You are here

Rosetta 3 - Applications

Topic / Topic starter Repliessort ascending Views Last post
Normal topic Antibody Modelling
by luicui » Mon, 2017-01-23 21:30
1
1,923 by smlewis
Mon, 2017-02-06 20:46
Normal topic blast database error
by jessye » Sun, 2017-12-03 23:59
1
1,509 by smlewis
Mon, 2017-12-04 12:18
Normal topic Comparative modeling
by MRH » Mon, 2013-08-19 23:08
1
2,206 by smlewis
Mon, 2014-04-21 06:48
Normal topic Representing Cross-linked nitrogens
by jjlee2 » Sat, 2011-11-26 18:42
1
2,189 by smlewis
Mon, 2014-04-21 06:47
Normal topic SymDock with constraints
by felipet » Thu, 2015-05-14 09:01
1
2,789 by rmoretti
Mon, 2015-05-25 11:49
Normal topic Predicting the part of protein strcutrue
by ksy141 » Tue, 2018-10-16 11:47
1
1,185 by jadolfbr
Fri, 2018-11-09 14:28
Normal topic /database folder after running "install_dependencies.pl" size 657 GB?
by Danielsebas » Tue, 2019-09-03 03:32
1
1,044 by danpf
Tue, 2019-09-03 10:15
Normal topic Changing rosetta scoring to favour less hydrophobic areas
by daniloboskovic » Thu, 2020-05-21 03:03
1
877 by vmulligan
Thu, 2020-05-21 18:33
Normal topic score_jd2.linuxgccrelease documentation
by fglaser » Mon, 2011-08-01 04:08
1
3,589 by smlewis
Mon, 2014-04-21 06:47
Normal topic trouble in floppytail modelling
by ytao » Thu, 2013-06-27 13:15
1
2,182 by ytao
Mon, 2014-04-21 06:48
Normal topic Executing the clean_pdb.py script
by Rkfoury » Fri, 2015-02-20 10:16
1
3,454 by lanselibai
Tue, 2015-02-24 02:36
Normal topic Enzyme Design - Score File
by nwhoppe » Thu, 2016-04-07 15:11
1
1,823 by rmoretti
Fri, 2016-04-08 07:39
Normal topic Rosetta_cm Partial Threading Removing Parts of Sequence
by gszwabowski » Thu, 2019-06-20 12:30
1
1,300 by rmoretti
Mon, 2019-06-24 13:43
Normal topic Holes output interpretation
by lah435 » Mon, 2012-06-04 15:02
1
2,191 by smlewis
Mon, 2014-04-21 06:47
Normal topic Comparative modeling using a two chained template for a one chain structure
by ahmadkhalifa » Mon, 2017-12-18 11:00
1
1,292 by rmoretti
Mon, 2018-01-15 16:14
Normal topic De novo water predictions using SPaDES
by MNP1986 » Mon, 2019-03-25 07:53
1
1,415 by matteoferla
Tue, 2020-08-04 09:30
Normal topic score and relax
by Prasanth Kumar » Thu, 2013-05-02 05:09
1
3,004 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic relax VS. backrub
by jiongzhang » Mon, 2012-07-02 14:52
1
2,277 by smlewis
Mon, 2014-04-21 06:47
Normal topic JD2 MPI
by jrcf » Wed, 2015-10-28 14:45
1
1,977 by rmoretti
Sat, 2015-10-31 08:57
Normal topic RosettaLigand Docking
by Dinesh Kumar » Mon, 2018-01-15 20:54
1
1,819 by rmoretti
Tue, 2018-01-16 07:24
Normal topic is it necessary to always run relax before any Rosetta
by mainzer » Fri, 2019-04-12 01:35
1
1,527 by rmoretti
Wed, 2019-07-10 09:47
Normal topic How to freeze ligand during FastRelax?
