You are here

Rosetta 3 - General

Topic / Topic starter Replies Views Last postsort ascending
Normal topic Error on rna_denovo_setup.py
by zahra_AZ » Mon, 2020-11-09 02:23
0
763 by zahra_AZ
Mon, 2020-11-09 02:23
Normal topic Chain specific flags
by helenah » Mon, 2020-10-19 03:31
5
2,118 by rmoretti
Fri, 2020-11-06 08:04
Normal topic Problems with Cterm_amidation.txt
by helenah » Thu, 2020-10-08 04:52
8
3,487 by helenah
Tue, 2020-11-03 04:33
Normal topic Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex
by Sunidhi » Sun, 2020-11-01 11:00
0
647 by Sunidhi
Sun, 2020-11-01 11:01
Normal topic location of define_interface.py
by rohi » Mon, 2020-10-26 19:42
1
1,011 by rmoretti
Mon, 2020-10-26 19:52
Normal topic Extracting PDBs from a Silent file: "Can't find residue type for ARG"
by avsrivatsa » Sat, 2020-10-17 16:20
2
1,237 by avsrivatsa
Mon, 2020-10-19 18:16
Normal topic using full atom constraint in docking
by rohi » Thu, 2020-10-15 10:28
0
764 by rohi
Thu, 2020-10-15 10:28
Normal topic Score function: unable to open input_files/1qys.pdb
by Cyrrusm » Tue, 2020-10-13 11:35
1
995 by rmoretti
Tue, 2020-10-13 11:40
Normal topic analyzing the protein protein docking without native structure
by rohi » Sun, 2020-10-11 20:42
2
1,235 by rohi
Tue, 2020-10-13 09:15
Normal topic loop modelling on complex structure
by Tianyang89 » Fri, 2020-09-18 07:24
1
992 by amelie.stein
Mon, 2020-09-28 10:41
Normal topic I used mpirun/mpiexec and it runs same job 32times
by leygkn » Mon, 2020-09-21 00:53
6
2,838 by jadolfbr
Thu, 2020-09-24 10:04
Normal topic RosettaRemodel gives no increased output when setting higher -num_trajectory
by JW_24 » Tue, 2020-09-22 11:49
2
1,178 by JW_24
Wed, 2020-09-23 01:27
Normal topic Error with simple_cycpep_predict protocol while using a native pdb file
by Florent Langenfeld » Tue, 2019-03-26 10:05
3
1,894 by Florent Langenfeld
Tue, 2020-09-22 03:03
Normal topic CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group
by ZhijunW » Thu, 2020-09-03 18:36
11
4,244 by matteoferla
Sat, 2020-09-12 03:02
Normal topic 4mer 6mer fragment database
by bjharris » Wed, 2020-09-09 15:12
2
1,352 by bjharris
Wed, 2020-09-09 20:04
Normal topic RosettaCM: help to generate similar models as those from Robetta Server
by haom » Wed, 2020-09-09 09:19
0
739 by haom
Wed, 2020-09-09 09:19
Normal topic what factors determine the lowest (best) LigInterfaceEnergy score?
by jmaly » Wed, 2020-08-26 13:07
0
781 by jmaly
Wed, 2020-09-02 16:16
Normal topic How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates)
by haom » Tue, 2020-09-01 13:21
0
676 by haom
Tue, 2020-09-01 18:50
Normal topic RosettaCM: adding constraints while keeping AUTO constraints
by Michele.Bonus » Sun, 2020-08-30 10:42
2
1,317 by Michele.Bonus
Sun, 2020-08-30 23:06
Normal topic Error: Element 'RandomizeBBByRamaPrePro': This element is not expected.
by nferruz » Fri, 2020-08-28 06:04
0
701 by nferruz
Fri, 2020-08-28 06:05
Normal topic Compile C++ Rosetta to Pyrosetta ERROR
by michelleqyh » Fri, 2020-08-21 09:00
0
659 by michelleqyh
Fri, 2020-08-21 09:00
Normal topic DockingProtocol mover ensemble error
by dfcoelho » Tue, 2018-10-16 08:32
2
2,038 by brspurri
Thu, 2020-08-20 13:22
Normal topic selecting pivot_residue in Backrub for ensemble generation
by rohi » Fri, 2020-08-07 15:41
6
2,929 by matteoferla
Tue, 2020-08-11 10:00
Normal topic Controlling Input in the Tutorial
by Smbat » Wed, 2020-07-29 22:41
2
1,236 by Smbat
Thu, 2020-07-30 03:07
Normal topic type of docking
by rohi » Mon, 2020-07-06 06:55
11
5,639 by rohi
Sun, 2020-07-26 17:03
Normal topic Gaussian Constraint For Dihedrals
by jinli711 » Thu, 2020-07-23 10:47
1
1,019 by matteoferla
Fri, 2020-07-24 03:06
Normal topic Quick mysql output question
by pedro.guillem » Thu, 2020-07-23 03:45
0
584 by pedro.guillem
Thu, 2020-07-23 03:45
Normal topic I made a params file generation webpage
by matteoferla » Wed, 2020-07-22 03:08
0
669 by matteoferla
Wed, 2020-07-22 03:08
Normal topic This element is not expected.
