You are here

Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic PDB file name too long to be handled by file system
by dave » Thu, 2019-08-08 03:10
1
797 by rmoretti
Mon, 2019-08-26 12:17
Normal topic DDG and interaction score problem
by a-eatemadi@razi... » Mon, 2018-04-09 22:54
0
797 by a-eatemadi@razi...
Mon, 2018-04-09 22:54
Normal topic remodel ERROR: unrecognized mm_atom_type_name RGU
by daniloboskovic » Sat, 2020-02-22 11:55
1
808 by daniloboskovic
Tue, 2020-02-25 08:28
Normal topic DDG_monomer ΔΔG question
by asbelx » Fri, 2018-04-20 03:31
0
817 by asbelx
Fri, 2018-04-20 03:33
Normal topic RosettaCM
by jlawrie » Fri, 2020-08-14 14:09
0
822 by jlawrie
Fri, 2020-08-14 14:09
Normal topic FASTA for Octopus
by Smbat » Wed, 2020-09-16 05:40
1
822 by rmoretti
Wed, 2020-09-16 22:11
Normal topic Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively?
by johnnytam100 » Fri, 2019-08-23 21:10
1
824 by rmoretti
Mon, 2019-08-26 12:03
Normal topic Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo
by zharmad » Fri, 2019-08-23 01:16
1
825 by everyday847
Fri, 2019-08-23 04:08
Normal topic /database folder after running "install_dependencies.pl" size 657 GB?
by Danielsebas » Tue, 2019-09-03 03:32
1
829 by danpf
Tue, 2019-09-03 10:15
Normal topic get an increased energy after energy minimization when using different score functions for repacking and energy minimization
by xinmiaohe » Fri, 2020-02-07 11:59
1
830 by xinmiaohe
Fri, 2020-02-07 13:52
Normal topic Error: in membrane docking : Cannot split pose by membrane jump! Quitting...
by Astghik » Tue, 2020-11-24 05:27
2
832 by Astghik
Thu, 2020-12-03 02:35
Normal topic Protein-Protein Docking or Comparative Modeling
by Morrian_Lynn » Wed, 2020-01-29 19:01
1
834 by danpf
Fri, 2020-02-21 18:23
Normal topic fixing sequence during grafting in antibody_designer
by COM » Fri, 2020-01-24 11:38
1
844 by jadolfbr
Tue, 2020-01-28 09:13
Normal topic how to know the precedure of solving a actural bio problem? like interface design?
by qq7678500549 » Thu, 2020-08-06 18:45
2
844 by qq7678500549
Sun, 2020-08-09 18:59
Normal topic FlexPepDock Multi chain receptor
by evo_umich » Mon, 2018-04-02 12:13
0
847 by evo_umich
Mon, 2018-04-02 12:13
Normal topic Strong bias in sampling observed in RosettaDock
by chenna » Thu, 2020-08-27 22:23
2
848 by chenna
Tue, 2021-10-12 20:51
Normal topic Issue with Rosetta LinkResidues Script
by adityapadhi » Wed, 2019-11-20 22:00
1
849 by JackMaguire
Fri, 2019-11-22 13:45
Normal topic where is generate_ligens.linuxgccrelease?
by Nicole Deng » Thu, 2020-12-03 00:00
2
851 by Nicole Deng
Fri, 2020-12-18 00:28
Normal topic Error when trying docking protocol with different ligand
by scyphs » Wed, 2020-08-05 04:37
2
852 by scyphs
Mon, 2020-08-10 08:09
Normal topic How to analyse multiple silent files from "Abinitiorelax" output to find best models?
by Danielsebas » Tue, 2019-09-10 10:01
1
860 by smlewis
Mon, 2019-09-16 12:22
Normal topic Rosetta Ligand Ensemble
by malfonsoprieto » Wed, 2021-05-26 10:21
3
860 by vizcarra
Thu, 2021-08-26 10:16
Normal topic Robetta ab initio - TrRosetta for membrane proteins
by benhardy » Wed, 2020-09-30 08:42
0
861 by benhardy
Wed, 2020-09-30 08:42
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
0
862 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
0
870 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic density scoring
by Tianyang89 » Sat, 2020-08-29 04:54
1
871 by danpf
Sun, 2020-08-30 22:23
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
0
879 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic Can I use rosetta binaries built in one linux system to another linux system?