by dnamkr » Thu, 2020-01-02 14:53
1
1,217 by aloshbau
Fri, 2020-01-10 16:48
Normal topic pepspec anchor dock
by Andre Serobian » Tue, 2020-07-28 05:51
1
904 by Andre Serobian
Tue, 2020-07-28 23:26
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
1
1,363 by rmoretti
Tue, 2017-10-10 10:08
Normal topic AbinitioRelax - Error with flags
by jmschu » Wed, 2018-11-21 17:36
1
1,749 by rmoretti
Fri, 2018-11-23 07:59
Normal topic Blast error for rosetta antibody: No argument value given for Query file
by dngusdnr1 » Tue, 2021-06-08 17:30
1
742 by taylorjones
Wed, 2021-06-09 16:38
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:16
1
1,696 by rmoretti
Fri, 2016-06-17 10:24
Normal topic modeling 4 linkers between 2 domains
by pdbb » Thu, 2013-05-16 08:23
1
2,168 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close?
by cossio » Fri, 2014-12-26 13:11
1
1,821 by rmoretti
Tue, 2015-01-13 07:44
Normal topic cluster.linuxgccrelease Killed error
by samuelrpita » Fri, 2015-11-20 05:56
1
2,050 by rmoretti
Tue, 2015-11-24 16:07
Normal topic loop design for Conformational bias
by dhirajks » Thu, 2019-05-09 21:22
1
1,240 by jadolfbr
Fri, 2019-05-10 07:53
Normal topic error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease
by xinmiaohe » Thu, 2020-01-30 22:09
1
1,531 by xinmiaohe
Fri, 2020-01-31 08:23
Normal topic profit program in antibody design
by tzhou » Tue, 2013-10-15 23:29
1
2,535 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Surface accessible residue as a constraint.
by arthuc01 » Fri, 2012-03-09 23:27
1
1,997 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to generate Fragments using up to 2001 structures only
by oppopomoz » Sat, 2015-07-25 00:43
1
1,775 by rmoretti
Thu, 2015-08-06 08:57
Normal topic Can I use rosetta binaries built in one linux system to another linux system?
by Danielsebas » Wed, 2019-09-18 06:49
1
1,129 by rmoretti
Wed, 2019-09-18 10:36
Normal topic [Solved] RosettaAntibody3 - Grafting step is failing to detect H3 from the input sequence
by brspurri » Mon, 2021-01-04 16:46
1
924 by brspurri
Mon, 2021-01-18 18:14
Normal topic PDB file name too long to be handled by file system
by dave » Thu, 2019-08-08 03:10
1
1,033 by rmoretti
Mon, 2019-08-26 12:17
Normal topic minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion
by Kharlamov1317a » Mon, 2020-09-21 08:46
1
1,345 by Kharlamov1317a
Wed, 2020-10-07 08:26
Normal topic Stepwise Monte Carlo - errors with ResidueTypeSet and Disulfides
by user42 » Wed, 2021-07-21 20:34
1
681 by everyday847
Fri, 2021-07-30 13:26
Normal topic Small molecule dimer/trimer/etc docking
by lukasz » Tue, 2022-10-04 06:49
1
1,097 by rmoretti
Tue, 2022-10-04 07:57
Normal topic FlexPepDock in RosettaScripts keeps running
by gw » Tue, 2012-08-21 12:31
1
2,354 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
1,768 by rmoretti
Sat, 2017-04-15 13:30
Normal topic Relax with multiple small molecules
by jharamesh » Sun, 2019-05-26 19:34
1
1,336 by rmoretti
Mon, 2019-06-24 15:19
Normal topic Ddg filter threshold value?
by chrisHKL » Fri, 2020-02-28 15:01
1
933 by rmoretti
Wed, 2020-03-04 09:56
Normal topic shape complementarity
by holdenj » Fri, 2022-07-15 13:24
1
391 by rmoretti
Fri, 2022-07-15 13:50
Normal topic Script for loop modeling: how to define loop sequence
by batch2k » Thu, 2014-10-30 12:58
1
1,932 by jadolfbr
Fri, 2014-10-31 08:45
Normal topic "install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage
by Corvin » Thu, 2019-10-10 02:20
1
1,148 by danpf
Thu, 2019-10-10 09:55
Normal topic How to select docked models
by Sunyp_IM » Mon, 2020-06-22 00:50
1
839 by ssrb
Mon, 2020-06-22 13:12
Normal topic antibody protocol fails
by hamedkhakzad » Mon, 2019-08-19 07:43
1
1,112 by smlewis
Tue, 2019-10-22 09:45
Normal topic Error with FlexPepDock
by aloshbau » Sat, 2013-08-10 11:51
1
2,349 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosetta scores for mutated structures
by harshkhare » Wed, 2011-11-23 09:30
1
2,493 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Snugdock+ensembledock usage
by Anouk » Mon, 2014-09-22 08:09
1
2,684 by jadolfbr
Mon, 2014-10-20 13:42
Normal topic Should I trust the score output from relax used with a protein complex?
