You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
What is interface_cutoff_distance? And why did my residues outside this value get designed? by chrisHKL » Fri, 2020-02-28 14:52 |
0 |
903 |
by chrisHKL Fri, 2020-02-28 14:52 |
|
|
clustering output file has few structures by fabiotrovato » Mon, 2020-08-17 11:37 |
0 |
691 |
by fabiotrovato Mon, 2020-08-17 11:37 |
|
|
Domain insertion with Non-CAA by mwfranklin » Mon, 2017-01-16 12:30 |
0 |
1,670 |
by mwfranklin Mon, 2017-01-16 12:30 |
|
|
Segment File Gen - no ouput by CATarr » Wed, 2019-10-09 19:05 |
0 |
839 |
by CATarr Wed, 2019-10-09 19:05 |
|
|
RosettaAntibody - No matching templates for CDR1 by agctomer » Tue, 2021-01-19 22:45 |
0 |
835 |
by agctomer Tue, 2021-01-19 22:45 |
|
|
Generating the 3-mer and 9-mer fragments by Prasoon » Wed, 2022-02-09 09:04 |
0 |
1,050 |
by Prasoon Wed, 2022-02-09 09:04 |
|
|
Memory Leak in FragmentPicker.cxx11thread application by Corvin » Tue, 2023-07-11 06:04 |
0 |
184 |
by Corvin Thu, 2023-07-13 05:30 |
|
|
Interesting scoring performance in flexpepdock against random peptides by ziqi1234 » Fri, 2017-12-08 07:52 |
0 |
1,064 |
by ziqi1234 Fri, 2017-12-08 07:52 |
|
|
An error with score app by Genta » Tue, 2019-10-29 18:46 |
0 |
5,175 |
by Genta Tue, 2019-10-29 18:46 |
|
|
How do I compare the results of InterfaceAnalyzer using different trimers as input? by franz72 » Sun, 2023-08-06 10:10 |
0 |
179 |
by franz72 Sun, 2023-08-06 10:10 |
|
|
antibody.mpi.linuxgccrelease some antibodies failing to model by drewaight » Mon, 2020-11-02 17:07 |
0 |
1,089 |
by drewaight Mon, 2020-11-02 17:07 |
|
|
Rosetta DARc suboptimal dockings by ddhoyo » Mon, 2021-10-11 06:18 |
0 |
615 |
by ddhoyo Mon, 2021-10-11 06:18 |
|
|
Snugdock Error: The sequence position requested was greater than the number of residues by stannowitz » Tue, 2023-01-17 07:37 |
0 |
950 |
by stannowitz Tue, 2023-01-17 23:48 |
|
|
wallpaper symmetry definition file by aaj » Fri, 2016-02-26 08:40 |
0 |
1,355 |
by aaj Fri, 2016-02-26 08:40 |
|
|
pMHC modelling by Roberto » Thu, 2022-08-04 07:11 |
0 |
623 |
by Roberto Thu, 2022-08-04 07:11 |
|
|
Fragment library (vall file) from Robetta? by alex » Sun, 2017-02-19 08:12 |
0 |
1,565 |
by alex Sun, 2017-02-19 08:12 |
|
|
using piper-flexpepdock by syntekabio2019 » Thu, 2019-12-12 01:22 |
0 |
1,176 |
by syntekabio2019 Thu, 2019-12-12 01:22 |
|
|
Ab Initio folding with HEM ligand molecule by jseco » Fri, 2021-03-05 06:49 |
0 |
692 |
by jseco Mon, 2021-03-08 03:40 |
|
|
Dimeric interface redesign by kjs1728 » Mon, 2022-05-02 21:57 |
0 |
759 |
by kjs1728 Mon, 2022-05-02 21:57 |
|
|
Match: Outputs with 0 hits for cst and clashes with sidechains by uka147 » Wed, 2023-11-08 06:11 |
