is it necessary to always run relax before any Rosetta by mainzer » Fri, 2019-04-12 01:35 |
1 |
1,246 |
by rmoretti Wed, 2019-07-10 09:47 |
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How to freeze ligand during FastRelax? by dnamkr » Thu, 2020-01-02 14:53 |
1 |
987 |
by aloshbau Fri, 2020-01-10 16:48 |
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pepspec anchor dock by Andre Serobian » Tue, 2020-07-28 05:51 |
1 |
673 |
by Andre Serobian Tue, 2020-07-28 23:26 |
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Surface Docking Crash (continued) by dkozuch » Tue, 2017-09-12 06:18 |
1 |
1,161 |
by rmoretti Tue, 2017-10-10 10:08 |
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AbinitioRelax - Error with flags by jmschu » Wed, 2018-11-21 17:36 |
1 |
1,471 |
by rmoretti Fri, 2018-11-23 07:59 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:30 |
1 |
445 |
by taylorjones Wed, 2021-06-09 16:38 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:16 |
1 |
1,493 |
by rmoretti Fri, 2016-06-17 10:24 |
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ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close? by cossio » Fri, 2014-12-26 13:11 |
1 |
1,642 |
by rmoretti Tue, 2015-01-13 07:44 |
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cluster.linuxgccrelease Killed error by samuelrpita » Fri, 2015-11-20 05:56 |
1 |
1,829 |
by rmoretti Tue, 2015-11-24 16:07 |
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loop design for Conformational bias by dhirajks » Thu, 2019-05-09 21:22 |
1 |
1,016 |
by jadolfbr Fri, 2019-05-10 07:53 |
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error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease by xinmiaohe » Thu, 2020-01-30 22:09 |
1 |
1,239 |
by xinmiaohe Fri, 2020-01-31 08:23 |
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rosetta scores for mutated structures by harshkhare » Wed, 2011-11-23 09:30 |
1 |
2,296 |
by rmoretti Mon, 2014-04-21 06:47 |
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profit program in antibody design by tzhou » Tue, 2013-10-15 23:29 |
1 |
2,341 |
by rmoretti Mon, 2014-04-21 06:48 |
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how to generate Fragments using up to 2001 structures only by oppopomoz » Sat, 2015-07-25 00:43 |
1 |
1,582 |
by rmoretti Thu, 2015-08-06 08:57 |
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Can I use rosetta binaries built in one linux system to another linux system? by Danielsebas » Wed, 2019-09-18 06:49 |
1 |
884 |
by rmoretti Wed, 2019-09-18 10:36 |
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[Solved] RosettaAntibody3 - Grafting step is failing to detect H3 from the input sequence by brspurri » Mon, 2021-01-04 16:46 |
1 |
670 |
by brspurri Mon, 2021-01-18 18:14 |
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PDB file name too long to be handled by file system by dave » Thu, 2019-08-08 03:10 |
1 |
797 |
by rmoretti Mon, 2019-08-26 12:17 |
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