You are here

Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic AddHelixSequenceConstraints Mover2
by Negarsardar » Sat, 2019-06-01 01:54
1
747 by vmulligan
Thu, 2019-06-13 15:01
Normal topic denovo modelling on a virus-coat protein dimer
by aseem121 » Wed, 2019-10-16 06:55
1
748 by danpf
Wed, 2019-10-16 13:03
Normal topic Number of max allowed mutations from WT sequence
by mouung » Fri, 2020-09-04 02:33
2
752 by amorin
Fri, 2021-02-12 08:53
Normal topic Docking-I_sc values do not correlate
by jlawrie » Wed, 2020-08-12 08:08
2
755 by jlawrie
Wed, 2020-08-12 08:57
Normal topic not knowing which one of three ways to run rosettascript
by xinmiaohe » Tue, 2020-10-13 13:52
2
755 by xinmiaohe
Mon, 2020-10-19 13:18
Normal topic RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow?
by brspurri » Thu, 2020-05-14 11:15
2
756 by brspurri
Thu, 2020-05-14 12:24
Normal topic FlexPepDock Multi chain receptor
by evo_umich » Mon, 2018-04-02 12:13
0
762 by evo_umich
Mon, 2018-04-02 12:13
Normal topic Scoring docking error
by almeida85 » Wed, 2020-09-02 01:32
2
764 by almeida85
Wed, 2020-09-02 06:14
Normal topic The relax qustion of Rosetta VIP
by asbelx » Mon, 2019-06-10 07:52
1
764 by rmoretti
Mon, 2019-06-24 14:42
Normal topic Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease
by bdzhh » Tue, 2019-09-17 17:02
1
765 by jadolfbr
Thu, 2019-09-19 08:53
Normal topic antibody.linuxgccrelease- output models don't have the same sequence as the input fasta
by agctomer » Thu, 2021-01-21 15:35
4
767 by agctomer
Sun, 2021-01-31 01:06
Normal topic how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot?
by Danielsebas » Tue, 2019-09-24 03:51
1
771 by smlewis
Tue, 2019-09-24 12:43
Normal topic "install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage
by Corvin » Thu, 2019-10-10 02:20
1
775 by danpf
Thu, 2019-10-10 09:55
Normal topic Homology Modeling-no PDB output
by jlawrie » Wed, 2020-08-12 06:30
2
777 by jlawrie
Wed, 2020-08-12 08:56
Normal topic Modelling temperature dependent RNA structures
by tuleshwori » Tue, 2020-05-19 01:16
2
780 by tuleshwori
Thu, 2020-05-21 02:08
Normal topic kcenters_clustering_of_fragments
by bjharris » Mon, 2019-07-01 16:16
1
785 by bjharris
Wed, 2020-07-01 23:25
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
0
788 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
0
789 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic ligand_docking ligand preparation
by Alison_Yajie » Thu, 2020-05-21 10:21
2
790 by Alison_Yajie
Wed, 2020-06-24 12:38
Normal topic debug rosetta_scripts FunFolDes run
by tatsiana.bylund » Sun, 2019-08-18 23:17
1
792 by neelamraju.srid...
Wed, 2020-11-18 05:47
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
0
794 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic How to create a native file for Protein-Protein docking
by Kotimedidhi » Fri, 2020-06-19 08:58
2
795 by Kotimedidhi
Mon, 2020-06-22 16:19
Normal topic "core.kinematics.FoldTree" error upon running RAbD
by Sunyp_IM » Fri, 2020-06-26 17:27
2
804 by Sunyp_IM
Fri, 2020-06-26 20:57
Normal topic Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1
by cm21 » Wed, 2020-05-20 08:55
2
813 by cm21
Wed, 2020-05-20 11:22
Normal topic nstruct vs. trials?
by chrisHKL » Mon, 2020-03-02 13:22
2
816 by chrisHKL
Wed, 2020-03-04 10:49
Normal topic pmut_scan_parallel
by G Mustafa » Wed, 2018-10-17 05:41
0
817 by G Mustafa
Wed, 2018-10-17 05:41
Normal topic make_fragments.pl error
by almeida85 » Mon, 2020-08-31 04:39
2
820 by almeida85
Tue, 2020-09-01 01:29
Normal topic BUG REPORT: Remodel Resfile ERROR: LEU was added more than once?
