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Rosetta 3 - Applications
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why is talaris2014 scoring fuction not used with ligand docking? by banshee » Fri, 2016-09-09 01:19 |
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1,886 |
by rmoretti Fri, 2016-09-09 07:47 |
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Fastrelax problem by Pernille » Tue, 2014-06-17 08:59 |
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1,892 |
by Pernille Fri, 2014-06-20 00:17 |
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'standard.wts' does not exist by almeida85 » Mon, 2020-09-14 02:26 |
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1,000 |
by rmoretti Mon, 2020-09-14 06:36 |
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Loop modeling/closure for many structures by sn » Mon, 2017-03-06 11:25 |
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1,461 |
by rmoretti Mon, 2017-03-06 12:39 |
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input file for loop modeling by Negarsardar » Tue, 2019-04-16 10:21 |
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1,237 |
by rmoretti Tue, 2019-04-16 11:07 |
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Place ligand in a pocket by sn » Fri, 2017-09-15 12:53 |
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1,728 |
by rmoretti Fri, 2017-09-15 13:11 |
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How to analyse multiple silent files from "Abinitiorelax" output to find best models? by Danielsebas » Tue, 2019-09-10 10:01 |
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1,159 |
by smlewis Mon, 2019-09-16 12:22 |
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creating a model using a base pdb and extending a chain by rlwoltz » Fri, 2013-07-12 15:35 |
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2,484 |
by nawsad Mon, 2014-04-21 06:48 |
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rosetta 3.3 - antibody by ron amon » Mon, 2014-07-21 00:44 |
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2,237 |
by rmoretti Mon, 2014-07-21 10:51 |
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References where Rosetta is used to compute ddG of binding after mutation? by cossio » Tue, 2015-03-17 05:13 |
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2,622 |
by rmoretti Wed, 2015-03-25 11:33 |
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Incorporating iron-sulfur cluster into ROSETTA applications by Derek Smith » Thu, 2014-08-14 23:12 |
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2,424 |
by rmoretti Fri, 2014-08-15 08:06 |
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Fixing part of a ligand in dock-design by hssnzdh2 » Mon, 2015-11-23 17:14 |
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2,008 |
by rmoretti Tue, 2015-11-24 16:16 |
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SnugDock Partners parameter by tyang39 » Fri, 2022-07-08 10:02 |
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568 |
by rmoretti Fri, 2022-07-08 10:27 |
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Relax with RDC data gives segmentation fault by sn » Mon, 2018-07-23 11:39 |
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1,366 |
by rmoretti Fri, 2018-08-03 07:54 |
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I need some help for using pHDock applications(histidine protonation / pH-dependent binding) by leygkn » Tue, 2020-09-22 18:40 |
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956 |
by leygkn Tue, 2020-09-22 22:46 |
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InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
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2,678 |
by smlewis Mon, 2014-04-21 06:47 |
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Packstat application output by Vedasheersh » Mon, 2017-07-03 02:45 |
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1,796 |
by rmoretti Mon, 2017-07-03 09:17 |
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antibody - sequence position requested was 0 by jremmel » Mon, 2021-09-27 12:26 |
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905 |
by nannemdp Mon, 2021-09-27 14:22 |
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unable to generate the span file with "mp_span_from_pdb.default.linuxgccrelease" from a PDB file by Sajjad » Wed, 2022-11-30 11:40 |
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3,555 |
by FJOM Wed, 2023-05-03 07:21 |
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cluster error by sudhar » Fri, 2011-06-17 05:58 |
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2,699 |
by rmoretti Mon, 2014-04-21 06:47 |
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ambiguous constraints by shrutikhare » Mon, 2014-05-12 04:42 |
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3,112 |
by rmoretti Mon, 2014-05-12 08:25 |
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How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"? by lanselibai » Sat, 2015-01-17 11:19 |
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2,888 |
by lanselibai Wed, 2015-01-21 02:40 |
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Coding denovo prediction from density maps in PyRosetta by ahmadkhalifa » Tue, 2018-04-10 11:43 |
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1,359 |
by rmoretti Tue, 2018-04-10 15:29 |
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ProteinInterfaceDesign algorithm questions by tsztain » Mon, 2019-02-18 14:10 |
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1,499 |
by rmoretti Sun, 2019-08-25 19:15 |
