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Rosetta 3 - General
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Error on rna_denovo_setup.py by zahra_AZ » Mon, 2020-11-09 02:23 |
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763 |
by zahra_AZ Mon, 2020-11-09 02:23 |
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Chain specific flags by helenah » Mon, 2020-10-19 03:31 |
5 |
2,118 |
by rmoretti Fri, 2020-11-06 08:04 |
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Problems with Cterm_amidation.txt by helenah » Thu, 2020-10-08 04:52 |
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3,487 |
by helenah Tue, 2020-11-03 04:33 |
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Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex by Sunidhi » Sun, 2020-11-01 11:00 |
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647 |
by Sunidhi Sun, 2020-11-01 11:01 |
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location of define_interface.py by rohi » Mon, 2020-10-26 19:42 |
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1,011 |
by rmoretti Mon, 2020-10-26 19:52 |
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Extracting PDBs from a Silent file: "Can't find residue type for ARG" by avsrivatsa » Sat, 2020-10-17 16:20 |
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1,237 |
by avsrivatsa Mon, 2020-10-19 18:16 |
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using full atom constraint in docking by rohi » Thu, 2020-10-15 10:28 |
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764 |
by rohi Thu, 2020-10-15 10:28 |
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Score function: unable to open input_files/1qys.pdb by Cyrrusm » Tue, 2020-10-13 11:35 |
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995 |
by rmoretti Tue, 2020-10-13 11:40 |
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analyzing the protein protein docking without native structure by rohi » Sun, 2020-10-11 20:42 |
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1,235 |
by rohi Tue, 2020-10-13 09:15 |
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loop modelling on complex structure by Tianyang89 » Fri, 2020-09-18 07:24 |
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992 |
by amelie.stein Mon, 2020-09-28 10:41 |
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I used mpirun/mpiexec and it runs same job 32times by leygkn » Mon, 2020-09-21 00:53 |
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2,838 |
by jadolfbr Thu, 2020-09-24 10:04 |
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RosettaRemodel gives no increased output when setting higher -num_trajectory by JW_24 » Tue, 2020-09-22 11:49 |
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1,178 |
by JW_24 Wed, 2020-09-23 01:27 |
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Error with simple_cycpep_predict protocol while using a native pdb file by Florent Langenfeld » Tue, 2019-03-26 10:05 |
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1,894 |
by Florent Langenfeld Tue, 2020-09-22 03:03 |
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CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group by ZhijunW » Thu, 2020-09-03 18:36 |
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4,244 |
by matteoferla Sat, 2020-09-12 03:02 |
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4mer 6mer fragment database by bjharris » Wed, 2020-09-09 15:12 |
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1,352 |
by bjharris Wed, 2020-09-09 20:04 |
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RosettaCM: help to generate similar models as those from Robetta Server by haom » Wed, 2020-09-09 09:19 |
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739 |
by haom Wed, 2020-09-09 09:19 |
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what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
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781 |
by jmaly Wed, 2020-09-02 16:16 |
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How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates) by haom » Tue, 2020-09-01 13:21 |
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676 |
by haom Tue, 2020-09-01 18:50 |
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RosettaCM: adding constraints while keeping AUTO constraints by Michele.Bonus » Sun, 2020-08-30 10:42 |
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1,317 |
by Michele.Bonus Sun, 2020-08-30 23:06 |
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Error: Element 'RandomizeBBByRamaPrePro': This element is not expected. by nferruz » Fri, 2020-08-28 06:04 |
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701 |
by nferruz Fri, 2020-08-28 06:05 |
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Compile C++ Rosetta to Pyrosetta ERROR by michelleqyh » Fri, 2020-08-21 09:00 |
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659 |
by michelleqyh Fri, 2020-08-21 09:00 |
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DockingProtocol mover ensemble error by dfcoelho » Tue, 2018-10-16 08:32 |
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2,038 |
by brspurri Thu, 2020-08-20 13:22 |
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selecting pivot_residue in Backrub for ensemble generation by rohi » Fri, 2020-08-07 15:41 |
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2,929 |
by matteoferla Tue, 2020-08-11 10:00 |
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Controlling Input in the Tutorial by Smbat » Wed, 2020-07-29 22:41 |
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1,236 |
