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Rosetta 3 - Applications
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Antibody Modelling by luicui » Mon, 2017-01-23 21:30 |
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1,923 |
by smlewis Mon, 2017-02-06 20:46 |
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blast database error by jessye » Sun, 2017-12-03 23:59 |
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1,509 |
by smlewis Mon, 2017-12-04 12:18 |
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Comparative modeling by MRH » Mon, 2013-08-19 23:08 |
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2,206 |
by smlewis Mon, 2014-04-21 06:48 |
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Representing Cross-linked nitrogens by jjlee2 » Sat, 2011-11-26 18:42 |
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2,189 |
by smlewis Mon, 2014-04-21 06:47 |
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SymDock with constraints by felipet » Thu, 2015-05-14 09:01 |
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2,789 |
by rmoretti Mon, 2015-05-25 11:49 |
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Predicting the part of protein strcutrue by ksy141 » Tue, 2018-10-16 11:47 |
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1,185 |
by jadolfbr Fri, 2018-11-09 14:28 |
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/database folder after running "install_dependencies.pl" size 657 GB? by Danielsebas » Tue, 2019-09-03 03:32 |
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1,044 |
by danpf Tue, 2019-09-03 10:15 |
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Changing rosetta scoring to favour less hydrophobic areas by daniloboskovic » Thu, 2020-05-21 03:03 |
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877 |
by vmulligan Thu, 2020-05-21 18:33 |
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score_jd2.linuxgccrelease documentation by fglaser » Mon, 2011-08-01 04:08 |
1 |
3,589 |
by smlewis Mon, 2014-04-21 06:47 |
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trouble in floppytail modelling by ytao » Thu, 2013-06-27 13:15 |
1 |
2,182 |
by ytao Mon, 2014-04-21 06:48 |
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Executing the clean_pdb.py script by Rkfoury » Fri, 2015-02-20 10:16 |
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3,454 |
by lanselibai Tue, 2015-02-24 02:36 |
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Enzyme Design - Score File by nwhoppe » Thu, 2016-04-07 15:11 |
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1,823 |
by rmoretti Fri, 2016-04-08 07:39 |
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Rosetta_cm Partial Threading Removing Parts of Sequence by gszwabowski » Thu, 2019-06-20 12:30 |
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1,300 |
by rmoretti Mon, 2019-06-24 13:43 |
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Holes output interpretation by lah435 » Mon, 2012-06-04 15:02 |
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2,191 |
by smlewis Mon, 2014-04-21 06:47 |
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Comparative modeling using a two chained template for a one chain structure by ahmadkhalifa » Mon, 2017-12-18 11:00 |
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1,292 |
by rmoretti Mon, 2018-01-15 16:14 |
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De novo water predictions using SPaDES by MNP1986 » Mon, 2019-03-25 07:53 |
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1,415 |
by matteoferla Tue, 2020-08-04 09:30 |
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score and relax by Prasanth Kumar » Thu, 2013-05-02 05:09 |
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3,004 |
by jadolfbr Mon, 2014-04-21 06:47 |
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relax VS. backrub by jiongzhang » Mon, 2012-07-02 14:52 |
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2,277 |
by smlewis Mon, 2014-04-21 06:47 |
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JD2 MPI by jrcf » Wed, 2015-10-28 14:45 |
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1,977 |
by rmoretti Sat, 2015-10-31 08:57 |
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RosettaLigand Docking by Dinesh Kumar » Mon, 2018-01-15 20:54 |
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1,819 |
by rmoretti Tue, 2018-01-16 07:24 |
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is it necessary to always run relax before any Rosetta by mainzer » Fri, 2019-04-12 01:35 |
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1,527 |
by rmoretti Wed, 2019-07-10 09:47 |
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How to freeze ligand during FastRelax? by dnamkr » Thu, 2020-01-02 14:53 |
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1,217 |
by aloshbau Fri, 2020-01-10 16:48 |