by Danielsebas » Wed, 2019-09-18 06:49
1
884 by rmoretti
Wed, 2019-09-18 10:36
Normal topic antibody protocol fails
by hamedkhakzad » Mon, 2019-08-19 07:43
1
885 by smlewis
Tue, 2019-10-22 09:45
Normal topic AddHelixSequenceConstraints Mover2
by Negarsardar » Sat, 2019-06-01 01:54
1
887 by vmulligan
Thu, 2019-06-13 15:01
Normal topic Docking-RMS value nan
by jlawrie » Wed, 2020-08-12 07:03
2
889 by jlawrie
Wed, 2020-08-12 07:27
Normal topic The relax qustion of Rosetta VIP
by asbelx » Mon, 2019-06-10 07:52
1
891 by rmoretti
Mon, 2019-06-24 14:42
Normal topic denovo modelling on a virus-coat protein dimer
by aseem121 » Wed, 2019-10-16 06:55
1
897 by danpf
Wed, 2019-10-16 13:03
Normal topic hbond_sr_bb and hbond_lr_bb for different chains
by tylerborrman » Tue, 2020-10-13 13:41
2
905 by tylerborrman
Tue, 2021-02-09 16:33
Normal topic Successful RosettaCM?
by jlawrie » Wed, 2020-08-19 06:53
2
906 by jlawrie
Thu, 2020-08-20 11:00
Normal topic Thread target sequence
by duz » Thu, 2021-04-01 10:09
4
908 by duz
Mon, 2021-05-03 07:50
Normal topic LoopModeler mover unable to determine cut point
by gszwabowski » Mon, 2020-06-01 13:12
1
910 by matteoferla
Thu, 2020-07-02 07:27
Normal topic Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease
by bdzhh » Tue, 2019-09-17 17:02
1
910 by jadolfbr
Thu, 2019-09-19 08:53
Normal topic Loop modeling with constraints
by agctomer » Sat, 2021-03-20 03:53
3
923 by agctomer
Thu, 2021-04-08 07:37
Normal topic "install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage
by Corvin » Thu, 2019-10-10 02:20
1
931 by danpf
Thu, 2019-10-10 09:55
Normal topic debug rosetta_scripts FunFolDes run
by tatsiana.bylund » Sun, 2019-08-18 23:17
1
935 by neelamraju.srid...
Wed, 2020-11-18 05:47
Normal topic RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow?
by brspurri » Thu, 2020-05-14 11:15
2
936 by brspurri
Thu, 2020-05-14 12:24
Normal topic ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator>
by DGR95 » Fri, 2021-04-16 19:26
4
936 by DGR95
Wed, 2021-04-28 16:13
Normal topic hybrid approach - comparative and ab initio modelling
by eprates » Wed, 2019-03-20 11:58
1
937 by rmoretti
Fri, 2019-03-29 09:45
Normal topic pmut_scan_parallel
by G Mustafa » Wed, 2018-10-17 05:41
0
940 by G Mustafa
Wed, 2018-10-17 05:41
Normal topic RosettaScripts filter BuriedUnsatHbonds2 missing still
by zdaw » Fri, 2020-12-11 12:39
3
940 by zdaw
Tue, 2020-12-15 15:38
Normal topic RNA modeling with step wise Monte Carlo error
by szcshr123 » Mon, 2020-12-07 18:08
3
946 by everyday847
Wed, 2020-12-09 21:46
Normal topic Scoring docking error
by almeida85 » Wed, 2020-09-02 01:32
2
950 by almeida85
Wed, 2020-09-02 06:14
Normal topic kcenters_clustering_of_fragments
by bjharris » Mon, 2019-07-01 16:16
1
952 by bjharris
Wed, 2020-07-01 23:25
Normal topic how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot?