0 |
89 |
by uka147 Thu, 2023-11-09 01:36 |
|
|
SecundaryStructure Filter by Soler » Sun, 2021-11-21 22:20 |
0 |
752 |
by Soler Sun, 2021-11-21 22:20 |
|
|
how to control alignment for energy_based_clustering by xfradera » Tue, 2023-02-28 10:13 |
0 |
1,730 |
by xfradera Tue, 2023-02-28 10:13 |
|
|
Rosetta remodel - including an RNA ligand by daniloboskovic » Fri, 2020-04-10 04:24 |
0 |
910 |
by daniloboskovic Fri, 2020-04-10 04:24 |
|
|
csrosetta.org login by jfeuva » Tue, 2014-12-09 14:49 |
0 |
24,348 |
by jfeuva Tue, 2014-12-09 14:49 |
|
|
Zero residues error in docking by cjy318 » Tue, 2020-07-28 19:47 |
0 |
965 |
by cjy318 Tue, 2020-07-28 19:47 |
|
|
Params for a stapled helix peptide by e3lm » Thu, 2022-05-26 12:55 |
0 |
756 |
by e3lm Thu, 2022-05-26 12:55 |
|
|
Error when using Remodel on a protein with a chemically bound ligand by Pappmaschee » Wed, 2020-12-16 09:23 |
0 |
1,026 |
by Pappmaschee Wed, 2020-12-16 09:23 |
|
|
simple_cycpep_predict with N-term acetylation by Ken » Fri, 2021-12-17 09:49 |
0 |
832 |
by Ken Fri, 2021-12-17 09:49 |
|
|
dG_separated values comparison by almeida85 » Mon, 2023-04-24 03:34 |
0 |
342 |
by almeida85 Tue, 2023-05-16 01:02 |
|
|
FlexPepDocking by jlawrie » Tue, 2020-09-15 12:52 |
0 |
832 |
by jlawrie Tue, 2020-09-15 12:52 |
|
|
Macrocycle from a C-terminal amidated peptide by almeida85 » Thu, 2022-08-18 07:53 |
0 |
771 |
by almeida85 Thu, 2022-08-18 07:53 |
|
|
FlexPepDock bug? Constraints do not appear in total_score? by nrollins » Mon, 2021-07-26 14:29 |
0 |
650 |
by nrollins Mon, 2021-07-26 14:29 |
|
|
Ligand Rotamer Control in Macther by Hirbond » Tue, 2022-10-25 13:01 |
0 |
1,625 |
by Hirbond Wed, 2022-10-26 12:57 |
|
|
Secondary Matching build_sets Error by enmirts » Wed, 2018-03-28 10:33 |
0 |
1,055 |
by enmirts Wed, 2018-03-28 10:34 |
|
|
multi ligand docking using rosetta script by syntekabio2019 » Tue, 2021-04-13 19:31 |
0 |
709 |
by syntekabio2019 Tue, 2021-04-13 19:31 |
|
|
Per residue total score by johnnytam100 » Wed, 2022-07-13 21:57 |
0 |
644 |
by johnnytam100 Wed, 2022-07-13 21:57 |
|
|
rosetta remodel and designing helix extension by dhirajks » Thu, 2018-12-13 19:34 |
0 |
1,118 |
by dhirajks Thu, 2018-12-13 19:34 |
|
|
constraints in Rosetta ligand docking (AddorRemoveMatchCsts, Addconstraints Mover, and ConstraintSetMover) by rohi » Mon, 2021-01-11 13:32 |
0 |
932 |
by rohi Mon, 2021-01-11 13:58 |
|
|
Can anybody suggests some flags to run Rifdock? by Hyunmi Song » Sun, 2022-01-23 16:45 |
0 |
1,119 |
by Hyunmi Song Sun, 2022-01-23 16:45 |
|
|
membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template? by fglaser » Thu, 2011-04-07 07:57 |
0 |
2,200 |
by fglaser Mon, 2014-04-21 06:47 |