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pepspec anchor dock by Andre Serobian » Tue, 2020-07-28 05:51 |
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904 |
by Andre Serobian Tue, 2020-07-28 23:26 |
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Surface Docking Crash (continued) by dkozuch » Tue, 2017-09-12 06:18 |
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1,363 |
by rmoretti Tue, 2017-10-10 10:08 |
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AbinitioRelax - Error with flags by jmschu » Wed, 2018-11-21 17:36 |
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1,749 |
by rmoretti Fri, 2018-11-23 07:59 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:30 |
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742 |
by taylorjones Wed, 2021-06-09 16:38 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:16 |
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1,696 |
by rmoretti Fri, 2016-06-17 10:24 |
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modeling 4 linkers between 2 domains by pdbb » Thu, 2013-05-16 08:23 |
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2,168 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close? by cossio » Fri, 2014-12-26 13:11 |
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1,821 |
by rmoretti Tue, 2015-01-13 07:44 |
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cluster.linuxgccrelease Killed error by samuelrpita » Fri, 2015-11-20 05:56 |
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2,050 |
by rmoretti Tue, 2015-11-24 16:07 |
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loop design for Conformational bias by dhirajks » Thu, 2019-05-09 21:22 |
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1,240 |
by jadolfbr Fri, 2019-05-10 07:53 |
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error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease by xinmiaohe » Thu, 2020-01-30 22:09 |
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1,531 |
by xinmiaohe Fri, 2020-01-31 08:23 |
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profit program in antibody design by tzhou » Tue, 2013-10-15 23:29 |
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2,535 |
by rmoretti Mon, 2014-04-21 06:48 |
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Surface accessible residue as a constraint. by arthuc01 » Fri, 2012-03-09 23:27 |
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1,997 |
by smlewis Mon, 2014-04-21 06:47 |
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how to generate Fragments using up to 2001 structures only by oppopomoz » Sat, 2015-07-25 00:43 |
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1,775 |
by rmoretti Thu, 2015-08-06 08:57 |
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Can I use rosetta binaries built in one linux system to another linux system? by Danielsebas » Wed, 2019-09-18 06:49 |
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1,129 |
by rmoretti Wed, 2019-09-18 10:36 |
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[Solved] RosettaAntibody3 - Grafting step is failing to detect H3 from the input sequence by brspurri » Mon, 2021-01-04 16:46 |
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924 |
by brspurri Mon, 2021-01-18 18:14 |
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PDB file name too long to be handled by file system by dave » Thu, 2019-08-08 03:10 |
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1,033 |
by rmoretti Mon, 2019-08-26 12:17 |
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minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion by Kharlamov1317a » Mon, 2020-09-21 08:46 |
1 |
1,345 |
by Kharlamov1317a Wed, 2020-10-07 08:26 |
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Stepwise Monte Carlo - errors with ResidueTypeSet and Disulfides by user42 » Wed, 2021-07-21 20:34 |
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681 |
by everyday847 Fri, 2021-07-30 13:26 |
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Small molecule dimer/trimer/etc docking by lukasz » Tue, 2022-10-04 06:49 |
1 |
1,097 |
by rmoretti Tue, 2022-10-04 07:57 |
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FlexPepDock in RosettaScripts keeps running by gw » Tue, 2012-08-21 12:31 |
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2,354 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta_scripts error, Got some signal... It is:6 by jhm13c » Fri, 2017-04-14 14:05 |
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1,768 |
by rmoretti Sat, 2017-04-15 13:30 |
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Relax with multiple small molecules by jharamesh » Sun, 2019-05-26 19:34 |
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1,336 |
by rmoretti Mon, 2019-06-24 15:19 |
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Ddg filter threshold value? by chrisHKL » Fri, 2020-02-28 15:01 |
1 |
933 |
by rmoretti Wed, 2020-03-04 09:56 |
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shape complementarity by holdenj » Fri, 2022-07-15 13:24 |
1 |
391 |
by rmoretti Fri, 2022-07-15 13:50 |
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Script for loop modeling: how to define loop sequence by batch2k » Thu, 2014-10-30 12:58 |
1 |
1,932 |
by jadolfbr Fri, 2014-10-31 08:45 |
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"install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage by Corvin » Thu, 2019-10-10 02:20 |
1 |
1,148 |
by danpf Thu, 2019-10-10 09:55 |
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How to select docked models by Sunyp_IM » Mon, 2020-06-22 00:50 |
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839 |
by ssrb Mon, 2020-06-22 13:12 |
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antibody protocol fails by hamedkhakzad » Mon, 2019-08-19 07:43 |
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1,112 |
by smlewis Tue, 2019-10-22 09:45 |
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Error with FlexPepDock by aloshbau » Sat, 2013-08-10 11:51 |
1 |
2,349 |
by rmoretti Mon, 2014-04-21 06:48 |
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rosetta scores for mutated structures by harshkhare » Wed, 2011-11-23 09:30 |
1 |
2,493 |
by rmoretti Mon, 2014-04-21 06:47 |
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Snugdock+ensembledock usage by Anouk » Mon, 2014-09-22 08:09 |
1 |
2,684 |
by jadolfbr Mon, 2014-10-20 13:42 |
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Should I trust the score output from relax used with a protein complex? by cossio » Thu, 2015-05-07 06:08 |
1 |
1,856 |
by rmoretti Mon, 2015-05-25 12:37 |
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C-termini remodelling of dimeric structure removes second chain by LeonhardJS » Wed, 2021-10-13 06:23 |
1 |
704 |
by LeonhardJS Fri, 2021-11-12 01:20 |
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interface_delta ligand_docking by Prasanth Kumar » Tue, 2013-06-18 08:37 |
1 |
2,343 |
by rmoretti Mon, 2014-04-21 06:48 |
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Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
1 |
2,486 |
by smlewis Mon, 2014-04-21 06:47 |
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Generating non-redundat dataset for loop models by dario.corrada » Wed, 2016-03-09 03:00 |
1 |
1,601 |
by smlewis Wed, 2016-03-09 04:11 |
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Model two domain protein by sn » Sat, 2017-05-06 13:21 |
1 |
1,615 |
by rmoretti Mon, 2017-05-15 08:54 |
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rosetta's keyword list by fred » Tue, 2014-01-21 06:03 |
1 |
2,453 |
by rmoretti Mon, 2014-04-21 06:48 |
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Two questions on the RosettaScripts flexbb-interfacedesign.xml by johnnytam100 » Fri, 2019-03-15 04:54 |
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1,340 |
by rmoretti Fri, 2019-03-29 09:58 |
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homology membrane modeling demo in rosetta 3.5 by rlwoltz » Mon, 2013-09-09 10:26 |
1 |
2,623 |
by smlewis Mon, 2014-04-21 06:48 |
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Syntax to extract PDB files from a silent file by lanselibai » Fri, 2014-09-26 13:48 |
1 |
3,535 |
by lanselibai Fri, 2014-09-26 14:58 |
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Using residue patches in AbinitioRelax by kent » Fri, 2018-11-02 11:19 |
1 |
1,509 |
by rmoretti Wed, 2018-11-21 15:40 |
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membrane modeling error by benniu2004 » Mon, 2013-07-01 17:59 |
1 |
2,234 |
by smlewis Mon, 2014-04-21 06:48 |
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Failed glycine check when running RosettaRemodel to build disulfide by cheyuk » Fri, 2014-06-27 02:31 |
1 |
1,861 |
by everyday847 Sun, 2014-09-28 21:16 |
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Design a peptide linked to small molecule ligand by shaunmk » Mon, 2015-03-02 09:05 |
1 |
2,215 |
by rmoretti Wed, 2015-03-25 12:39 |
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sequence design to enhance Fc / Fc-g Receptor binding by jarod » Tue, 2017-05-23 09:00 |
1 |
1,445 |
by jadolfbr Thu, 2017-06-01 10:00 |
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protein-protein docking by cbala » Mon, 2011-04-18 09:15 |
1 |
2,324 |
by smlewis Mon, 2014-04-21 06:47 |
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contents of span file by tevang » Mon, 2013-04-15 05:01 |
1 |
2,293 |
by smlewis Mon, 2014-04-21 06:47 |
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heads up for constraints using GAUSSIANFUNC by attesor » Thu, 2015-10-22 07:30 |
1 |
1,652 |
by smlewis Thu, 2015-10-22 08:04 |
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Docking prepack vs. relax by David Weis » Tue, 2017-02-21 05:37 |
1 |
1,705 |