by Danielsebas » Tue, 2019-09-24 03:51
1
955 by smlewis
Tue, 2019-09-24 12:43
Normal topic PDB moves after relaxing
by Hr13b » Fri, 2018-07-27 13:12
1
959 by smlewis
Fri, 2018-07-27 13:32
Normal topic input file for loop modeling
by Negarsardar » Tue, 2019-04-16 10:21
1
963 by rmoretti
Tue, 2019-04-16 11:07
Normal topic ligand_docking ligand preparation
by Alison_Yajie » Thu, 2020-05-21 10:21
2
965 by Alison_Yajie
Wed, 2020-06-24 12:38
Normal topic Docking-I_sc values do not correlate
by jlawrie » Wed, 2020-08-12 08:08
2
968 by jlawrie
Wed, 2020-08-12 08:57
Normal topic minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion
by Kharlamov1317a » Mon, 2020-09-21 08:46
1
968 by Kharlamov1317a
Wed, 2020-10-07 08:26
Normal topic protein interction design
by Negarsardar » Wed, 2019-05-15 12:01
1
970 by rmoretti
Wed, 2019-07-10 09:24
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
0
970 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic How to create a native file for Protein-Protein docking
by Kotimedidhi » Fri, 2020-06-19 08:58
2
970 by Kotimedidhi
Mon, 2020-06-22 16:19
Normal topic Predicting the part of protein strcutrue
by ksy141 » Tue, 2018-10-16 11:47
1
972 by jadolfbr
Fri, 2018-11-09 14:28
Normal topic not knowing which one of three ways to run rosettascript
by xinmiaohe » Tue, 2020-10-13 13:52
2
974 by xinmiaohe
Mon, 2020-10-19 13:18
Normal topic ProteinInterfaceMS
by rbjacob » Wed, 2018-10-24 11:31
1
978 by rmoretti
Wed, 2018-11-21 15:10
Normal topic Abinitio the Broker protocol
by ac.research » Sun, 2019-03-24 03:56
1
981 by rmoretti
Fri, 2019-04-05 00:18
Normal topic Modelling temperature dependent RNA structures
by tuleshwori » Tue, 2020-05-19 01:16
2
982 by tuleshwori
Thu, 2020-05-21 02:08
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
0
982 by ac.research
Mon, 2017-01-09 00:59
Normal topic Number of max allowed mutations from WT sequence
by mouung » Fri, 2020-09-04 02:33
2
985 by amorin
Fri, 2021-02-12 08:53
Normal topic How to freeze ligand during FastRelax?
by dnamkr » Thu, 2020-01-02 14:53
1
988 by aloshbau
Fri, 2020-01-10 16:48
Normal topic Homology Modeling-no PDB output
by jlawrie » Wed, 2020-08-12 06:30
2
990 by jlawrie
Wed, 2020-08-12 08:56
Normal topic Sampling a wider range of RMSD of poses by Rosetta Dock
by johnnytam100 » Tue, 2019-05-21 22:28
1
992 by johnnytam100
Thu, 2019-05-23 20:52
Normal topic Membrane ab-initio modelling of a beta-strand
by hzhekova » Mon, 2019-06-10 14:22
1
994 by rmoretti
Mon, 2019-06-24 14:39
Normal topic Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1
by cm21 » Wed, 2020-05-20 08:55
2
997 by cm21
Wed, 2020-05-20 11:22
Normal topic "Angle constraint: 0-length bonds" error
by purvi24 » Sun, 2019-07-28 10:09
1
997 by rmoretti
Mon, 2019-08-26 12:49
Normal topic docking with capping groups
by xavierfradera » Sun, 2018-11-04 16:17
1
999 by maral.adeli-kou...
Wed, 2020-01-22 12:41
Normal topic nstruct vs. trials?
by chrisHKL » Mon, 2020-03-02 13:22
2
1,002 by chrisHKL
Wed, 2020-03-04 10:49
Normal topic "core.kinematics.FoldTree" error upon running RAbD
by Sunyp_IM » Fri, 2020-06-26 17:27
2
1,009 by Sunyp_IM
Fri, 2020-06-26 20:57
Normal topic loop design for Conformational bias
by dhirajks » Thu, 2019-05-09 21:22
1
1,016 by jadolfbr
Fri, 2019-05-10 07:53
Normal topic BUG REPORT: Remodel Resfile ERROR: LEU was added more than once?