by cossio » Thu, 2015-05-07 06:08
1
1,856 by rmoretti
Mon, 2015-05-25 12:37
Normal topic C-termini remodelling of dimeric structure removes second chain
by LeonhardJS » Wed, 2021-10-13 06:23
1
704 by LeonhardJS
Fri, 2021-11-12 01:20
Normal topic interface_delta ligand_docking
by Prasanth Kumar » Tue, 2013-06-18 08:37
1
2,343 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Flexible peptide docking with flexible receptor backbone
by tevang » Fri, 2012-09-14 11:18
1
2,486 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generating non-redundat dataset for loop models
by dario.corrada » Wed, 2016-03-09 03:00
1
1,601 by smlewis
Wed, 2016-03-09 04:11
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
1,615 by rmoretti
Mon, 2017-05-15 08:54
Normal topic rosetta's keyword list
by fred » Tue, 2014-01-21 06:03
1
2,453 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Two questions on the RosettaScripts flexbb-interfacedesign.xml
by johnnytam100 » Fri, 2019-03-15 04:54
1
1,340 by rmoretti
Fri, 2019-03-29 09:58
Normal topic homology membrane modeling demo in rosetta 3.5
by rlwoltz » Mon, 2013-09-09 10:26
1
2,623 by smlewis
Mon, 2014-04-21 06:48
Normal topic Syntax to extract PDB files from a silent file
by lanselibai » Fri, 2014-09-26 13:48
1
3,535 by lanselibai
Fri, 2014-09-26 14:58
Normal topic Using residue patches in AbinitioRelax
by kent » Fri, 2018-11-02 11:19
1
1,509 by rmoretti
Wed, 2018-11-21 15:40
Normal topic membrane modeling error
by benniu2004 » Mon, 2013-07-01 17:59
1
2,234 by smlewis
Mon, 2014-04-21 06:48
Normal topic Failed glycine check when running RosettaRemodel to build disulfide
by cheyuk » Fri, 2014-06-27 02:31
1
1,861 by everyday847
Sun, 2014-09-28 21:16
Normal topic Design a peptide linked to small molecule ligand
by shaunmk » Mon, 2015-03-02 09:05
1
2,215 by rmoretti
Wed, 2015-03-25 12:39
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
1,445 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic protein-protein docking
by cbala » Mon, 2011-04-18 09:15
1
2,324 by smlewis
Mon, 2014-04-21 06:47
Normal topic contents of span file
by tevang » Mon, 2013-04-15 05:01
1
2,293 by smlewis
Mon, 2014-04-21 06:47
Normal topic heads up for constraints using GAUSSIANFUNC
by attesor » Thu, 2015-10-22 07:30
1
1,652 by smlewis
Thu, 2015-10-22 08:04
Normal topic Docking prepack vs. relax
by David Weis » Tue, 2017-02-21 05:37
1
1,705 by smlewis
Tue, 2017-02-21 07:58
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
1
1,417 by Andre Serobian
Wed, 2020-07-08 04:44
Normal topic Options for Enzdes RosettaScripts
by joeg » Wed, 2014-03-12 09:28
1
2,565 by rmoretti
Thu, 2014-03-13 08:04
Normal topic Segmentation fault when running Abinito Relax
by Hongtham » Mon, 2014-12-15 07:16
1
2,803 by rmoretti
Fri, 2015-01-02 11:45
Normal topic Protein/Protein Ddg demo: How to write predicted mutant structures?