|
|
Symmetry definition file versions by Jeff Qu » Tue, 2021-09-28 09:53 |
0 |
676 |
by Jeff Qu Tue, 2021-09-28 09:53 |
|
|
RosettaCM Ignoring Ligand by Delfosse57 » Sun, 2022-12-04 12:05 |
0 |
3,820 |
by Delfosse57 Sun, 2022-12-04 12:05 |
|
|
FloppyTail as a rosettascripts file by tiagogomes89 » Mon, 2015-01-19 02:45 |
0 |
1,353 |
by tiagogomes89 Mon, 2015-01-19 02:45 |
|
|
Fewer than expected structures in clustering output by fabiotrovato » Thu, 2020-08-20 00:59 |
0 |
729 |
by fabiotrovato Thu, 2020-08-20 00:59 |
|
|
Benchmarking Rosetta DDG Methods by sareeves96 » Fri, 2022-07-29 09:55 |
0 |
756 |
by sareeves96 Fri, 2022-07-29 09:55 |
|
|
Ligand docking with constraint by Alison_Yajie » Wed, 2020-06-24 12:34 |
0 |
766 |
by Alison_Yajie Wed, 2020-06-24 12:34 |
|
|
Question with rosetta AbPredict tutorial by terabithia2011 » Mon, 2021-01-25 09:24 |
0 |
720 |
by terabithia2011 Mon, 2021-01-25 09:24 |
|
|
Rosetta Matcher not recognizing protonation forms of CST files like CYZ, HIS_D, etc by Hirbond » Tue, 2022-03-01 13:16 |
0 |
844 |
by Hirbond Tue, 2022-03-01 13:16 |
|
|
Does antibody_numbering_converter support camelid antibody? by mxp » Tue, 2020-07-07 01:21 |
0 |
808 |
by mxp Tue, 2020-07-07 01:21 |
|
|
problem in using "zinc_site_redesign" tool by Isomerase » Mon, 2022-03-28 01:19 |
0 |
657 |
by Isomerase Mon, 2022-03-28 01:19 |
|
|
The problems on pdb renumbering by Sunyp_IM » Sun, 2017-08-20 06:39 |
0 |
2,080 |
by Sunyp_IM Sun, 2017-08-20 06:39 |
|
|
Comparing a prediction to the native structure and calculate RMSD for RNA by danwolf_33 » Thu, 2023-02-09 09:32 |
0 |
1,752 |
by danwolf_33 Thu, 2023-02-09 09:34 |
|
|
application for affinity optimization by wentlewi » Fri, 2020-03-13 03:24 |
0 |
912 |
by wentlewi Fri, 2020-03-13 03:24 |
|
|
FastRelax Refinement severe clashes by Victor Tobiasson » Thu, 2021-05-20 06:55 |
0 |
703 |
by Victor Tobiasson Thu, 2021-05-20 06:55 |
|
|
Folding and Docking using Symmetry by danielles » Wed, 2012-09-12 11:32 |
0 |
1,810 |
by danielles Mon, 2014-04-21 06:47 |
|
|
How many iterations of remodel is enough? by daniloboskovic » Thu, 2020-07-16 08:07 |
0 |
751 |
by daniloboskovic Thu, 2020-07-16 08:14 |
|
|
extract docking pose from ligand docking silent file by Ruska322 » Sat, 2019-09-07 05:21 |
0 |
947 |
by Ruska322 Sat, 2019-09-07 05:21 |
|
|
How to apply cartesian_ddg to multi-metric enzyme? by Wang Zhe » Wed, 2021-12-08 10:07 |
0 |
828 |
by Wang Zhe Wed, 2021-12-08 10:07 |
|
|
Protein Protein Docking with Linker by mrinal » Mon, 2023-03-20 15:58 |
0 |
614 |
by mrinal Mon, 2023-03-20 15:58 |
|
|
Urgent issue: Error with submitting a new Rosetta-Vienna RNP-ddG job by eyaaaan » Sun, 2022-08-07 22:03 |