by daniloboskovic » Wed, 2020-04-29 01:17
2
1,022 by daniloboskovic
Wed, 2020-04-29 05:51
Normal topic Usage of the TaskOperations "RestrictToCDRsAndNeighbors"
by johnnytam100 » Wed, 2019-04-10 02:58
1
1,025 by rmoretti
Wed, 2019-07-10 10:10
Normal topic Threading with Ligand
by ekwan » Thu, 2018-12-06 15:10
1
1,032 by rmoretti
Fri, 2019-03-29 13:21
Normal topic Question on restraining receptor symmetry when docking ligand
by subha » Fri, 2018-07-06 21:59
1
1,033 by rmoretti
Fri, 2018-08-03 08:16
Normal topic Rosetta antibody- modeling in the presense of an antigen
by agctomer » Mon, 2021-02-01 03:19
4
1,042 by nannemdp
Wed, 2021-02-03 08:52
Normal topic Protein Protein Docking with Constraints
by ajaniharesh » Wed, 2019-04-10 07:26
1
1,043 by rmoretti
Thu, 2019-05-09 15:40
Normal topic Error with Formatdb of legacy blast when running "install_dependencies.pl"?
by Danielsebas » Mon, 2019-09-16 09:30
2
1,049 by Danielsebas
Tue, 2019-09-17 01:03
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
0
1,053 by yigallah
Mon, 2014-12-15 08:46
Normal topic crazy loopmodel: linear output pdbs
by fred » Wed, 2014-12-03 12:27
0
1,053 by fred
Wed, 2014-12-03 12:28
Normal topic Rosetta scripts crash in CM workflow
by jlburkhead » Tue, 2019-12-03 22:55
1
1,056 by danpf
Fri, 2020-02-21 18:37
Normal topic can anyone help me correct this script to do alanine scanning
by xinmiaohe » Mon, 2019-08-26 17:23
1
1,059 by xinmiaohe
Mon, 2019-08-26 18:16
Normal topic wallpaper symmetry definition file
by aaj » Fri, 2016-02-26 08:40
0
1,063 by aaj
Fri, 2016-02-26 08:40
Normal topic Rosetta_cm Partial Threading Removing Parts of Sequence
by gszwabowski » Thu, 2019-06-20 12:30
1
1,068 by rmoretti
Mon, 2019-06-24 13:43
Normal topic broker domain insertion
by dhirajks » Sun, 2018-05-06 12:55
1
1,070 by rmoretti
Fri, 2018-05-18 12:28
Normal topic FloppyTail as a rosettascripts file
by tiagogomes89 » Mon, 2015-01-19 02:45
0
1,073 by tiagogomes89
Mon, 2015-01-19 02:45
Normal topic Relaxing protein-RNA complexes
by rkirchdo » Fri, 2018-08-03 08:50
1
1,076 by rmoretti
Fri, 2018-08-24 11:28
Normal topic Coding denovo prediction from density maps in PyRosetta
by ahmadkhalifa » Tue, 2018-04-10 11:43
1
1,077 by rmoretti
Tue, 2018-04-10 15:29
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
0
1,078 by felipet
Wed, 2014-07-02 10:23
Normal topic change number of output pose files written out (default=50) in ligand docking XML script
by hdelrisco » Fri, 2019-10-18 13:50
2
1,078 by hdelrisco
Fri, 2019-10-18 17:16
Normal topic make_fragments.pl error
by almeida85 » Mon, 2020-08-31 04:39
2
1,079 by almeida85
Tue, 2020-09-01 01:29
Normal topic Any progress on getting intermediate structures during a design?
by broomsday » Mon, 2020-03-16 06:46
2
1,081 by vmulligan
Tue, 2020-03-17 11:35
Normal topic OptimizeMembranePositionMover - This element is not expected
by bjharris » Wed, 2020-07-01 23:21
2
1,088 by bjharris
Thu, 2020-07-02 11:09
Normal topic Ligand docking cannot open the protein file
by swarekwood » Tue, 2017-10-17 08:17
1
1,088 by rmoretti
Tue, 2017-10-17 09:03
Normal topic Comparative modeling using a two chained template for a one chain structure
by ahmadkhalifa » Mon, 2017-12-18 11:00
1
1,089 by rmoretti
Mon, 2018-01-15 16:14
Normal topic antibody.linuxgccrelease- output models don't have the same sequence as the input fasta
by agctomer » Thu, 2021-01-21 15:35
4
1,092 by agctomer
Sun, 2021-01-31 01:06
Normal topic Relax with RDC data gives segmentation fault
by sn » Mon, 2018-07-23 11:39
1
1,093 by rmoretti
Fri, 2018-08-03 07:54
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - Applications