by Smbat Thu, 2020-07-30 03:07 |
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type of docking by rohi » Mon, 2020-07-06 06:55 |
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5,639 |
by rohi Sun, 2020-07-26 17:03 |
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Gaussian Constraint For Dihedrals by jinli711 » Thu, 2020-07-23 10:47 |
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1,019 |
by matteoferla Fri, 2020-07-24 03:06 |
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Quick mysql output question by pedro.guillem » Thu, 2020-07-23 03:45 |
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584 |
by pedro.guillem Thu, 2020-07-23 03:45 |
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I made a params file generation webpage by matteoferla » Wed, 2020-07-22 03:08 |
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669 |
by matteoferla Wed, 2020-07-22 03:08 |
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This element is not expected. by ac.research » Fri, 2017-10-13 03:47 |
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5,901 |
by vmulligan Thu, 2020-07-16 23:31 |
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"Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))" by matteoferla » Tue, 2020-07-14 01:51 |
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865 |
by matteoferla Tue, 2020-07-14 01:51 |
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Make fragments by jeanramos » Mon, 2020-07-13 00:56 |
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623 |
by jeanramos Mon, 2020-07-13 00:56 |
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where is PyIgClassfiy.py ? by mxp » Tue, 2020-07-07 23:57 |
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1,252 |
by mxp Wed, 2020-07-08 23:25 |
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Questions about alanine scanning in Rosetta by LTJ » Mon, 2020-07-06 14:13 |
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715 |
by LTJ Mon, 2020-07-06 14:13 |
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simple_cycpep_predict issue modifying terminal residue by JEaston » Thu, 2020-06-25 13:15 |
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1,006 |
by vmulligan Mon, 2020-06-29 13:09 |
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Unrecognized atom parameter with denovo_density by kalabharath » Mon, 2020-06-29 06:59 |
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691 |
by kalabharath Mon, 2020-06-29 06:59 |
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str::out_of_range with mpiexec and relax by pedro.guillem » Fri, 2020-06-19 10:39 |
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1,332 |
by pedro.guillem Wed, 2020-06-24 04:49 |
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BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set by pedro.guillem » Wed, 2020-05-13 18:31 |
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667 |
by pedro.guillem Wed, 2020-06-24 04:42 |
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Setting output values using a database (with relax app) by pedro.guillem » Thu, 2020-05-14 04:33 |
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1,043 |
by pedro.guillem Wed, 2020-06-24 04:41 |
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Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
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649 |
by adityapadhi Wed, 2020-06-24 01:29 |
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patch file modification for ser_phosphorylated.txt by hajar » Sun, 2020-06-21 00:49 |
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1,144 |
by matteoferla Tue, 2020-06-23 10:58 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Mon, 2020-06-22 08:10 |
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618 |
by Kotimedidhi Mon, 2020-06-22 08:10 |
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Ligand docking: how to generate the crystal_complex.pdb with hydrogens added by nhinguyen26 » Wed, 2020-06-17 15:03 |
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1,033 |
by matteoferla Sat, 2020-06-20 03:56 |
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error when using script best_ifaceE.py by windmill » Thu, 2020-06-18 21:30 |
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915 |
by windmill Thu, 2020-06-18 21:32 |
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Structure refinement for helical assembles using Rosetta by xiaoyanzi » Thu, 2020-06-18 00:34 |
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725 |
by xiaoyanzi Thu, 2020-06-18 00:36 |
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Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
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654 |
by karolcia1010 Wed, 2020-06-17 11:19 |
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reading of AtomPair failed in relax with constraint by hajar » Wed, 2020-06-10 10:02 |
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983 |
by hajar Wed, 2020-06-10 11:17 |
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Difference between interface_delta_X and dG_separated? by Nicole Deng » Sat, 2020-06-06 06:31 |
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842 |
by Nicole Deng Sat, 2020-06-06 06:40 |
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Method for WebServer Fragment Generation by Jacob_Verburgt » Tue, 2020-06-02 07:29 |
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1,502 |
by Jacob_Verburgt Tue, 2020-06-02 10:26 |
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Protein Interface Design using PSSM by ccruz » Sun, 2020-05-24 14:27 |