0 |
737 |
by eyaaaan Tue, 2022-08-09 21:59 |
|
|
PDB Clustering by code_Monkey » Mon, 2021-04-05 10:40 |
0 |
683 |
by code_Monkey Mon, 2021-04-05 10:40 |
|
|
backrub application, resfile, and pivot_residues by tylerborrman » Tue, 2016-12-06 14:46 |
0 |
1,197 |
by tylerborrman Tue, 2016-12-06 14:46 |
|
|
Dock two domains using topology broker by sn » Thu, 2017-10-05 17:07 |
0 |
1,070 |
by sn Thu, 2017-10-05 17:07 |
|
|
"Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-06-04 05:53 |
0 |
790 |
by Sunyp_IM Thu, 2020-06-04 05:54 |
|
|
Protein design: Ligand binding between two units of a homodimer by chemotaxis_123 » Sun, 2022-01-02 16:01 |
0 |
830 |
by chemotaxis_123 Sun, 2022-01-02 16:01 |
|
|
RNP structure prediction flags by daniloboskovic » Fri, 2019-08-16 11:10 |
0 |
895 |
by daniloboskovic Fri, 2019-08-16 11:17 |
|
|
Robetta ab initio - TrRosetta for membrane proteins by benhardy » Wed, 2020-09-30 08:42 |
0 |
1,272 |
by benhardy Wed, 2020-09-30 08:42 |
|
|
Topobuilder segmentation fault by tatsiana.bylund » Mon, 2021-08-09 07:10 |
0 |
1,072 |
by tatsiana.bylund Mon, 2021-08-09 07:10 |
|
|
Help to understand docking results by rtorquato » Fri, 2022-11-25 12:05 |
0 |
1,325 |
by rtorquato Fri, 2022-11-25 12:05 |
|
|
FlexPepDock Multi chain receptor by evo_umich » Mon, 2018-04-02 12:13 |
0 |
1,158 |
by evo_umich Mon, 2018-04-02 12:13 |
|
|
Error with RNA_denovo by zmfowler » Thu, 2022-07-14 05:34 |
0 |
643 |
by zmfowler Thu, 2022-07-14 05:34 |
|
|
Scoring after HBNet by HHL_SIUC » Wed, 2020-07-01 10:49 |
0 |
766 |
by HHL_SIUC Wed, 2020-07-01 10:49 |
|
|
Pepspec options by shaunmk » Mon, 2015-04-27 02:33 |
0 |
1,588 |
by shaunmk Mon, 2015-04-27 02:33 |
|
|
Linker Building in scFv by sam_dc » Sat, 2021-10-09 05:38 |
0 |
698 |
by sam_dc Sat, 2021-10-09 05:38 |
|
|
RosettaAntibody3 - How can I model an extended H3? by brspurri » Fri, 2020-08-28 09:11 |
0 |
769 |
by brspurri Fri, 2020-08-28 09:11 |
|
|
help surface_docking peptide on ice by engand93 » Wed, 2019-03-27 02:43 |
0 |
922 |
by engand93 Wed, 2019-03-27 02:43 |
|
|
Error with docking_prepack_protocol while executing the tutorial "Docking Flexible Proteins" by vitoralmeida1808 » Mon, 2023-11-06 09:43 |
0 |
55 |
by vitoralmeida1808 Mon, 2023-11-06 09:43 |
|
|
pmut_scan_parallel by G Mustafa » Wed, 2018-10-17 05:41 |
0 |
1,366 |
by G Mustafa Wed, 2018-10-17 05:41 |
|
|
ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-05-21 09:42 |
0 |
872 |
by Alison_Yajie Thu, 2020-05-21 09:42 |
|
|
constraining different chains together in rosetta_cm by y_atsmonraz » Thu, 2021-11-18 02:59 |
0 |
738 |
by y_atsmonraz Thu, 2021-11-18 03:01 |
|
|
Finding lowest energy structure among generated structures by Marius1987 » Sun, 2016-04-10 11:38 |