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denovo modelling on a virus-coat protein dimer by aseem121 » Wed, 2019-10-16 06:55 |
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1,206 |
by danpf Wed, 2019-10-16 13:03 |
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How to calculate dG? by yperez » Mon, 2012-10-22 07:28 |
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2,717 |
by smlewis Mon, 2014-04-21 06:47 |
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Add missing residues in loop modeling by exchhattu » Thu, 2013-06-20 17:38 |
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3,379 |
by smlewis Mon, 2014-04-21 06:48 |
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Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol? by cossio » Thu, 2015-02-05 07:10 |
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2,091 |
by rmoretti Mon, 2015-02-09 12:33 |
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Enzyme Design FlexBB Protocol Bug: DNA/RNA handling by kettner » Fri, 2019-06-14 14:16 |
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1,630 |
by rmoretti Mon, 2019-06-24 13:46 |
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residue_energy_breakdown of a protein-ligand complex. by sam_dc » Tue, 2021-05-18 04:45 |
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881 |
by rmoretti Tue, 2021-05-18 07:21 |
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Snugdock_error by luicui » Thu, 2017-02-09 21:06 |
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1,520 |
by smlewis Thu, 2017-02-09 21:50 |
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Interface Analyzer Segmentation Fault by h_trasatti » Tue, 2017-02-21 12:48 |
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2,024 |
by smlewis Tue, 2017-02-21 14:10 |
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Warning: Fold tree is not set properly for density scoring by ahansel » Mon, 2020-07-13 10:50 |
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1,044 |
by danpf Tue, 2020-07-14 10:27 |
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Using different number of 9-mers (UPDATED) by JadAbbass » Mon, 2017-08-28 07:20 |
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1,692 |
by rmoretti Mon, 2017-09-04 10:33 |
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docking with capping groups by xavierfradera » Sun, 2018-11-04 16:17 |
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1,309 |
by maral.adeli-kou... Wed, 2020-01-22 12:41 |
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Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms by Corvin » Wed, 2020-12-02 04:00 |
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896 |
by rmoretti Wed, 2020-12-02 07:27 |
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Question on restraining receptor symmetry when docking ligand by subha » Fri, 2018-07-06 21:59 |
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1,307 |
by rmoretti Fri, 2018-08-03 08:16 |
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RosettaMatch by xingqing326 » Mon, 2019-07-22 13:14 |
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1,528 |
by rmoretti Mon, 2019-08-26 12:57 |
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How to use base_pair_constraint for RNA as a constraint term？ by yels » Sat, 2021-04-03 01:19 |
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823 |
by everyday847 Sun, 2021-04-04 12:48 |
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Design with limited number of aminoacids at given position by sdh_h » Sun, 2016-12-04 03:44 |
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1,680 |
by smlewis Thu, 2016-12-08 15:50 |
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dssp by MA » Thu, 2017-10-05 09:34 |
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1,567 |
by rmoretti Tue, 2017-10-10 09:54 |
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[LoopModelerMover] ERROR: Can't build a fold tree from a loop with an unspecified cut point. by dgm3 » Sun, 2021-12-26 18:32 |
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887 |
by dgm3 Fri, 2021-12-31 17:42 |
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Missing atoms, unable to fill in missing atoms by kwu030 » Fri, 2023-05-05 13:41 |
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74 |
by rmoretti Fri, 2023-05-05 13:44 |
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AbinitioRelax Disulfide Bonds are not being retained by brspurri » Wed, 2011-09-28 13:55 |
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4,133 |
by parmef Mon, 2014-04-21 06:47 |
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duplex RNA by amir_tagh » Thu, 2021-08-05 06:34 |
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772 |
by everyday847 Mon, 2021-08-16 10:43 |
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Score.sc file showing total score 0 for all protein structures created by aanshi » Wed, 2022-11-23 11:13 |
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2,960 |
by nannemdp Mon, 2022-11-28 09:39 |
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No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
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2,606 |
by jarod Mon, 2014-04-21 06:47 |
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splitfile.py by saladi » Fri, 2018-03-30 10:31 |
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1,511 |
by rmoretti Tue, 2018-04-10 15:34 |
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How can I model ligands in comparative modeling by Morrian_Lynn » Thu, 2020-02-20 09:57 |
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1,029 |
by danpf Fri, 2020-02-21 17:05 |
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Docking Analysis and Metrics in RosettaLigand. by sam_dc » Tue, 2021-04-20 03:54 |
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1,328 |
by rmoretti Tue, 2021-04-20 13:27 |
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problem with modelling of protein (140 and 150 residues respectively) by krlitros87 » Wed, 2014-10-22 09:39 |
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1,910 |
by rmoretti Thu, 2014-10-23 13:55 |
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Homology modelling applies alignment wrong by bernhardcl » Thu, 2015-08-06 09:39 |
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1,852 |
by bernhardcl Tue, 2015-08-11 09:11 |
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comparative modeling of a homodimer by banshee » Mon, 2017-01-09 18:34 |
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2,128 |
by rmoretti Wed, 2017-01-11 13:00 |
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[Solved] Resetting a pose with RigidBodyTransMover by bjharris » Wed, 2021-01-13 14:01 |
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831 |
by bjharris Fri, 2021-01-22 17:34 |
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Problem with AtomPair constraint by jarek » Tue, 2012-10-09 07:28 |
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2,175 |
by smlewis Mon, 2014-04-21 06:47 |
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Ligand creation by Prasanth Kumar » Fri, 2013-08-02 09:48 |
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2,247 |
by rmoretti Mon, 2014-04-21 06:48 |
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Multistate design issues with -run:msd_job_dist option and MSDMover by elaine.thai » Wed, 2020-05-13 18:07 |
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2,453 |
by tangzi Mon, 2023-03-06 09:50 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
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2,415 |
by rmoretti Mon, 2014-05-12 15:08 |
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radius of gyration as constrain by dhirajks » Sat, 2018-05-05 23:00 |
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1,467 |
by smlewis Mon, 2018-05-07 11:42 |
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error mesages from RosettaDock by AlanZhao » Mon, 2011-03-21 11:42 |
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2,365 |
by smlewis Mon, 2014-04-21 06:47 |
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how to run my openmp programe in rosetta3.3? by lihowe » Mon, 2012-02-27 23:43 |
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2,223 |
by smlewis Mon, 2014-04-21 06:47 |
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Antibody Modelling by luicui » Mon, 2017-01-23 21:30 |
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2,002 |
by smlewis Mon, 2017-02-06 20:46 |
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blast database error by jessye » Sun, 2017-12-03 23:59 |
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1,607 |
by smlewis Mon, 2017-12-04 12:18 |
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Comparative modeling using a two chained template for a one chain structure by ahmadkhalifa » Mon, 2017-12-18 11:00 |
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1,367 |
by rmoretti Mon, 2018-01-15 16:14 |
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De novo water predictions using SPaDES by MNP1986 » Mon, 2019-03-25 07:53 |
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1,507 |
by matteoferla Tue, 2020-08-04 09:30 |
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Representing Cross-linked nitrogens by jjlee2 » Sat, 2011-11-26 18:42 |
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2,256 |
by smlewis Mon, 2014-04-21 06:47 |
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Comparative modeling by MRH » Mon, 2013-08-19 23:08 |
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2,271 |
by smlewis Mon, 2014-04-21 06:48 |
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SymDock with constraints by felipet » Thu, 2015-05-14 09:01 |
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2,871 |
by rmoretti Mon, 2015-05-25 11:49 |
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Predicting the part of protein strcutrue by ksy141 » Tue, 2018-10-16 11:47 |
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1,267 |
by jadolfbr Fri, 2018-11-09 14:28 |
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/database folder after running "install_dependencies.pl" size 657 GB? by Danielsebas » Tue, 2019-09-03 03:32 |
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1,121 |
by danpf Tue, 2019-09-03 10:15 |
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Changing rosetta scoring to favour less hydrophobic areas by daniloboskovic » Thu, 2020-05-21 03:03 |
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958 |
by vmulligan Thu, 2020-05-21 18:33 |
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score_jd2.linuxgccrelease documentation by fglaser » Mon, 2011-08-01 04:08 |
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3,685 |
by smlewis Mon, 2014-04-21 06:47 |
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trouble in floppytail modelling by ytao » Thu, 2013-06-27 13:15 |
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2,249 |
by ytao Mon, 2014-04-21 06:48 |
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Executing the clean_pdb.py script by Rkfoury » Fri, 2015-02-20 10:16 |
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3,601 |
by lanselibai Tue, 2015-02-24 02:36 |
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Enzyme Design - Score File by nwhoppe » Thu, 2016-04-07 15:11 |
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1,918 |
by rmoretti Fri, 2016-04-08 07:39 |
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Rosetta_cm Partial Threading Removing Parts of Sequence by gszwabowski » Thu, 2019-06-20 12:30 |
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1,394 |
by rmoretti Mon, 2019-06-24 13:43 |
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Rosetta DNA - Protein-DNA scoring function and binding energy by tanoramb » Tue, 2012-05-08 14:00 |
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4,328 |
by smlewis Mon, 2014-04-21 06:47 |
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score and relax by Prasanth Kumar » Thu, 2013-05-02 05:09 |
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3,075 |
by jadolfbr Mon, 2014-04-21 06:47 |
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JD2 MPI by jrcf » Wed, 2015-10-28 14:45 |
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2,069 |
by rmoretti Sat, 2015-10-31 08:57 |
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RosettaLigand Docking by Dinesh Kumar » Mon, 2018-01-15 20:54 |
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1,909 |
by rmoretti Tue, 2018-01-16 07:24 |
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is it necessary to always run relax before any Rosetta by mainzer » Fri, 2019-04-12 01:35 |
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1,639 |
by rmoretti Wed, 2019-07-10 09:47 |
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How to freeze ligand during FastRelax? by dnamkr » Thu, 2020-01-02 14:53 |
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1,305 |
by aloshbau Fri, 2020-01-10 16:48 |
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pepspec anchor dock by Andre Serobian » Tue, 2020-07-28 05:51 |
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992 |
by Andre Serobian Tue, 2020-07-28 23:26 |
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Surface Docking Crash (continued) by dkozuch » Tue, 2017-09-12 06:18 |
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1,432 |
by rmoretti Tue, 2017-10-10 10:08 |
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AbinitioRelax - Error with flags by jmschu » Wed, 2018-11-21 17:36 |
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1,854 |
by rmoretti Fri, 2018-11-23 07:59 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:30 |
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865 |
by taylorjones Wed, 2021-06-09 16:38 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:16 |
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1,778 |
by rmoretti Fri, 2016-06-17 10:24 |
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how to pick fragments for a transmembrane protein by tevang » Mon, 2012-05-28 06:52 |
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2,067 |
by tevang Mon, 2014-04-21 06:47 |
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modeling 4 linkers between 2 domains by pdbb » Thu, 2013-05-16 08:23 |
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2,238 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close? by cossio » Fri, 2014-12-26 13:11 |
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1,899 |
by rmoretti Tue, 2015-01-13 07:44 |
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cluster.linuxgccrelease Killed error by samuelrpita » Fri, 2015-11-20 05:56 |
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2,127 |
by rmoretti Tue, 2015-11-24 16:07 |
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loop design for Conformational bias by dhirajks » Thu, 2019-05-09 21:22 |
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1,312 |
by jadolfbr Fri, 2019-05-10 07:53 |
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error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease by xinmiaohe » Thu, 2020-01-30 22:09 |
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1,681 |
by xinmiaohe Fri, 2020-01-31 08:23 |
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profit program in antibody design by tzhou » Tue, 2013-10-15 23:29 |
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2,621 |
by rmoretti Mon, 2014-04-21 06:48 |
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how to generate Fragments using up to 2001 structures only by oppopomoz » Sat, 2015-07-25 00:43 |
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1,863 |
by rmoretti Thu, 2015-08-06 08:57 |
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Can I use rosetta binaries built in one linux system to another linux system? by Danielsebas » Wed, 2019-09-18 06:49 |
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1,203 |
by rmoretti Wed, 2019-09-18 10:36 |
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[Solved] RosettaAntibody3 - Grafting step is failing to detect H3 from the input sequence by brspurri » Mon, 2021-01-04 16:46 |
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1,013 |
by brspurri Mon, 2021-01-18 18:14 |
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PDB file name too long to be handled by file system by dave » Thu, 2019-08-08 03:10 |
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1,116 |
by rmoretti Mon, 2019-08-26 12:17 |
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minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion by Kharlamov1317a » Mon, 2020-09-21 08:46 |
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1,484 |
by Kharlamov1317a Wed, 2020-10-07 08:26 |
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Stepwise Monte Carlo - errors with ResidueTypeSet and Disulfides by user42 » Wed, 2021-07-21 20:34 |
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758 |
by everyday847 Fri, 2021-07-30 13:26 |
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