by ac.research » Fri, 2017-10-13 03:47
6
5,901 by vmulligan
Thu, 2020-07-16 23:31
Normal topic "Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))"
by matteoferla » Tue, 2020-07-14 01:51
0
865 by matteoferla
Tue, 2020-07-14 01:51
Normal topic Make fragments
by jeanramos » Mon, 2020-07-13 00:56
0
623 by jeanramos
Mon, 2020-07-13 00:56
Normal topic where is PyIgClassfiy.py ?
by mxp » Tue, 2020-07-07 23:57
2
1,252 by mxp
Wed, 2020-07-08 23:25
Normal topic Questions about alanine scanning in Rosetta
by LTJ » Mon, 2020-07-06 14:13
0
715 by LTJ
Mon, 2020-07-06 14:13
Normal topic simple_cycpep_predict issue modifying terminal residue
by JEaston » Thu, 2020-06-25 13:15
1
1,006 by vmulligan
Mon, 2020-06-29 13:09
Normal topic Unrecognized atom parameter with denovo_density
by kalabharath » Mon, 2020-06-29 06:59
0
691 by kalabharath
Mon, 2020-06-29 06:59
Normal topic str::out_of_range with mpiexec and relax
by pedro.guillem » Fri, 2020-06-19 10:39
1
1,332 by pedro.guillem
Wed, 2020-06-24 04:49
Normal topic BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set
by pedro.guillem » Wed, 2020-05-13 18:31
0
667 by pedro.guillem
Wed, 2020-06-24 04:42
Normal topic Setting output values using a database (with relax app)
by pedro.guillem » Thu, 2020-05-14 04:33
1
1,043 by pedro.guillem
Wed, 2020-06-24 04:41
Normal topic Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol
by adityapadhi » Wed, 2020-06-24 01:29
0
649 by adityapadhi
Wed, 2020-06-24 01:29
Normal topic patch file modification for ser_phosphorylated.txt
by hajar » Sun, 2020-06-21 00:49
1
1,144 by matteoferla
Tue, 2020-06-23 10:58
Normal topic How to create a native file for Protein-Protein docking
by Kotimedidhi » Mon, 2020-06-22 08:10
0
618 by Kotimedidhi
Mon, 2020-06-22 08:10
Normal topic Ligand docking: how to generate the crystal_complex.pdb with hydrogens added
by nhinguyen26 » Wed, 2020-06-17 15:03
1
1,033 by matteoferla
Sat, 2020-06-20 03:56
Normal topic error when using script best_ifaceE.py
by windmill » Thu, 2020-06-18 21:30
1
915 by windmill
Thu, 2020-06-18 21:32
Normal topic Structure refinement for helical assembles using Rosetta
by xiaoyanzi » Thu, 2020-06-18 00:34
0
725 by xiaoyanzi
Thu, 2020-06-18 00:36
Normal topic Clustering error - Help, please
by karolcia1010 » Wed, 2020-06-17 11:19
0
654 by karolcia1010
Wed, 2020-06-17 11:19
Normal topic reading of AtomPair failed in relax with constraint
by hajar » Wed, 2020-06-10 10:02
0
983 by hajar
Wed, 2020-06-10 11:17
Normal topic Difference between interface_delta_X and dG_separated?
by Nicole Deng » Sat, 2020-06-06 06:31
0
842 by Nicole Deng
Sat, 2020-06-06 06:40
Normal topic Method for WebServer Fragment Generation
by Jacob_Verburgt » Tue, 2020-06-02 07:29
2
1,502 by Jacob_Verburgt
Tue, 2020-06-02 10:26
Normal topic Protein Interface Design using PSSM
by ccruz » Sun, 2020-05-24 14:27
1
1,408 by nannemdp
Tue, 2020-05-26 06:33
Normal topic Error in molfile_to_params_polymer.py for NCAA
by kkuo33 » Mon, 2020-05-18 16:41
1
1,231 by matteoferla
Sat, 2020-05-23 03:09
Normal topic Side-chain grafting in fixed scaffold
by Kazu » Wed, 2020-05-20 08:45
0
757 by Kazu
Wed, 2020-05-20 11:58
Normal topic Errors in Interface design  
by Kazu » Thu, 2019-10-31 17:48
4
2,310 by Kazu
Mon, 2020-05-18 10:52
Normal topic Error in flex ddG tutorial
by wentlewi » Sat, 2020-05-16 08:06
0
1,119 by wentlewi
Sat, 2020-05-16 08:06
Normal topic How to specify constraints during fold-and-dock?
