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Rosetta 3 - Applications

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Normal topic Failed glycine check when running RosettaRemodel to build disulfide
by cheyuk » Fri, 2014-06-27 02:31
1
2,026 by everyday847
Sun, 2014-09-28 21:16
Normal topic Design a peptide linked to small molecule ligand
by shaunmk » Mon, 2015-03-02 09:05
1
2,404 by rmoretti
Wed, 2015-03-25 12:39
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
1,612 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic contents of span file
by tevang » Mon, 2013-04-15 05:01
1
2,429 by smlewis
Mon, 2014-04-21 06:47
Normal topic heads up for constraints using GAUSSIANFUNC
by attesor » Thu, 2015-10-22 07:30
1
1,810 by smlewis
Thu, 2015-10-22 08:04
Normal topic Docking prepack vs. relax
by David Weis » Tue, 2017-02-21 05:37
1
1,956 by smlewis
Tue, 2017-02-21 07:58
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
1
1,615 by Andre Serobian
Wed, 2020-07-08 04:44
Normal topic homology membrane modeling demo in rosetta 3.5
by rlwoltz » Mon, 2013-09-09 10:26
1
2,765 by smlewis
Mon, 2014-04-21 06:48
Normal topic Syntax to extract PDB files from a silent file
by lanselibai » Fri, 2014-09-26 13:48
1
3,764 by lanselibai
Fri, 2014-09-26 14:58
Normal topic Using residue patches in AbinitioRelax
by kent » Fri, 2018-11-02 11:19
1
1,734 by rmoretti
Wed, 2018-11-21 15:40
Normal topic Full Protocol
by shekhar » Fri, 2013-10-04 01:07
1
2,909 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking with loop rebuilding
by kxiao » Sun, 2015-06-28 19:37
1
2,074 by rmoretti
Fri, 2015-07-03 14:41
Normal topic Ddg_monomer: implementing disulfides
by kabol » Wed, 2016-11-30 02:39
1
2,163 by rmoretti
Wed, 2016-11-30 07:46
Normal topic docking parse error
by dave » Tue, 2018-12-04 08:41
1
1,776 by rmoretti
Tue, 2018-12-04 08:55
Normal topic ERROR: APBS failed to generate the result file.
by bhavranek » Sat, 2021-12-18 11:01
1
927 by bhavranek
Sun, 2021-12-26 21:05
Normal topic FASTA for Octopus
by Smbat » Wed, 2020-09-16 05:40
1
1,308 by rmoretti
Wed, 2020-09-16 22:11
Normal topic Unsatisfied interface H-bond in Ligand docking
by Prasanth Kumar » Thu, 2013-07-18 12:04
1
3,987 by rmoretti
Mon, 2014-04-21 06:48
Normal topic relax job failed
by albumns » Sat, 2014-07-26 00:21
1
2,013 by rmoretti
Sun, 2014-07-27 10:48
Normal topic Options for Enzdes RosettaScripts
by joeg » Wed, 2014-03-12 09:28
1
2,742 by rmoretti
Thu, 2014-03-13 08:04
Normal topic Segmentation fault when running Abinito Relax
by Hongtham » Mon, 2014-12-15 07:16
1
2,994 by rmoretti
Fri, 2015-01-02 11:45
Normal topic Protein/Protein Ddg demo: How to write predicted mutant structures?
by cossio » Wed, 2015-11-04 20:14
1
1,807 by rmoretti
Tue, 2015-11-10 11:10
Normal topic running structure prediction with robetta server like automation
by dhirajks » Mon, 2018-01-29 21:32
1
1,954 by rmoretti
Tue, 2018-01-30 07:51
Normal topic Highly negative total score
by Ruchi_P_Jain » Wed, 2019-04-24 19:55
1
1,574 by nannemdp
Thu, 2019-04-25 07:58
Normal topic mpirun docking_protocol
by NanB » Mon, 2020-08-03 11:38
1
2,604 by ssrb
Fri, 2020-08-14 09:18
Normal topic restrain residues in docking
by albumns » Sat, 2013-11-02 08:52
1
2,507 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic autoNOE peak lists
by aep » Thu, 2015-08-06 06:15
1
2,071 by sgourn
Tue, 2015-08-18 18:25
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
1,739 by smlewis
Mon, 2017-11-13 10:43
Normal topic Energy function and iteration script files
by michelleqyh » Fri, 2019-09-27 09:06
1
1,142 by smlewis
Fri, 2019-09-27 11:54
Normal topic How does the label in pdb files looks like when using ResiduePDBInfoHasLabel?
