You are here
Rosetta 3 - General
Log in to post new content in the forum.
| Topic / Topic starter | Replies | Views |
Last post |
|
|---|---|---|---|---|
|
RosettaDesign by ac.research » Sun, 2019-07-21 01:20 |
2 |
1,661 |
by ac.research Sat, 2019-08-03 08:12 |
|
|
Disulfidize mover by karenjgonzalez » Wed, 2019-07-31 12:35 |
0 |
577 |
by karenjgonzalez Wed, 2019-07-31 12:35 |
|
|
Error in Loop Modeling by sayan500 » Tue, 2019-07-30 22:20 |
0 |
822 |
by sayan500 Tue, 2019-07-30 22:20 |
|
|
rosetta run error by isengupta13 » Thu, 2010-06-03 19:00 |
2 |
1,992 |
by aminzia Fri, 2019-07-26 13:14 |
|
|
MakeRotLib by yinasun » Fri, 2019-07-26 02:17 |
0 |
509 |
by yinasun Fri, 2019-07-26 02:17 |
|
|
How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
1 |
684 |
by rmoretti Tue, 2019-07-09 15:59 |
|
|
The question about FavorNativeResidue by asbelx » Fri, 2019-04-12 20:02 |
1 |
860 |
by rmoretti Tue, 2019-07-09 15:57 |
|
|
How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
1 |
803 |
by rmoretti Tue, 2019-07-09 15:48 |
|
|
how to design binding interface? by Lindsay » Mon, 2013-12-02 19:06 |
8 |
7,946 |
by rmoretti Tue, 2019-07-09 12:50 |
|
|
How to define a theozyme from the .pdb crystal structure without ligand? by weifulei » Mon, 2019-05-20 21:18 |
1 |
895 |
by rmoretti Tue, 2019-07-09 12:31 |
|
|
ERROR: Unable to open weights/patch file by peony » Sun, 2013-11-17 02:49 |
4 |
5,518 |
by rmoretti Tue, 2019-07-09 10:29 |
|
|
Rosetta3 Tutorials by smlewis » Fri, 2011-11-18 07:33 |
8 |
14,200 |
by rmoretti Tue, 2019-07-09 10:24 |
|
|
IS there any source code about protein structure prediction with only sequences information? by ylwang » Mon, 2019-07-08 02:36 |
1 |
804 |
by rmoretti Mon, 2019-07-08 08:05 |
|
|
Mutations are ignored (fixbb) when using -auto_setup_metals option by hdelrisco » Wed, 2019-06-19 15:43 |
1 |
721 |
by smlewis Fri, 2019-06-28 13:56 |
|
|
Hydrogen bond detection and shape complementarity by sujigeorge1979 » Fri, 2019-06-14 02:39 |
3 |
1,292 |
by sujigeorge1979 Thu, 2019-06-27 01:30 |
|
|
InterfaceAnalyzer total score = 0.000 by vmc99 » Wed, 2019-06-12 14:06 |
3 |
1,444 |
by jadolfbr Wed, 2019-06-12 20:17 |
|
|
InterfaceAnalyzer packstat score = 0.000 by vmc99 » Fri, 2018-11-16 11:30 |
11 |
4,460 |
by SenyorDrew Wed, 2019-06-12 14:10 |
|
|
File specification of binary part of silent file (especially PDB section) by m.ebert » Wed, 2019-05-29 01:52 |
1 |
703 |
by smlewis Wed, 2019-05-29 13:21 |
|
|
How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers? by johnnytam100 » Wed, 2019-05-08 02:30 |
2 |
985 |
by johnnytam100 Wed, 2019-05-15 18:45 |
|
|
Memory leak when PDB preparation by Jacky010 » Mon, 2019-05-06 01:28 |
6 |
2,020 |
by Jacky010 Tue, 2019-05-14 01:24 |
|
|
How to use the <CavityVolume> filter in the released version of Rosetta by BioPython » Sun, 2019-05-12 20:07 |
0 |
561 |
by BioPython Sun, 2019-05-12 20:07 |
|
|
Rosetta Antibody cuts off light chain? by ziheng@mit.edu » Thu, 2019-05-02 15:17 |
1 |
773 |
by jeliazkov Fri, 2019-05-03 07:00 |
|
|
LHOC script problem in Rosetta Antibody by ziheng@mit.edu » Thu, 2019-04-25 14:19 |
1 |
785 |
by ziheng@mit.edu Thu, 2019-04-25 14:31 |
|
|
problems with implementing NOE constraints by connyyu » Thu, 2019-04-11 12:37 |
1 |
742 |
by connyyu Thu, 2019-04-18 03:26 |
|
|
protocols.jd2.JobDistributor: [ ERROR ] by johnnytam100 » Thu, 2019-04-11 09:30 |
5 |
2,160 |
by jadolfbr Tue, 2019-04-16 09:15 |
|
|
MSDMover error in RECON protocol by yifeili1983 » Mon, 2019-04-01 00:44 |
2 |
1,018 |
by yifeili1983 Mon, 2019-04-15 22:34 |
|
|
intrensic disrodered proteins by ac.research » Thu, 2019-04-04 07:20 |
1 |
803 |
by vmulligan Mon, 2019-04-08 14:49 |
|
|
Rosetta params for taxol by ahmadkhalifa » Sat, 2019-03-30 22:37 |
1 |
776 |
by rmoretti Wed, 2019-04-03 10:03 |
|
|
perturb_temp flag by Loki01 » Tue, 2018-11-27 05:06 |
2 |
991 |
by rmoretti Wed, 2019-04-03 09:58 |
|
|
Multi-state design with the error "unable to locate database file" by yifeili1983 » Sun, 2019-03-31 18:30 |
1 |
852 |
by rmoretti Wed, 2019-04-03 09:31 |
|
|
Clarify ProteinInterfaceDesign “randomness” by tsztain » Wed, 2019-02-27 09:41 |
3 |
1,221 |
by rmoretti Sat, 2019-03-30 12:12 |
|
|
Denovo prediction from multiple fragment lengths by ahmadkhalifa » Sun, 2019-03-24 03:55 |
1 |
722 |
by rmoretti Sat, 2019-03-30 12:10 |
|
|
Add hemes to cytochrome structures by BuddySphinx » Sun, 2018-12-16 13:46 |
2 |
1,054 |
by rmoretti Fri, 2019-03-29 14:43 |
|
|
Misleading error message by renedominik » Tue, 2019-03-12 01:19 |
1 |
881 |
by vmulligan Tue, 2019-03-26 11:30 |
|
|
alignblast.pl truncated file by rlwoltz » Mon, 2019-03-11 18:32 |
0 |
621 |
by rlwoltz Mon, 2019-03-11 18:32 |
|
|
protein design question by bo » Fri, 2012-08-24 10:41 |
33 |
23,599 |
by jyy Wed, 2019-02-20 00:30 |
|
|
make_fragments.pl by rlwoltz » Fri, 2019-02-01 10:31 |
0 |
929 |
by rlwoltz Fri, 2019-02-01 10:31 |
|
|
Error when using RabD with a nanobody. by zhangying1990 » Mon, 2018-12-17 04:40 |
5 |
2,176 |
by jadolfbr Mon, 2019-01-28 08:46 |
|
|
RosettaMatch Problem by David » Tue, 2019-01-22 12:23 |
0 |
917 |
by David Tue, 2019-01-22 12:23 |
|
|
Errors in Interface_design_demo by zhoubin » Fri, 2019-01-04 13:14 |
0 |
610 |
by zhoubin Fri, 2019-01-04 13:14 |
|
|
protein ligand docking by patrickchirdon » Sun, 2018-12-30 15:07 |
4 |
1,827 |
by smlewis Mon, 2018-12-31 08:58 |
|
|
Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
0 |
496 |
by ahmadkhalifa Fri, 2018-12-28 00:28 |
|
|
Relax output mmCIF file to a particular path by AJVincelli » Sun, 2018-11-25 11:04 |
1 |
800 |
by AJVincelli Sun, 2018-11-25 11:09 |
|
|
Consistent XYZvector length() zero failure in EnzDes by mwfranklin » Thu, 2018-11-01 12:44 |
1 |
879 |
by rmoretti Wed, 2018-11-21 14:14 |
|
|
Iterative local rebuilding vs automated structure refinement by ahmadkhalifa » Fri, 2018-09-14 07:44 |
4 |
1,973 |
by rmoretti Wed, 2018-11-21 14:11 |
|
|
Ab Initio large threshold for clustering by Swillard » Mon, 2018-11-12 14:14 |
1 |
872 |
by rmoretti Wed, 2018-11-21 14:01 |
|
|
Rosetta lack of necessary application by ylwang » Wed, 2018-11-07 01:13 |
3 |
1,476 |
by rmoretti Wed, 2018-11-21 13:50 |
|
|
Is it better to have smaller nstruct but many runs? by Loki01 » Mon, 2018-11-19 11:50 |
3 |
1,353 |
by smlewis Mon, 2018-11-19 13:20 |
|
|
Denovo density didn't output a structure by ahmadkhalifa » Mon, 2018-02-12 08:10 |
3 |
1,667 |
by ylwang Wed, 2018-11-14 03:03 |
|
|
How to minimize only a few key residues' orientation by Ronghai Cheng » Mon, 2018-11-05 18:37 |
2 |
1,352 |
by Ronghai Cheng Tue, 2018-11-13 21:56 |
|
|
Rosetta CM - Ignore Sporadic Errors by Swillard » Wed, 2018-06-13 05:47 |
6 |
2,557 |
by rmoretti Mon, 2018-11-12 14:29 |
|
|
Rosetta-based projects using and licensing by SergeyP » Fri, 2018-10-26 15:45 |
3 |
1,728 |
by SergeyP Mon, 2018-11-12 09:19 |
|
|
Incorporating Rosetta Binary and Database to a Web Server Pipeline by smkim » Fri, 2018-09-28 20:35 |
1 |
1,117 |
by rmoretti Fri, 2018-11-09 12:22 |
|
|
Rosetta script to relax a neighborhood only by matteoferla » Mon, 2018-10-29 03:34 |
1 |
893 |
by jadolfbr Fri, 2018-11-09 09:17 |
|
|
crashed when loading RDC data by yangshen12 » Fri, 2018-10-26 12:34 |
0 |
608 |
by yangshen12 Fri, 2018-10-26 12:34 |
|
|
env energy term by bazzoli » Wed, 2018-10-10 01:59 |
0 |
618 |
by bazzoli Wed, 2018-10-10 01:59 |
|
|
Params file for Methane by dasdevashishdas » Sun, 2018-10-07 21:34 |
1 |
829 |
by rmoretti Mon, 2018-10-08 11:20 |
|
|
Peripheral membrane protein modeling by Fukiishi » Tue, 2018-10-02 02:09 |
3 |
1,639 |
by matteoferla Thu, 2018-10-04 01:30 |
|
|
Constraints use in RosettaCM by a.book » Wed, 2018-10-03 12:11 |
0 |
841 |
by a.book Wed, 2018-10-03 15:56 |
|
|
How to define the surface (???.surf) for surface_docking? by Anpu » Thu, 2018-09-27 07:34 |
0 |
551 |
by Anpu Thu, 2018-09-27 23:36 |
|
|
Is CST_Design required for enzdes protocol? by dasdevashishdas » Mon, 2018-09-03 00:51 |
2 |
1,268 |
by dasdevashishdas Thu, 2018-09-27 03:35 |
|
|
Fluctuations in I_sc by eminegenetics » Thu, 2018-09-13 12:07 |
4 |
1,762 |
by eminegenetics Fri, 2018-09-21 07:42 |
|
|
known disulfides in Remodel sequence by matteoferla » Mon, 2018-09-10 06:43 |
1 |
1,003 |
by matteoferla Thu, 2018-09-13 06:21 |
|
|
Docking tree issues by salvatta » Tue, 2018-07-17 05:57 |
5 |
2,576 |
by salvatta Mon, 2018-09-10 10:04 |
|
|
incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
0 |
628 |
by ela Fri, 2018-08-31 02:53 |
|
|
RosettaCM density guided rebuilding methodology by ahmadkhalifa » Thu, 2018-08-30 06:45 |
4 |
1,750 |
by ahmadkhalifa Thu, 2018-08-30 23:09 |
|
|
Reading chloride anions by Martin Floor » Mon, 2018-08-27 14:29 |
2 |
1,371 |
by Martin Floor Tue, 2018-08-28 13:21 |
|
|
Rosetta CM incorrect threading by ahmadkhalifa » Mon, 2018-08-06 11:09 |
6 |
2,864 |
by rmoretti Fri, 2018-08-24 11:59 |
|
|
Do Rosetta support hydroxide(OH-) and oxide(O2-) params? by dasdevashishdas » Thu, 2018-08-16 21:15 |
2 |
1,223 |
by dasdevashishdas Thu, 2018-08-23 18:02 |
|
|
recommended function type for cross links data by meravb » Sun, 2018-08-05 06:57 |
2 |
1,073 |
by rmoretti Mon, 2018-08-20 11:51 |
|
|
Atomic refinement with fixed ligand by ahmadkhalifa » Tue, 2018-07-24 10:41 |
6 |
2,616 |
by rmoretti Mon, 2018-08-20 11:45 |
|
|
ddG = dGmutant ‐ dGwildtype by ela » Thu, 2018-07-26 09:17 |
3 |
2,102 |
by ela Thu, 2018-08-09 08:04 |
|
|
ab initio struction prediction by Negarsardar » Mon, 2018-08-06 15:50 |
1 |
917 |
by smlewis Tue, 2018-08-07 16:59 |
|
|
Undocumented changes in BackrubDD by abhi_pe_acharya » Mon, 2018-07-16 00:24 |
2 |
1,138 |
by abhi_pe_acharya Sun, 2018-08-05 22:03 |
|
|
rosettaScore.py has a typo, I think. Can I fix it in my own copy? by mdeklotz » Thu, 2018-08-02 15:15 |
4 |
1,842 |
by rmoretti Fri, 2018-08-03 11:39 |
|
|
Rosetta structure refinement alters bound ligand by ahmadkhalifa » Mon, 2018-07-23 07:49 |
1 |
1,005 |
by rmoretti Fri, 2018-08-03 08:59 |
|
|
Propagating the same mutation over "different" chains by mdeklotz » Thu, 2018-07-26 09:27 |
3 |
1,377 |
by rmoretti Fri, 2018-08-03 08:42 |
|
|
Question about FlexPepDock score by aelatico » Thu, 2018-07-19 20:39 |
1 |
918 |
by rmoretti Wed, 2018-08-01 16:04 |
|
|
How did you begin to learn Rosetta? by mdeklotz » Mon, 2018-07-30 10:08 |
1 |
1,193 |
by jkleman Tue, 2018-07-31 13:19 |
|
|
Why I_sc of Rosetta 2016.02 and 2018.21 are so different? by eminegenetics » Mon, 2018-07-16 12:51 |
2 |
1,414 |
by eminegenetics Wed, 2018-07-18 13:48 |
|
|
which make_fragments.pl by renedominik » Mon, 2018-06-04 08:58 |
2 |
1,897 |
by renedominik Sat, 2018-07-07 03:03 |
|
|
Efficient implementation of MPI with protein design programs by zachdebruine » Thu, 2018-06-28 10:41 |
5 |
2,456 |
by smlewis Tue, 2018-07-03 11:22 |
|
|
Free FSC score for validating refinement by ahmadkhalifa » Thu, 2018-05-10 05:53 |
2 |
1,314 |
by ahmadkhalifa Fri, 2018-06-29 07:54 |
|
|
Total Rama Score by jcminerlanl » Thu, 2018-05-10 07:19 |
1 |
1,235 |
by rmoretti Thu, 2018-06-28 14:28 |
|
|
Docking a ligand to two movable domains of a protein by brspurri » Wed, 2018-05-16 08:27 |
1 |
863 |
by rmoretti Thu, 2018-06-28 14:22 |
|
|
Rosetta CM round_thread.pdb doesn't exist and can't find pose (id = round) by ahmadkhalifa » Wed, 2018-05-23 09:51 |
2 |
1,944 |
by rmoretti Thu, 2018-06-28 14:09 |
|
|
Questions regarding fragmentation using Robetta by ahmadkhalifa » Thu, 2018-06-28 13:24 |
1 |
825 |
by smlewis Thu, 2018-06-28 13:34 |
|
|
Amino acid post-translational modifications by aelatico » Tue, 2018-06-19 03:29 |
1 |
1,035 |
by smlewis Tue, 2018-06-19 10:31 |
|
|
ERROR: Unused "free" argument specified: GDP.fa.tors by ahmadkhalifa » Fri, 2018-06-15 11:27 |
10 |
4,382 |
by smlewis Tue, 2018-06-19 09:28 |
|
|
Cannot use SimpleMetrics by Vedasheersh » Sun, 2018-06-10 23:38 |
5 |
2,143 |
by smlewis Tue, 2018-06-12 10:54 |
|
|
Fragments for short peptides using Robetta by renedominik » Wed, 2018-05-16 14:21 |
3 |
1,703 |
by renedominik Mon, 2018-06-04 00:04 |
|
|
solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind by ziqi1234 » Thu, 2018-05-24 02:18 |
0 |
690 |
by ziqi1234 Thu, 2018-05-24 02:18 |
|
|
Problems with "pdb_renumber.py" in tutorial Advanced Protein-Protein Docking by Sunyp_IM » Sun, 2017-06-25 02:40 |
9 |
5,057 |
by ac.research Mon, 2018-05-14 10:20 |
|
|
RosettaDesign improvements by ac.research » Mon, 2018-05-14 08:27 |
0 |
647 |
by ac.research Mon, 2018-05-14 08:27 |
|
|
Mutate multidomain protein by frankfurter1 » Wed, 2018-05-09 04:40 |
0 |
629 |
by frankfurter1 Wed, 2018-05-09 04:40 |
|
|
Denovo density excess map input and segmentation by ahmadkhalifa » Mon, 2018-04-30 07:28 |
0 |
564 |
by ahmadkhalifa Fri, 2018-05-04 07:50 |
|
|
restrict PackRotamersMover by pmit » Thu, 2018-05-03 01:48 |
0 |
579 |
by pmit Thu, 2018-05-03 01:48 |
|
|
Question about CartesianMD by orionshih » Sun, 2018-04-29 21:07 |
2 |
1,122 |
by orionshih Tue, 2018-05-01 21:16 |
|
|
Structure refinement guided by Cryo-EM density maps by ahmadkhalifa » Thu, 2018-03-08 08:22 |
7 |
4,170 |
by ahmadkhalifa Tue, 2018-05-01 09:04 |
|
|
Issue with Loop Analyzer Mover ouput by abhi_pe_acharya » Mon, 2018-04-30 09:55 |
2 |
1,103 |
by abhi_pe_acharya Mon, 2018-04-30 22:54 |
Log in to post new content in the forum.