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1,408 |
by nannemdp Tue, 2020-05-26 06:33 |
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Error in molfile_to_params_polymer.py for NCAA by kkuo33 » Mon, 2020-05-18 16:41 |
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1,231 |
by matteoferla Sat, 2020-05-23 03:09 |
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Side-chain grafting in fixed scaffold by Kazu » Wed, 2020-05-20 08:45 |
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757 |
by Kazu Wed, 2020-05-20 11:58 |
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Errors in Interface design by Kazu » Thu, 2019-10-31 17:48 |
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2,310 |
by Kazu Mon, 2020-05-18 10:52 |
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Error in flex ddG tutorial by wentlewi » Sat, 2020-05-16 08:06 |
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1,119 |
by wentlewi Sat, 2020-05-16 08:06 |
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How to specify constraints during fold-and-dock? by sarah_b » Tue, 2020-05-12 01:55 |
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1,815 |
by matteoferla Thu, 2020-05-14 07:01 |
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Output "per-residue" energy score to database by pedro.guillem » Thu, 2020-05-14 04:22 |
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622 |
by pedro.guillem Thu, 2020-05-14 04:22 |
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Error with filter in rosseta_scripts by Osmany Guirola » Mon, 2020-05-11 04:52 |
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683 |
by Osmany Guirola Mon, 2020-05-11 04:52 |
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I made a RDKit Chem.Mol to params converter — feedback welcome! by matteoferla » Sun, 2020-05-03 10:14 |
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1,321 |
by jadolfbr Sun, 2020-05-03 19:38 |
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"caught exception" for PDB with membrane "DUM" residues by nitroamos » Wed, 2018-05-30 08:35 |
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3,079 |
by Awagner7 Tue, 2020-04-28 10:51 |
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error in mol2 to params conversion for GAliganddocking by jalan » Wed, 2020-04-22 06:08 |
2 |
1,411 |
by jalan Thu, 2020-04-23 05:19 |
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ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
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707 |
by YuFei Wed, 2020-04-22 17:27 |
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use_truncated_termini not working in combination with params files by georg » Thu, 2020-03-26 13:14 |
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1,021 |
by matteoferla Tue, 2020-04-14 03:36 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:18 |
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1,653 |
by jalan Sun, 2020-04-12 08:01 |
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Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1" by Xinhang » Sat, 2020-04-11 14:30 |
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1,198 |
by vmulligan Sat, 2020-04-11 17:40 |
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Correct way to force a specific histidine tautomer by matteoferla » Fri, 2020-04-10 02:40 |
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857 |
by matteoferla Fri, 2020-04-10 02:40 |
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Is there other online server for generate fragment? by ylwang » Wed, 2020-04-01 01:39 |
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1,087 |
by rmoretti Wed, 2020-04-01 10:10 |
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I got so many atoms in one residue by ylwang » Tue, 2020-03-24 04:40 |
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1,530 |
by ylwang Tue, 2020-03-24 19:35 |
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SARS-CoV-2: call for compound predictions against protease by matteoferla » Sun, 2020-03-22 05:29 |
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771 |
by matteoferla Sun, 2020-03-22 05:29 |
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I generated a table of images & info of the premade NCAA params in the database by matteoferla » Sun, 2020-02-16 06:27 |
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2,244 |
by matteoferla Sat, 2020-03-21 09:14 |
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NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken by Jacob_Verburgt » Tue, 2020-03-10 08:58 |
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3,971 |
by Jacob_Verburgt Wed, 2020-03-11 05:18 |
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Rosetta changing Atom Name in PDB ATOM record? by chrisHKL » Tue, 2020-03-03 20:50 |
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1,084 |
by smlewis Wed, 2020-03-04 07:40 |
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Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)? by thaisarns » Fri, 2020-02-21 05:46 |
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999 |
by sheehajh Fri, 2020-02-21 12:41 |
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Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
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679 |
by chrisHKL Mon, 2020-02-17 09:12 |
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Job Distribution Error by ac.research » Mon, 2020-02-10 08:22 |
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1,470 |
by ac.research Fri, 2020-02-14 23:33 |