0 |
1,494 |
by Marius1987 Sun, 2016-04-10 12:09 |
|
|
What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001." by Corvin » Thu, 2020-04-02 00:16 |
0 |
912 |
by Corvin Thu, 2020-04-02 00:16 |
|
|
Helical Symmetry Axis by Sandy » Tue, 2016-05-31 18:48 |
0 |
1,669 |
by Sandy Tue, 2016-05-31 18:48 |
|
|
RosettaAntibody3 core.pose.util error by linhhoang157 » Tue, 2020-07-28 12:40 |
0 |
923 |
by linhhoang157 Tue, 2020-07-28 12:40 |
|
|
IL-2 gets better binding with beta / gamma by tonycheng1688 » Wed, 2022-05-25 10:23 |
0 |
772 |
by tonycheng1688 Wed, 2022-05-25 10:23 |
|
|
Problems with mpi version of antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 23:06 |
0 |
998 |
by Sunyp_IM Thu, 2020-05-28 23:07 |
|
|
Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)? by Corvin » Wed, 2020-12-16 04:58 |
0 |
958 |
by Corvin Wed, 2020-12-30 09:21 |
|
|
Segfault error while running MR Rosetta in Phenix by memilton » Thu, 2021-12-16 09:09 |
0 |
902 |
by memilton Thu, 2021-12-16 09:09 |
|
|
Docking HeparinSulfate to proteins using GlycanDock by GebauerJ » Tue, 2022-08-16 07:44 |
0 |
741 |
by GebauerJ Tue, 2022-08-16 07:44 |
|
|
new BUNS for FunFolDes run by tatsiana.bylund » Wed, 2019-08-14 20:57 |
0 |
908 |
by tatsiana.bylund Wed, 2019-08-14 20:57 |
|
|
FlexPepDock ab initio: behavior without fragment files by nrollins » Mon, 2021-07-26 14:16 |
0 |
598 |
by nrollins Mon, 2021-07-26 14:16 |
|
|
Setting pivots points for GenKIC by almeida85 » Tue, 2022-10-25 02:32 |
0 |
1,548 |
by almeida85 Tue, 2022-10-25 02:32 |
|
|
Design of multimeric protein by ldlamini » Mon, 2021-01-11 07:23 |
0 |
792 |
by ldlamini Mon, 2021-01-11 07:23 |
|
|
ligand dock into HEM containg pdb by syntekabio2019 » Thu, 2022-01-20 03:05 |
0 |
913 |
by syntekabio2019 Thu, 2022-01-20 03:05 |
|
|
non-zero ddG of binding even without mutations by top-gun98 » Wed, 2023-06-07 17:19 |
0 |
240 |
by top-gun98 Wed, 2023-06-07 17:19 |
|
|
Using GlycanDock and the Antibody Affinity Maturation protocol. by tbelec » Mon, 2022-02-28 12:37 |
0 |
1,014 |
by tbelec Mon, 2022-02-28 12:37 |
|
|
How to design the anitgen-antibody interface by Sunyp_IM » Tue, 2017-12-12 18:44 |
0 |
1,145 |
by Sunyp_IM Tue, 2017-12-12 18:44 |
|
|
Symmetry mode in Remodel for N-terminal extension by yvonne.chan2 » Mon, 2019-11-04 13:41 |
0 |
1,157 |
by yvonne.chan2 Mon, 2019-11-04 13:41 |
|
|
zero standard deviation of I_sc in protein-protein docking by rohi » Fri, 2020-07-03 22:19 |
0 |
747 |
by rohi Fri, 2020-07-03 22:20 |
|
|
Segfault with Pepspec by almeida85 » Thu, 2021-02-11 02:56 |
0 |
608 |
by almeida85 Thu, 2021-02-11 02:56 |
Log in to post new content in the forum.