by smlewis Tue, 2017-02-21 07:58 |
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PEPSPEC by Neeraj » Wed, 2018-01-03 02:24 |
1 |
1,417 |
by Andre Serobian Wed, 2020-07-08 04:44 |
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Options for Enzdes RosettaScripts by joeg » Wed, 2014-03-12 09:28 |
1 |
2,565 |
by rmoretti Thu, 2014-03-13 08:04 |
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Segmentation fault when running Abinito Relax by Hongtham » Mon, 2014-12-15 07:16 |
1 |
2,803 |
by rmoretti Fri, 2015-01-02 11:45 |
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Protein/Protein Ddg demo: How to write predicted mutant structures? by cossio » Wed, 2015-11-04 20:14 |
1 |
1,652 |
by rmoretti Tue, 2015-11-10 11:10 |
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running structure prediction with robetta server like automation by dhirajks » Mon, 2018-01-29 21:32 |
1 |
1,772 |
by rmoretti Tue, 2018-01-30 07:51 |
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Highly negative total score by Ruchi_P_Jain » Wed, 2019-04-24 19:55 |
1 |
1,349 |
by nannemdp Thu, 2019-04-25 07:58 |
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mpirun docking_protocol by NanB » Mon, 2020-08-03 11:38 |
1 |
2,176 |
by ssrb Fri, 2020-08-14 09:18 |
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Full Protocol by shekhar » Fri, 2013-10-04 01:07 |
1 |
2,749 |
by rmoretti Mon, 2014-04-21 06:48 |
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Docking with loop rebuilding by kxiao » Sun, 2015-06-28 19:37 |
1 |
1,892 |
by rmoretti Fri, 2015-07-03 14:41 |
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Ddg_monomer: implementing disulfides by kabol » Wed, 2016-11-30 02:39 |
1 |
1,968 |
by rmoretti Wed, 2016-11-30 07:46 |
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docking parse error by dave » Tue, 2018-12-04 08:41 |
1 |
1,560 |
by rmoretti Tue, 2018-12-04 08:55 |
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ERROR: APBS failed to generate the result file. by bhavranek » Sat, 2021-12-18 11:01 |
1 |
643 |
by bhavranek Sun, 2021-12-26 21:05 |
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FASTA for Octopus by Smbat » Wed, 2020-09-16 05:40 |
1 |
1,090 |
by rmoretti Wed, 2020-09-16 22:11 |
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Unsatisfied interface H-bond in Ligand docking by Prasanth Kumar » Thu, 2013-07-18 12:04 |
1 |
3,801 |
by rmoretti Mon, 2014-04-21 06:48 |
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relax job failed by albumns » Sat, 2014-07-26 00:21 |
1 |
1,847 |
by rmoretti Sun, 2014-07-27 10:48 |
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CartesianRefiner compilation problem by DmitriiN » Tue, 2015-12-15 08:52 |
1 |
1,742 |
by rmoretti Tue, 2015-12-15 09:48 |
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Modeling-Using RosettaCM by jlawrie » Wed, 2020-08-12 08:46 |
1 |
800 |
by jlawrie Wed, 2020-08-12 08:47 |
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restrain residues in docking by albumns » Sat, 2013-11-02 08:52 |
1 |
2,355 |
by jadolfbr Mon, 2014-04-21 06:48 |
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autoNOE peak lists by aep » Thu, 2015-08-06 06:15 |
1 |
1,893 |
by sgourn Tue, 2015-08-18 18:25 |
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UnfoldedStateEnergyCalculator MPI Error by colin.walsh.brown » Mon, 2017-11-13 09:43 |
1 |
1,563 |
by smlewis Mon, 2017-11-13 10:43 |
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Energy function and iteration script files by michelleqyh » Fri, 2019-09-27 09:06 |
1 |
987 |
by smlewis Fri, 2019-09-27 11:54 |
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How does the label in pdb files looks like when using ResiduePDBInfoHasLabel? by johnnytam100 » Fri, 2019-08-16 00:25 |
1 |
1,352 |
by JackMaguire Fri, 2019-08-16 07:41 |
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Input structure by Soler » Mon, 2020-09-28 13:18 |
1 |
795 |
by ssrb Tue, 2020-09-29 12:37 |
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Problem in using "loopmodel" application to add missing residues by sushreet » Wed, 2014-08-27 12:43 |
1 |
1,796 |
by rmoretti Thu, 2014-08-28 09:42 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Wed, 2016-07-06 10:35 |
1 |
1,773 |
by rmoretti Tue, 2016-07-12 08:56 |
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Question on Designing with NCAAs by salvatta » Mon, 2018-09-10 10:09 |
1 |
1,342 |
by rmoretti Thu, 2018-09-20 09:23 |
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Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively? by johnnytam100 » Fri, 2019-08-23 21:10 |
1 |
1,028 |
by rmoretti Mon, 2019-08-26 12:03 |
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trRosetta - Nan occuring in Hbond calculation by y_atsmonraz » Mon, 2021-10-04 09:16 |
1 |
661 |
by shivarawat115 Mon, 2022-04-11 16:10 |
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