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Error in src/protocols/membrane/util.cc line: 1224 by renedominik » Tue, 2020-02-11 08:10 |
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1,072 |
by renedominik Wed, 2020-02-12 06:16 |
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DesignByCavityProximity: element not expected by karenjgonzalez » Tue, 2020-01-28 05:16 |
4 |
2,053 |
by karenjgonzalez Tue, 2020-02-11 08:44 |
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Rosetta job distribution error by ss » Thu, 2019-08-01 09:26 |
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4,220 |
by ac.research Mon, 2020-02-10 08:19 |
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MotifGraft error: "Residue connection id changed when creating a new residue at seqpos" by dfcoelho » Mon, 2020-02-03 11:09 |
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1,174 |
by dfcoelho Tue, 2020-02-04 07:45 |
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What is the best way to make a residue-specific SASA constraint? by jmaly » Thu, 2020-01-23 16:40 |
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1,660 |
by matteoferla Wed, 2020-01-29 12:18 |
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Working through tutorials: expected output scorces differ from calculated results by j.schmue » Sat, 2020-01-18 13:16 |
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1,316 |
by j.schmue Tue, 2020-01-28 13:31 |
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Rosetta Resfile header by G Mustafa » Mon, 2020-01-20 06:45 |
2 |
1,544 |
by G Mustafa Tue, 2020-01-21 06:04 |
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mpi + mp_mutate_relax by decrSTL » Thu, 2020-01-16 10:47 |
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1,164 |
by jkleman Thu, 2020-01-16 11:05 |
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Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size by dasdevashishdas » Fri, 2018-10-12 00:55 |
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1,321 |
by jyy Mon, 2020-01-13 17:19 |
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What is the best protocol to predict the missing residues in X-ray crystallisation? by lanselibai » Sun, 2019-12-29 04:44 |
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1,016 |
by matteoferla Wed, 2020-01-01 04:30 |
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Seasons greetings with a Christmas tree shaped protein by matteoferla » Sun, 2019-12-22 03:37 |
4 |
2,255 |
by matteoferla Mon, 2019-12-23 07:24 |
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Rosetta Antibody: Unable to open file and terminates by denatured » Thu, 2019-12-12 11:26 |
1 |
1,857 |
by denatured Fri, 2019-12-13 11:19 |
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Performace Benchmarking by Tushar Kush » Wed, 2019-12-04 02:50 |
2 |
1,775 |
by smlewis Wed, 2019-12-04 13:07 |
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Does Rosetta have a class diagram for each class in the source code? by ylwang » Thu, 2019-11-21 04:24 |
3 |
1,767 |
by ylwang Sat, 2019-11-23 06:26 |
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Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
0 |
886 |
by fgomes Fri, 2019-11-22 19:12 |
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Ddg calculation for a metalloprotein using APBS by dfcoelho » Tue, 2019-11-19 10:06 |
2 |
1,261 |
by dfcoelho Wed, 2019-11-20 05:39 |
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Is cis-Glycine okay? by matteoferla » Tue, 2019-11-19 07:26 |
5 |
2,547 |
by matteoferla Wed, 2019-11-20 02:32 |
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protein surface design by tatsiana.bylund » Sun, 2019-09-15 03:44 |
2 |
1,464 |
by dfcoelho Tue, 2019-11-19 10:16 |
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AbInitioRelax.mpi Hangs - Waiting for Job Request by nleroy » Thu, 2019-10-31 07:30 |
2 |
1,592 |
by nleroy Fri, 2019-11-08 12:44 |
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Can I thread a two chained structure in RosettaCM? by ahmadkhalifa » Mon, 2018-01-08 09:41 |
3 |
2,780 |
by aaxx Wed, 2019-11-06 01:44 |
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Error in Hybridize of Rosetta Comparative Modeling. by Ivan » Fri, 2019-11-01 07:46 |
1 |
1,026 |
by rmoretti Mon, 2019-11-04 12:54 |
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De novo density assembly weights don't add up to a 100 by ahmadkhalifa » Fri, 2018-08-03 12:07 |
3 |
1,917 |
by rmoretti Tue, 2019-10-22 07:05 |
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Does Rosetta have a separate refinement function? by ylwang » Tue, 2019-09-24 19:08 |
2 |
1,553 |
by ylwang Tue, 2019-10-08 18:34 |
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Ab initio structure prediction for long amino acid sequence by maruhuang » Fri, 2019-08-02 03:38 |
4 |
2,219 |
by maruhuang Thu, 2019-09-26 18:55 |
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how to perform model quality assessment of rosetta generated models? by Danielsebas » Tue, 2019-09-24 05:03 |
0 |
736 |
by Danielsebas Tue, 2019-09-24 05:03 |
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How to get fragment library from robetta server for mre than 1000 residue sequence? by Danielsebas » Wed, 2019-09-18 07:53 |
1 |
1,145 |
by rmoretti Wed, 2019-09-18 10:49 |
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Ligand question - aromatic bonds not being enforced? by Rick_Baker » Wed, 2019-09-11 09:08 |
1 |
1,150 |
by Rick_Baker Wed, 2019-09-11 15:35 |
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