by sarah_b » Tue, 2020-05-12 01:55
3
1,815 by matteoferla
Thu, 2020-05-14 07:01
Normal topic Output "per-residue" energy score to database
by pedro.guillem » Thu, 2020-05-14 04:22
0
622 by pedro.guillem
Thu, 2020-05-14 04:22
Normal topic Error with filter in rosseta_scripts
by Osmany Guirola » Mon, 2020-05-11 04:52
0
683 by Osmany Guirola
Mon, 2020-05-11 04:52
Normal topic I made a RDKit Chem.Mol to params converter — feedback welcome!
by matteoferla » Sun, 2020-05-03 10:14
1
1,321 by jadolfbr
Sun, 2020-05-03 19:38
Normal topic "caught exception" for PDB with membrane "DUM" residues
by nitroamos » Wed, 2018-05-30 08:35
2
3,079 by Awagner7
Tue, 2020-04-28 10:51
Normal topic error in mol2 to params conversion for GAliganddocking
by jalan » Wed, 2020-04-22 06:08
2
1,411 by jalan
Thu, 2020-04-23 05:19
Normal topic ligand docking error
by YuFei » Wed, 2020-04-22 17:27
0
707 by YuFei
Wed, 2020-04-22 17:27
Normal topic use_truncated_termini not working in combination with params files
by georg » Thu, 2020-03-26 13:14
1
1,021 by matteoferla
Tue, 2020-04-14 03:36
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:18
2
1,653 by jalan
Sun, 2020-04-12 08:01
Normal topic Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1"
by Xinhang » Sat, 2020-04-11 14:30
1
1,198 by vmulligan
Sat, 2020-04-11 17:40
Normal topic Correct way to force a specific histidine tautomer
by matteoferla » Fri, 2020-04-10 02:40
0
857 by matteoferla
Fri, 2020-04-10 02:40
Normal topic Is there other online server for generate fragment?
by ylwang » Wed, 2020-04-01 01:39
1
1,087 by rmoretti
Wed, 2020-04-01 10:10
Normal topic I got so many atoms in one residue
by ylwang » Tue, 2020-03-24 04:40
3
1,530 by ylwang
Tue, 2020-03-24 19:35
Normal topic SARS-CoV-2: call for compound predictions against protease
by matteoferla » Sun, 2020-03-22 05:29
0
771 by matteoferla
Sun, 2020-03-22 05:29
Normal topic I generated a table of images & info of the premade NCAA params in the database
by matteoferla » Sun, 2020-02-16 06:27
4
2,244 by matteoferla
Sat, 2020-03-21 09:14
Normal topic NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken
by Jacob_Verburgt » Tue, 2020-03-10 08:58
6
3,971 by Jacob_Verburgt
Wed, 2020-03-11 05:18
Normal topic Rosetta changing Atom Name in PDB ATOM record?
by chrisHKL » Tue, 2020-03-03 20:50
1
1,084 by smlewis
Wed, 2020-03-04 07:40
Normal topic Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)?
by thaisarns » Fri, 2020-02-21 05:46
1
999 by sheehajh
Fri, 2020-02-21 12:41
Normal topic Does it make sense to perform Docking on a complex?
by chrisHKL » Mon, 2020-02-17 09:12
0
679 by chrisHKL
Mon, 2020-02-17 09:12
Normal topic Job Distribution Error
by ac.research » Mon, 2020-02-10 08:22
2
1,470 by ac.research
Fri, 2020-02-14 23:33
Normal topic Error in src/protocols/membrane/util.cc line: 1224
by renedominik » Tue, 2020-02-11 08:10
1
1,072 by renedominik
Wed, 2020-02-12 06:16
Normal topic DesignByCavityProximity: element not expected
by karenjgonzalez » Tue, 2020-01-28 05:16
4
2,053 by karenjgonzalez
Tue, 2020-02-11 08:44
Normal topic Rosetta job distribution error
by ss » Thu, 2019-08-01 09:26
8
4,220 by ac.research
Mon, 2020-02-10 08:19
Normal topic MotifGraft error: "Residue connection id changed when creating a new residue at seqpos"
by dfcoelho » Mon, 2020-02-03 11:09
1
1,174 by dfcoelho
Tue, 2020-02-04 07:45
Normal topic What is the best way to make a residue-specific SASA constraint?