by daniloboskovic » Wed, 2020-04-29 01:17
2
820 by daniloboskovic
Wed, 2020-04-29 05:51
Normal topic Can rosetta generate a centroid model based on the rna sequence?
by yels » Fri, 2021-03-26 04:06
7
829 by yels
Wed, 2021-03-31 18:31
Normal topic hybrid approach - comparative and ab initio modelling
by eprates » Wed, 2019-03-20 11:58
1
829 by rmoretti
Fri, 2019-03-29 09:45
Normal topic Predicting the part of protein strcutrue
by ksy141 » Tue, 2018-10-16 11:47
1
832 by jadolfbr
Fri, 2018-11-09 14:28
Normal topic protein interction design
by Negarsardar » Wed, 2019-05-15 12:01
1
835 by rmoretti
Wed, 2019-07-10 09:24
Normal topic ProteinInterfaceMS
by rbjacob » Wed, 2018-10-24 11:31
1
838 by rmoretti
Wed, 2018-11-21 15:10
Normal topic How to freeze ligand during FastRelax?
by dnamkr » Thu, 2020-01-02 14:53
1
839 by aloshbau
Fri, 2020-01-10 16:48
Normal topic Abinitio the Broker protocol
by ac.research » Sun, 2019-03-24 03:56
1
839 by rmoretti
Fri, 2019-04-05 00:18
Normal topic "Angle constraint: 0-length bonds" error
by purvi24 » Sun, 2019-07-28 10:09
1
840 by rmoretti
Mon, 2019-08-26 12:49
Normal topic input file for loop modeling
by Negarsardar » Tue, 2019-04-16 10:21
1
841 by rmoretti
Tue, 2019-04-16 11:07
Normal topic Sampling a wider range of RMSD of poses by Rosetta Dock
by johnnytam100 » Tue, 2019-05-21 22:28
1
844 by johnnytam100
Thu, 2019-05-23 20:52
Normal topic PDB moves after relaxing
by Hr13b » Fri, 2018-07-27 13:12
1
844 by smlewis
Fri, 2018-07-27 13:32
Normal topic issues about cstfile in RosettaMatch
by Nicole Deng » Fri, 2020-12-18 05:44
3
846 by He Xiao
Sun, 2021-04-11 19:29
Normal topic Membrane ab-initio modelling of a beta-strand
by hzhekova » Mon, 2019-06-10 14:22
1
850 by rmoretti
Mon, 2019-06-24 14:39
Normal topic Error with Formatdb of legacy blast when running "install_dependencies.pl"?
by Danielsebas » Mon, 2019-09-16 09:30
2
856 by Danielsebas
Tue, 2019-09-17 01:03
Normal topic Any progress on getting intermediate structures during a design?
by broomsday » Mon, 2020-03-16 06:46
2
856 by vmulligan
Tue, 2020-03-17 11:35
Normal topic docking with capping groups
by xavierfradera » Sun, 2018-11-04 16:17
1
862 by maral.adeli-kou...
Wed, 2020-01-22 12:41
Normal topic OptimizeMembranePositionMover - This element is not expected
by bjharris » Wed, 2020-07-01 23:21
2
864 by bjharris
Thu, 2020-07-02 11:09
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
0
872 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic Usage of the TaskOperations "RestrictToCDRsAndNeighbors"
by johnnytam100 » Wed, 2019-04-10 02:58
1
880 by rmoretti
Wed, 2019-07-10 10:10
Normal topic Protein Protein Docking with Constraints
by ajaniharesh » Wed, 2019-04-10 07:26
1
881 by rmoretti
Thu, 2019-05-09 15:40
Normal topic VH-VL Orientation in antibody
by sujigeorge1979 » Mon, 2019-06-17 01:23
1
883 by jeliazkov
Mon, 2019-06-17 06:03
Normal topic loop design for Conformational bias
by dhirajks » Thu, 2019-05-09 21:22
1
885 by jadolfbr
Fri, 2019-05-10 07:53
Normal topic Threading with Ligand
by ekwan » Thu, 2018-12-06 15:10
1
885 by rmoretti
Fri, 2019-03-29 13:21
Normal topic can anyone help me correct this script to do alanine scanning
by xinmiaohe » Mon, 2019-08-26 17:23
1
887 by xinmiaohe
Mon, 2019-08-26 18:16
Normal topic change number of output pose files written out (default=50) in ligand docking XML script
by hdelrisco » Fri, 2019-10-18 13:50
2
888 by hdelrisco
Fri, 2019-10-18 17:16
Normal topic The usage of antibody_H3.linuxgccrelease
by Sunyp_IM » Thu, 2020-05-28 22:50
2
889 by Sunyp_IM
Thu, 2020-06-04 08:20
Normal topic Can't generate a cst file to use with ddg_monomer application
by ctqwong » Sat, 2021-03-13 03:53
6
889 by ctqwong
Thu, 2021-03-18 02:04
Normal topic Rosetta scripts crash in CM workflow
by jlburkhead » Tue, 2019-12-03 22:55
1
896 by danpf
Fri, 2020-02-21 18:37
Normal topic RosettaCM or FastRelax?