by johnnytam100 » Fri, 2019-08-16 00:25
1
1,540 by JackMaguire
Fri, 2019-08-16 07:41
Normal topic Input structure
by Soler » Mon, 2020-09-28 13:18
1
966 by ssrb
Tue, 2020-09-29 12:37
Normal topic AbinitioRelax Disulfide Bonds are not being retained
by brspurri » Wed, 2011-09-28 13:55
1
4,243 by parmef
Mon, 2014-04-21 06:47
Normal topic CartesianRefiner compilation problem
by DmitriiN » Tue, 2015-12-15 08:52
1
1,913 by rmoretti
Tue, 2015-12-15 09:48
Normal topic Modeling-Using RosettaCM
by jlawrie » Wed, 2020-08-12 08:46
1
964 by jlawrie
Wed, 2020-08-12 08:47
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
2,871 by jharamesh
Mon, 2014-11-03 12:50
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
1
1,803 by rmoretti
Fri, 2017-04-21 07:41
Normal topic AddHelixSequenceConstraints Mover2
by Negarsardar » Sat, 2019-06-01 01:54
1
1,275 by vmulligan
Thu, 2019-06-13 15:01
Normal topic protein-protein docking with flexible backbone
by tim » Fri, 2013-12-20 05:52
1
4,222 by rmoretti
Mon, 2014-04-21 06:48
Normal topic "Segmentation fault" for "minirosetta.linuxgccrelease"
by lanselibai » Tue, 2014-11-04 03:17
1
2,681 by rmoretti
Tue, 2014-11-04 08:53
Normal topic ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease
by cossio » Thu, 2015-09-03 08:46
1
2,943 by rmoretti
Fri, 2015-09-04 10:25
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
1,448 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic Unexpected Error with RosettaCM -
by terry » Fri, 2019-02-22 14:26
1
3,068 by rmoretti
Fri, 2019-03-29 12:25
Normal topic Problem in using "loopmodel" application to add missing residues
by sushreet » Wed, 2014-08-27 12:43
1
1,970 by rmoretti
Thu, 2014-08-28 09:42
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Wed, 2016-07-06 10:35
1
1,944 by rmoretti
Tue, 2016-07-12 08:56
Normal topic Question on Designing with NCAAs
by salvatta » Mon, 2018-09-10 10:09
1
1,520 by rmoretti
Thu, 2018-09-20 09:23
Normal topic Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively?
by johnnytam100 » Fri, 2019-08-23 21:10
1
1,214 by rmoretti
Mon, 2019-08-26 12:03
Normal topic trRosetta - Nan occuring in Hbond calculation
by y_atsmonraz » Mon, 2021-10-04 09:16
1
963 by shivarawat115
Mon, 2022-04-11 16:10
Normal topic Problem with AtomPair constraint
by jarek » Tue, 2012-10-09 07:28
1
2,255 by smlewis
Mon, 2014-04-21 06:47
Normal topic BuildPeptide - Using Phosphorylated and Sulfated Tyrosine
by jlawrie » Thu, 2020-09-03 14:29
1
1,216 by cryosky
Mon, 2021-03-01 21:37
Normal topic Symmetry-aware Backrub?
by gamacy » Fri, 2014-11-14 02:18
1
2,050 by rmoretti
Tue, 2014-11-18 09:10
Normal topic Protein Design
by ac.research » Wed, 2017-02-15 19:25
1
2,628 by cdbahl
Sat, 2017-02-18 13:02
Normal topic Abinitio the Broker protocol
by ac.research » Sun, 2019-03-24 03:56
1
1,420 by rmoretti
Fri, 2019-04-05 00:18
Normal topic Issue with Rosetta LinkResidues Script
by adityapadhi » Wed, 2019-11-20 22:00
1
1,231 by JackMaguire
Fri, 2019-11-22 13:45
Normal topic error mesages from RosettaDock
by AlanZhao » Mon, 2011-03-21 11:42
1
2,452 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to run my openmp programe in rosetta3.3?