by jmaly » Thu, 2020-01-23 16:40
2
1,660 by matteoferla
Wed, 2020-01-29 12:18
Normal topic Working through tutorials: expected output scorces differ from calculated results
by j.schmue » Sat, 2020-01-18 13:16
2
1,316 by j.schmue
Tue, 2020-01-28 13:31
Normal topic Rosetta Resfile header
by G Mustafa » Mon, 2020-01-20 06:45
2
1,544 by G Mustafa
Tue, 2020-01-21 06:04
Normal topic mpi + mp_mutate_relax
by decrSTL » Thu, 2020-01-16 10:47
1
1,164 by jkleman
Thu, 2020-01-16 11:05
Normal topic Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size
by dasdevashishdas » Fri, 2018-10-12 00:55
1
1,321 by jyy
Mon, 2020-01-13 17:19
Normal topic What is the best protocol to predict the missing residues in X-ray crystallisation?
by lanselibai » Sun, 2019-12-29 04:44
1
1,016 by matteoferla
Wed, 2020-01-01 04:30
Normal topic Seasons greetings with a Christmas tree shaped protein
by matteoferla » Sun, 2019-12-22 03:37
4
2,255 by matteoferla
Mon, 2019-12-23 07:24
Normal topic Rosetta Antibody: Unable to open file and terminates
by denatured » Thu, 2019-12-12 11:26
1
1,857 by denatured
Fri, 2019-12-13 11:19
Normal topic Performace Benchmarking
by Tushar Kush » Wed, 2019-12-04 02:50
2
1,775 by smlewis
Wed, 2019-12-04 13:07
Normal topic Does Rosetta have a class diagram for each class in the source code?
by ylwang » Thu, 2019-11-21 04:24
3
1,767 by ylwang
Sat, 2019-11-23 06:26
Normal topic Docking Metalloprotein-Protein
by fgomes » Fri, 2019-11-22 19:12
0
886 by fgomes
Fri, 2019-11-22 19:12
Normal topic Ddg calculation for a metalloprotein using APBS
by dfcoelho » Tue, 2019-11-19 10:06
2
1,261 by dfcoelho
Wed, 2019-11-20 05:39
Normal topic Is cis-Glycine okay?
by matteoferla » Tue, 2019-11-19 07:26
5
2,547 by matteoferla
Wed, 2019-11-20 02:32
Normal topic protein surface design
by tatsiana.bylund » Sun, 2019-09-15 03:44
2
1,464 by dfcoelho
Tue, 2019-11-19 10:16
Normal topic AbInitioRelax.mpi Hangs - Waiting for Job Request
by nleroy » Thu, 2019-10-31 07:30
2
1,592 by nleroy
Fri, 2019-11-08 12:44
Normal topic Can I thread a two chained structure in RosettaCM?
by ahmadkhalifa » Mon, 2018-01-08 09:41
3
2,780 by aaxx
Wed, 2019-11-06 01:44
Normal topic Error in Hybridize of Rosetta Comparative Modeling.
by Ivan » Fri, 2019-11-01 07:46
1
1,026 by rmoretti
Mon, 2019-11-04 12:54
Normal topic De novo density assembly weights don't add up to a 100
by ahmadkhalifa » Fri, 2018-08-03 12:07
3
1,917 by rmoretti
Tue, 2019-10-22 07:05
Normal topic Does Rosetta have a separate refinement function?
by ylwang » Tue, 2019-09-24 19:08
2
1,553 by ylwang
Tue, 2019-10-08 18:34
Normal topic Ab initio structure prediction for long amino acid sequence
by maruhuang » Fri, 2019-08-02 03:38
4
2,219 by maruhuang
Thu, 2019-09-26 18:55
Normal topic how to perform model quality assessment of rosetta generated models?
by Danielsebas » Tue, 2019-09-24 05:03
0
736 by Danielsebas
Tue, 2019-09-24 05:03
Normal topic How to get fragment library from robetta server for mre than 1000 residue sequence?
by Danielsebas » Wed, 2019-09-18 07:53
1
1,145 by rmoretti
Wed, 2019-09-18 10:49
Normal topic Ligand question - aromatic bonds not being enforced?
by Rick_Baker » Wed, 2019-09-11 09:08
1
1,150 by Rick_Baker
Wed, 2019-09-11 15:35
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - General