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Rosetta 3 - Applications
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Fixing and Building disulfide bonds in homology modeling by kamau » Wed, 2014-09-24 11:33 |
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2,222 |
by kamau Wed, 2014-09-24 11:35 |
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Problems with waters in CoupledMoves application by Corvin » Tue, 2021-11-16 07:16 |
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559 |
by Corvin Tue, 2021-11-16 07:22 |
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Nanobody design by chandana » Tue, 2022-08-09 20:36 |
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343 |
by chandana Tue, 2022-08-09 20:36 |
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crazy loopmodel: linear output pdbs by fred » Wed, 2014-12-03 12:27 |
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1,166 |
by fred Wed, 2014-12-03 12:28 |
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Enzyme Design Not Editing Structure by liuwenxi » Wed, 2022-05-18 10:12 |
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360 |
by liuwenxi Wed, 2022-05-18 10:12 |
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charge grid in rosetta ligand docking using rosetta script by syntekabio2019 » Mon, 2022-01-17 23:53 |
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520 |
by syntekabio2019 Mon, 2022-01-17 23:53 |
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Pepspec - sequence sampling by almeida85 » Thu, 2022-06-23 04:05 |
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338 |
by almeida85 Thu, 2022-06-23 05:50 |
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remodel: what are the exact meanings of notations for secondary structure? by lanselibai » Sat, 2015-01-17 04:53 |
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1,293 |
by lanselibai Sat, 2015-01-17 07:57 |
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DDG and interaction score problem by a-eatemadi@razi... » Mon, 2018-04-09 22:54 |
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965 |
by a-eatemadi@razi... Mon, 2018-04-09 22:54 |
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Repeatability of DDG calculation by jennifer » Wed, 2015-04-08 05:29 |
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1,390 |
by jennifer Wed, 2015-04-08 05:29 |
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structure prediction by MA » Wed, 2018-09-05 00:50 |
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755 |
by MA Wed, 2018-09-05 00:50 |
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Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type" by amorin » Mon, 2021-09-27 12:16 |
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555 |
by amorin Mon, 2021-09-27 12:16 |
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score is 0 in the output? - RosettaScripts by chrisHKL » Thu, 2020-03-05 09:33 |
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697 |
by chrisHKL Thu, 2020-03-05 12:58 |
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Issues with modifying dock.xml for multiple ligand docking by DGR95 » Fri, 2021-05-14 12:51 |
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507 |
by DGR95 Fri, 2021-05-14 12:51 |
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Include MHC alpha helices in loop modelling protocol for pMHC complex by Roberto » Thu, 2022-08-04 07:22 |
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300 |
by Roberto Thu, 2022-08-04 07:22 |
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how to generate the whole molecule that contains all the symmetric chains by Sunyp_IM » Sun, 2017-12-10 19:43 |
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982 |
by Sunyp_IM Sun, 2017-12-10 19:43 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-07-02 07:05 |
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667 |
by Alison_Yajie Thu, 2020-07-02 07:10 |
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core.optimization.LineMinimizer: [ ERROR ] Inaccurate G! by aralz » Thu, 2021-02-11 00:46 |
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662 |
by aralz Thu, 2021-02-11 00:46 |
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protein relax by Alison_Yajie » Tue, 2020-05-19 08:29 |
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642 |
by Alison_Yajie Tue, 2020-05-19 08:29 |
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Grafting using antibody.mpi.linuxgccrelease and specifying custom template which doesnt have pdb id. by SubhaK » Wed, 2023-01-18 23:33 |
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410 |
by SubhaK Wed, 2023-01-18 23:33 |
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Use membrane or non-membrane weights in RosettaCM for a hexon in virus capsid? by lanselibai » Sat, 2020-04-11 02:10 |
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726 |
by lanselibai Sat, 2020-04-11 02:10 |
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using DARC in rosetta by syntekabio2019 » Thu, 2019-12-12 01:27 |
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760 |
by syntekabio2019 Thu, 2019-12-12 01:27 |
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Flex_ddG突变设计 by wangtao » Thu, 2022-05-05 02:46 |
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435 |
by wangtao Thu, 2022-05-05 02:46 |
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AbinitioRelax detect_disulf_tolerance by aarono » Tue, 2020-06-02 00:13 |
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702 |
by aarono Tue, 2020-06-02 00:13 |
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Trehalose by jpfuenzalidawx » Thu, 2022-09-08 00:49 |
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256 |
by jpfuenzalidawx Thu, 2022-09-08 00:49 |
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Limit on backbone movement in relax? by SWM » Fri, 2020-01-24 07:35 |
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700 |
by SWM Fri, 2020-01-24 07:35 |
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What is an SS0 predictor? by ojmel » Fri, 2021-04-02 14:25 |
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479 |
by ojmel Mon, 2021-04-12 07:50 |
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Local docking- should I use KIC? by seayoung lee » Fri, 2022-05-27 02:45 |
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392 |
by seayoung lee Fri, 2022-05-27 02:45 |
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fragment_picker bug by David Hoover » Wed, 2012-02-29 11:43 |
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1,580 |
by David Hoover Mon, 2014-04-21 06:47 |
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Using abinition to predict a new (previously unsolved) structure. by ac.research » Mon, 2017-01-09 00:59 |
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1,104 |
by ac.research Mon, 2017-01-09 00:59 |
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metalloprotein ab initio with glutamic acid by inorgchem » Tue, 2020-06-16 20:45 |
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505 |
by inorgchem Tue, 2020-06-16 20:45 |
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Writing down properties for new atom types by Corvin » Tue, 2021-01-12 04:30 |
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485 |
by Corvin Wed, 2021-01-13 04:00 |
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Relax in membrane pull my protein out of the membrane by Martin Floor » Wed, 2022-01-26 07:46 |
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569 |
by Martin Floor Wed, 2022-01-26 07:46 |
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clashes created with enzdes by listofdina » Mon, 2021-08-02 06:51 |
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513 |
by listofdina Mon, 2021-08-02 06:51 |
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snugdock: constrained backbone by mahendra » Mon, 2022-11-14 02:51 |
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1,260 |
by mahendra Mon, 2022-11-14 02:51 |
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Ligand Docking with ROSETTA by sc19 » Thu, 2022-07-14 01:32 |
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338 |
by sc19 Thu, 2022-07-14 01:34 |
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Reproduce Robetta's ddg values of interface alanine scan using Rosetta? by cossio » Mon, 2015-01-19 07:14 |
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2,517 |
by cossio Mon, 2015-01-19 07:14 |
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DDG_monomer ΔΔG question by asbelx » Fri, 2018-04-20 03:31 |
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946 |
by asbelx Fri, 2018-04-20 03:33 |
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Global Docking with carbohydrates by ChiauShu » Sat, 2020-08-22 20:16 |
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631 |
by ChiauShu Sat, 2020-08-22 20:16 |
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Creating fragment files for proteins less than 27 aa in length by Poladu » Tue, 2021-01-26 07:50 |
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562 |
by Poladu Tue, 2021-01-26 07:50 |
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Flex_ddG crashes when attempting to move 2 chains (e.g. chains_to_move = A,C) by jcampecino » Wed, 2020-05-13 12:22 |
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700 |
by jcampecino Wed, 2020-05-13 12:22 |
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comparative modelling of a complex by sdh_h » Sun, 2017-12-17 06:07 |
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859 |
by sdh_h Sun, 2017-12-17 06:07 |
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Metal Ion in symmetric design by tschiex » Wed, 2020-07-08 05:28 |
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627 |
by tschiex Wed, 2020-07-08 05:28 |
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Can remodel really handle multiple insertions in one simulation? by lanselibai » Sat, 2019-12-28 12:51 |
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657 |
by lanselibai Sat, 2019-12-28 12:51 |
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minimize_ppi.mpi.linuxgccrelease doesn't use jd2? by e3lm » Tue, 2022-05-17 11:58 |
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388 |
by e3lm Tue, 2022-05-17 11:58 |
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denovo_density don't output a pdb file by ylwang » Sun, 2018-11-18 17:51 |
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808 |
by ylwang Sun, 2018-11-18 17:51 |
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mp_transform optimize with franklin2019 scoring by benhardy » Thu, 2020-05-28 08:35 |
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866 |
by benhardy Thu, 2020-05-28 08:45 |
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Remodel's problem in treatment with non-protein residues by Corvin » Mon, 2021-12-13 09:07 |
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489 |
by Corvin Mon, 2021-12-13 09:07 |
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RemodelMover and Input Pose by ozyo » Tue, 2020-12-29 09:41 |
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607 |
by ozyo Tue, 2020-12-29 09:41 |
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I need help with cst file the paper: De Novo Computational Design of Retro-Aldol Enzymes by Wenithor » Thu, 2022-01-06 12:20 |
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518 |
by Wenithor Thu, 2022-01-06 12:20 |
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Pepspec Anchor Dock by Soler » Fri, 2020-09-18 08:09 |
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756 |
by Soler Fri, 2020-09-18 08:09 |
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Symmetry definition question by mrconde96 » Sun, 2022-10-02 05:34 |
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871 |
by mrconde96 Sun, 2022-10-02 05:34 |
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Patch to impose tetrahedral geometry on backbone O atom by georg » Thu, 2021-04-08 09:30 |
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504 |
by georg Thu, 2021-04-08 09:31 |
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membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template? by fglaser » Thu, 2011-04-07 07:57 |
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2,017 |
by fglaser Mon, 2014-04-21 06:47 |
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What is interface_cutoff_distance? And why did my residues outside this value get designed? by chrisHKL » Fri, 2020-02-28 14:52 |
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694 |
by chrisHKL Fri, 2020-02-28 14:52 |
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clustering output file has few structures by fabiotrovato » Mon, 2020-08-17 11:37 |
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545 |
by fabiotrovato Mon, 2020-08-17 11:37 |
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Domain insertion with Non-CAA by mwfranklin » Mon, 2017-01-16 12:30 |
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1,491 |
by mwfranklin Mon, 2017-01-16 12:30 |
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Segment File Gen - no ouput by CATarr » Wed, 2019-10-09 19:05 |
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683 |
by CATarr Wed, 2019-10-09 19:05 |
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RosettaAntibody - No matching templates for CDR1 by agctomer » Tue, 2021-01-19 22:45 |
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611 |
by agctomer Tue, 2021-01-19 22:45 |
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Generating the 3-mer and 9-mer fragments by Prasoon » Wed, 2022-02-09 09:04 |
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556 |
by Prasoon Wed, 2022-02-09 09:04 |
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Flexpepdock I_hb scoring term by mbakalar » Fri, 2018-08-31 13:05 |
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897 |
by mbakalar Fri, 2018-08-31 13:06 |
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General question regarding ligand-docking by Alison_Yajie » Thu, 2020-05-07 09:48 |
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572 |
by Alison_Yajie Thu, 2020-05-07 09:48 |
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Modelling of multi-component symmetrical structures by LanMei » Wed, 2020-10-07 09:58 |
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700 |
by LanMei Wed, 2020-10-07 09:58 |
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Problem with Scoring function and PlaceStub mover by a-eatemadi@razi... » Sat, 2018-04-07 09:22 |
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910 |
by a-eatemadi@razi... Sat, 2018-04-07 09:24 |
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wallpaper symmetry definition file by aaj » Fri, 2016-02-26 08:40 |
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1,192 |
by aaj Fri, 2016-02-26 08:40 |
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pMHC modelling by Roberto » Thu, 2022-08-04 07:11 |
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300 |
by Roberto Thu, 2022-08-04 07:11 |
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Interesting scoring performance in flexpepdock against random peptides by ziqi1234 » Fri, 2017-12-08 07:52 |
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887 |
by ziqi1234 Fri, 2017-12-08 07:52 |
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An error with score app by Genta » Tue, 2019-10-29 18:46 |
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1,046 |
by Genta Tue, 2019-10-29 18:46 |
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antibody.mpi.linuxgccrelease some antibodies failing to model by drewaight » Mon, 2020-11-02 17:07 |
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828 |
by drewaight Mon, 2020-11-02 17:07 |
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Rosetta DARc suboptimal dockings by ddhoyo » Mon, 2021-10-11 06:18 |
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458 |
by ddhoyo Mon, 2021-10-11 06:18 |
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Snugdock Error: The sequence position requested was greater than the number of residues by stannowitz » Tue, 2023-01-17 07:37 |
0 |
516 |
by stannowitz Tue, 2023-01-17 23:48 |
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Folding and Docking using Symmetry by danielles » Wed, 2012-09-12 11:32 |
0 |
1,662 |
by danielles Mon, 2014-04-21 06:47 |
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Rosetta remodel - including an RNA ligand by daniloboskovic » Fri, 2020-04-10 04:24 |
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718 |
by daniloboskovic Fri, 2020-04-10 04:24 |
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Fragment library (vall file) from Robetta? by alex » Sun, 2017-02-19 08:12 |
0 |
1,381 |
by alex Sun, 2017-02-19 08:12 |
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using piper-flexpepdock by syntekabio2019 » Thu, 2019-12-12 01:22 |
0 |
937 |
by syntekabio2019 Thu, 2019-12-12 01:22 |
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Ab Initio folding with HEM ligand molecule by jseco » Fri, 2021-03-05 06:49 |
0 |
525 |
by jseco Mon, 2021-03-08 03:40 |
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Dimeric interface redesign by kjs1728 » Mon, 2022-05-02 21:57 |
0 |
368 |
by kjs1728 Mon, 2022-05-02 21:57 |
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SecundaryStructure Filter by Soler » Sun, 2021-11-21 22:20 |
0 |
528 |
by Soler Sun, 2021-11-21 22:20 |
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Error when using Remodel on a protein with a chemically bound ligand by Pappmaschee » Wed, 2020-12-16 09:23 |
0 |
733 |
by Pappmaschee Wed, 2020-12-16 09:23 |
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simple_cycpep_predict with N-term acetylation by Ken » Fri, 2021-12-17 09:49 |
0 |
493 |
by Ken Fri, 2021-12-17 09:49 |
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FlexPepDocking by jlawrie » Tue, 2020-09-15 12:52 |
0 |
636 |
by jlawrie Tue, 2020-09-15 12:52 |
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Macrocycle from a C-terminal amidated peptide by almeida85 » Thu, 2022-08-18 07:53 |
0 |
340 |
by almeida85 Thu, 2022-08-18 07:53 |
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csrosetta.org login by jfeuva » Tue, 2014-12-09 14:49 |
0 |
24,179 |
by jfeuva Tue, 2014-12-09 14:49 |
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Zero residues error in docking by cjy318 » Tue, 2020-07-28 19:47 |
0 |
689 |
by cjy318 Tue, 2020-07-28 19:47 |
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Params for a stapled helix peptide by e3lm » Thu, 2022-05-26 12:55 |
0 |
370 |
by e3lm Thu, 2022-05-26 12:55 |
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rosetta remodel and designing helix extension by dhirajks » Thu, 2018-12-13 19:34 |
0 |
922 |
by dhirajks Thu, 2018-12-13 19:34 |
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constraints in Rosetta ligand docking (AddorRemoveMatchCsts, Addconstraints Mover, and ConstraintSetMover) by rohi » Mon, 2021-01-11 13:32 |
0 |
723 |
by rohi Mon, 2021-01-11 13:58 |
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Can anybody suggests some flags to run Rifdock? by Hyunmi Song » Sun, 2022-01-23 16:45 |
0 |
672 |
by Hyunmi Song Sun, 2022-01-23 16:45 |
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FlexPepDock bug? Constraints do not appear in total_score? by nrollins » Mon, 2021-07-26 14:29 |
0 |
468 |
by nrollins Mon, 2021-07-26 14:29 |
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Ligand Rotamer Control in Macther by Hirbond » Tue, 2022-10-25 13:01 |
0 |
1,331 |
by Hirbond Wed, 2022-10-26 12:57 |
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Secondary Matching build_sets Error by enmirts » Wed, 2018-03-28 10:33 |
0 |
880 |
by enmirts Wed, 2018-03-28 10:34 |
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multi ligand docking using rosetta script by syntekabio2019 » Tue, 2021-04-13 19:31 |
0 |
532 |
by syntekabio2019 Tue, 2021-04-13 19:31 |
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Per residue total score by johnnytam100 » Wed, 2022-07-13 21:57 |
0 |
310 |
by johnnytam100 Wed, 2022-07-13 21:57 |
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Protein-DNA Docking using RosettaScripts? by brspurri » Fri, 2013-06-07 09:06 |
1 |
4,077 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaCM/hybridize by kywei » Wed, 2021-04-28 09:56 |
1 |
691 |
by vmulligan Wed, 2021-04-28 12:59 |
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Rosetta DNA - Protein-DNA scoring function and binding energy by tanoramb » Tue, 2012-05-08 14:00 |
1 |
4,208 |
by smlewis Mon, 2014-04-21 06:47 |
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Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
1 |
3,128 |
by rmoretti Mon, 2014-04-21 06:48 |
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latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
1 |
2,412 |
by rmoretti Tue, 2014-11-04 10:33 |
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RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist. by kamau » Fri, 2017-12-01 08:42 |
1 |
1,383 |
by kamau Wed, 2017-12-13 14:31 |
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Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
1 |
2,015 |
by jadolfbr Fri, 2014-10-31 09:00 |
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