by cossio » Wed, 2015-11-04 20:14
1
1,652 by rmoretti
Tue, 2015-11-10 11:10
Normal topic running structure prediction with robetta server like automation
by dhirajks » Mon, 2018-01-29 21:32
1
1,772 by rmoretti
Tue, 2018-01-30 07:51
Normal topic Highly negative total score
by Ruchi_P_Jain » Wed, 2019-04-24 19:55
1
1,349 by nannemdp
Thu, 2019-04-25 07:58
Normal topic mpirun docking_protocol
by NanB » Mon, 2020-08-03 11:38
1
2,176 by ssrb
Fri, 2020-08-14 09:18
Normal topic Full Protocol
by shekhar » Fri, 2013-10-04 01:07
1
2,749 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking with loop rebuilding
by kxiao » Sun, 2015-06-28 19:37
1
1,892 by rmoretti
Fri, 2015-07-03 14:41
Normal topic Ddg_monomer: implementing disulfides
by kabol » Wed, 2016-11-30 02:39
1
1,968 by rmoretti
Wed, 2016-11-30 07:46
Normal topic docking parse error
by dave » Tue, 2018-12-04 08:41
1
1,560 by rmoretti
Tue, 2018-12-04 08:55
Normal topic ERROR: APBS failed to generate the result file.
by bhavranek » Sat, 2021-12-18 11:01
1
643 by bhavranek
Sun, 2021-12-26 21:05
Normal topic FASTA for Octopus
by Smbat » Wed, 2020-09-16 05:40
1
1,090 by rmoretti
Wed, 2020-09-16 22:11
Normal topic Unsatisfied interface H-bond in Ligand docking
by Prasanth Kumar » Thu, 2013-07-18 12:04
1
3,801 by rmoretti
Mon, 2014-04-21 06:48
Normal topic relax job failed
by albumns » Sat, 2014-07-26 00:21
1
1,847 by rmoretti
Sun, 2014-07-27 10:48
Normal topic CartesianRefiner compilation problem
by DmitriiN » Tue, 2015-12-15 08:52
1
1,742 by rmoretti
Tue, 2015-12-15 09:48
Normal topic Modeling-Using RosettaCM
by jlawrie » Wed, 2020-08-12 08:46
1
800 by jlawrie
Wed, 2020-08-12 08:47
Normal topic restrain residues in docking
by albumns » Sat, 2013-11-02 08:52
1
2,355 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic autoNOE peak lists
by aep » Thu, 2015-08-06 06:15
1
1,893 by sgourn
Tue, 2015-08-18 18:25
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
1,563 by smlewis
Mon, 2017-11-13 10:43
Normal topic Energy function and iteration script files
by michelleqyh » Fri, 2019-09-27 09:06
1
987 by smlewis
Fri, 2019-09-27 11:54
Normal topic How does the label in pdb files looks like when using ResiduePDBInfoHasLabel?
by johnnytam100 » Fri, 2019-08-16 00:25
1
1,352 by JackMaguire
Fri, 2019-08-16 07:41
Normal topic Input structure
by Soler » Mon, 2020-09-28 13:18
1
795 by ssrb
Tue, 2020-09-29 12:37
Normal topic Problem in using "loopmodel" application to add missing residues
by sushreet » Wed, 2014-08-27 12:43
1
1,796 by rmoretti
Thu, 2014-08-28 09:42
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Wed, 2016-07-06 10:35
1
1,773 by rmoretti
Tue, 2016-07-12 08:56
Normal topic Question on Designing with NCAAs
by salvatta » Mon, 2018-09-10 10:09
1
1,342 by rmoretti
Thu, 2018-09-20 09:23
Normal topic Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively?
by johnnytam100 » Fri, 2019-08-23 21:10
1
1,028 by rmoretti
Mon, 2019-08-26 12:03
Normal topic trRosetta - Nan occuring in Hbond calculation
by y_atsmonraz » Mon, 2021-10-04 09:16
1
661 by shivarawat115
Mon, 2022-04-11 16:10
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - Applications