by lihowe » Mon, 2012-02-27 23:43
1
2,297 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop modeling scoring
by Nicky_Learning_... » Wed, 2015-05-13 20:00
1
2,579 by rmoretti
Mon, 2015-05-25 11:30
Normal topic Using Rmsd RosettaScripts filter with alignment files
by bjharris » Sun, 2020-11-08 15:51
1
990 by rmoretti
Sun, 2020-11-08 18:56
Normal topic connecting rna strands together
by y_atsmonraz » Tue, 2021-11-09 05:42
1
809 by y_atsmonraz
Thu, 2021-11-11 04:51
Normal topic Representing Cross-linked nitrogens
by jjlee2 » Sat, 2011-11-26 18:42
1
2,337 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
1
2,354 by AJVincelli
Sun, 2018-11-25 11:29
Normal topic score_jd2.linuxgccrelease documentation
by fglaser » Mon, 2011-08-01 04:08
1
3,798 by smlewis
Mon, 2014-04-21 06:47
Normal topic Checkpoint with rosetta3.4
by AmelieH » Mon, 2014-12-01 15:51
1
2,468 by rmoretti
Wed, 2014-12-03 19:07
Normal topic Protein Protein Docking with Constraints
by ajaniharesh » Wed, 2019-04-10 07:26
1
1,510 by rmoretti
Thu, 2019-05-09 15:40
Normal topic Resfile as a input for InterfaceAnalyzer
by palak8669 » Sun, 2015-06-07 21:46
1
1,909 by smlewis
Mon, 2015-06-08 06:35
Normal topic Problem in redesign binding site
by armart999 » Fri, 2016-10-14 01:55
1
2,171 by rmoretti
Fri, 2016-10-14 08:42
Normal topic Ligand docking cannot open the protein file
by swarekwood » Tue, 2017-10-17 08:17
1
1,470 by rmoretti
Tue, 2017-10-17 09:03
Normal topic ddG calculations to study point mutations
by N.Chopra » Fri, 2018-12-07 12:36
1
1,935 by jeliazkov
Fri, 2018-12-07 12:51
Normal topic The difference between the H1 regions of modeled camelid antibody and the crystal structure.
by Sunyp_IM » Sun, 2020-06-07 02:34
1
1,166 by nannemdp
Sun, 2020-06-07 08:01
Normal topic cm_scripts
by sn » Wed, 2018-02-14 11:00
1
1,560 by rmoretti
Wed, 2018-02-21 15:21
Normal topic Protein-Protein Docking or Comparative Modeling
by Morrian_Lynn » Wed, 2020-01-29 19:01
1
1,217 by danpf
Fri, 2020-02-21 18:23
Normal topic ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42
by yliang20 » Wed, 2022-06-15 22:22
1
866 by adriancmf25
Thu, 2022-07-28 02:09
Normal topic Rosetta DNA - Protein-DNA scoring function and binding energy
by tanoramb » Tue, 2012-05-08 14:00
1
4,439 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to pick fragments for a transmembrane protein
by tevang » Mon, 2012-05-28 06:52
1
2,144 by tevang
Mon, 2014-04-21 06:47
Normal topic ligand conformer generation for enzyme design
by bo » Mon, 2013-02-11 16:51
1
2,313 by smlewis
Mon, 2014-04-21 06:47
Normal topic Make Fragments
by Run » Mon, 2013-11-11 05:31
1
2,554 by smlewis
Mon, 2014-04-21 06:48
Normal topic debug rosetta_scripts FunFolDes run
by tatsiana.bylund » Sun, 2019-08-18 23:17
1
1,337 by neelamraju.srid...
Wed, 2020-11-18 05:47
Normal topic Python2 script in Rosetta3.13
by ddhoyo » Wed, 2021-09-15 04:05
1
985 by matteoferla
Wed, 2021-09-15 06:04
Normal topic Connecting linkers
by Prasanth Kumar » Tue, 2014-05-06 00:53
1
2,980 by smlewis
Mon, 2014-05-12 08:32
Normal topic Symmetry definition for apolar helix
by vanrooyenjason » Tue, 2016-01-05 05:20
1
3,035 by rmoretti
Fri, 2016-04-29 09:21
Normal topic Sampling a wider range of RMSD of poses by Rosetta Dock
by johnnytam100 » Tue, 2019-05-21 22:28
1
1,412 by johnnytam100
Thu, 2019-05-23 20:52
Normal topic Expected density
by GabrielDucrocq » Thu, 2022-07-14 06:38
1
736 by matteoferla
Wed, 2022-07-20 10:50
Normal topic Creating model of 89-90 residues by ab initio methodology-help
by krlitros87 » Sun, 2014-05-25 12:12
1
2,134 by rmoretti
Mon, 2014-05-26 09:29
Normal topic Membrane ab-initio modelling of a beta-strand
by hzhekova » Mon, 2019-06-10 14:22
1
1,383 by rmoretti
Mon, 2019-06-24 14:39
Normal topic density scoring
by Tianyang89 » Sat, 2020-08-29 04:54
1
1,527 by danpf
Sun, 2020-08-30 22:23
Normal topic Is it possible to restart the ddg_monomer.linuxgccrelease?
by lanselibai » Mon, 2015-09-07 03:46
1
1,957 by rmoretti
Wed, 2015-09-09 12:01
Normal topic Rosetta failed in making score.fsc
by josdee » Sun, 2017-02-05 21:58
1
1,776 by smlewis
Mon, 2017-02-06 06:57
Normal topic different value of score from rna_denovo and rna_score?
by yikanzhang » Wed, 2021-02-03 07:17
1
946 by CameronJA
Tue, 2021-06-15 20:02
Normal topic Difference between relax and mimimize_with_cst
by basvandenberg » Thu, 2012-02-09 00:16
1
2,692 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Alanine Scanning
by gjbartlett » Mon, 2013-08-05 07:02
1
3,466 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Enzyme Design with additional covalent backbone bonds
by mwfranklin » Wed, 2016-08-03 10:23
1
2,324 by rmoretti
Mon, 2016-09-05 11:29
Normal topic Getting error with Rosetta "antibody.linuxgccrelease" command
by Sunyp_IM » Mon, 2017-08-07 19:40
1
2,392 by smlewis
Tue, 2017-08-15 23:19
Normal topic can anyone help me correct this script to do alanine scanning
by xinmiaohe » Mon, 2019-08-26 17:23
1
1,506 by xinmiaohe
Mon, 2019-08-26 18:16
Normal topic rosetta scores for mutated structures
by harshkhare » Wed, 2011-11-23 09:30
1
2,685 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Files for Spatial Constraints
by Derek » Tue, 2016-04-12 01:00
1
1,814 by Derek
Wed, 2016-04-27 01:31
Normal topic Partial Active Site Design for a Novel Substrate
by Derek » Wed, 2017-05-17 19:41
1
1,624 by rmoretti
Thu, 2017-05-18 13:51
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
1
1,708 by rmoretti
Fri, 2018-08-03 08:26
Normal topic kcenters_clustering_of_fragments
by bjharris » Mon, 2019-07-01 16:16
1
1,342 by bjharris
Wed, 2020-07-01 23:25
Normal topic Docking structures with ligands in cryo-EM maps
by galushin » Wed, 2012-07-11 12:40
1
4,447 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
1
2,524 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer "ERROR: seqpos >= 1"
by cossio » Fri, 2015-10-02 12:20
1
2,124 by rmoretti
Fri, 2015-10-02 12:30
Normal topic manually defining CDRs in antibody modelling
by gard.nelson » Fri, 2020-07-10 13:31
1
1,121 by brspurri
Wed, 2021-01-20 08:11
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