by Tianyang89 » Wed, 2020-09-23 07:46
3
901 by danpf
Thu, 2020-09-24 13:44
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
0
905 by ac.research
Mon, 2017-01-09 00:59
Normal topic Question on restraining receptor symmetry when docking ligand
by subha » Fri, 2018-07-06 21:59
1
912 by rmoretti
Fri, 2018-08-03 08:16
Normal topic Rosetta_cm Partial Threading Removing Parts of Sequence
by gszwabowski » Thu, 2019-06-20 12:30
1
913 by rmoretti
Mon, 2019-06-24 13:43
Normal topic Prevention of the negatively charged Nitrogen protonation by coupled_moves
by Corvin » Wed, 2020-11-18 02:56
4
919 by Corvin
Wed, 2020-11-25 02:58
Normal topic Is native.pdb necess for fragment_picker?
by ylwang » Thu, 2020-03-12 00:57
2
919 by ylwang
Thu, 2020-03-12 20:42
Normal topic How does the label in pdb files looks like when using ResiduePDBInfoHasLabel?
by johnnytam100 » Fri, 2019-08-16 00:25
1
921 by JackMaguire
Fri, 2019-08-16 07:41
Normal topic Relax with multiple small molecules
by jharamesh » Sun, 2019-05-26 19:34
1
922 by rmoretti
Mon, 2019-06-24 15:19
Normal topic missing atom number 5 atom name CB
by ajaniharesh » Fri, 2019-04-26 12:08
1
928 by rmoretti
Fri, 2019-04-26 12:13
Normal topic Remodel: the pose does not have residue with chain=H, PDBnum=114
by lanselibai » Wed, 2019-12-25 13:35
1
936 by lanselibai
Fri, 2019-12-27 09:38
Normal topic broker domain insertion
by dhirajks » Sun, 2018-05-06 12:55
1
936 by rmoretti
Fri, 2018-05-18 12:28
Normal topic relax.linuxgccrelease in multiple processors
by jpfuenzalidawx » Thu, 2021-01-14 14:07
5
937 by jadolfbr
Fri, 2021-01-15 08:06
Normal topic Ligand docking cannot open the protein file
by swarekwood » Tue, 2017-10-17 08:17
1
939 by rmoretti
Tue, 2017-10-17 09:03
Normal topic Centroid mode minimization
by Martin Floor » Tue, 2020-01-21 07:34
2
940 by Martin Floor
Tue, 2020-01-21 11:15
Normal topic Relaxing protein-RNA complexes
by rkirchdo » Fri, 2018-08-03 08:50
1
941 by rmoretti
Fri, 2018-08-24 11:28
Normal topic ligand docking with MPI
by Ruska322 » Wed, 2019-09-04 03:47
2
943 by Ruska322
Fri, 2019-09-06 07:13
Normal topic Coding denovo prediction from density maps in PyRosetta
by ahmadkhalifa » Tue, 2018-04-10 11:43
1
945 by rmoretti
Tue, 2018-04-10 15:29
Normal topic Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex
by benhardy » Mon, 2020-06-15 09:33
3
950 by benhardy
Fri, 2020-06-19 07:55
Normal topic AddHelixSequenceConstraints Mover
by Negarsardar » Thu, 2019-05-30 03:17
2
952 by vmulligan
Thu, 2019-06-13 14:59
Normal topic Highly negative total score
by Ruchi_P_Jain » Wed, 2019-04-24 19:55
1
963 by nannemdp
Thu, 2019-04-25 07:58
Normal topic Imitating induced fit protocol in SymDock2 without any symmetry constraints
by chenna » Fri, 2020-02-14 01:35
2
966 by chenna
Wed, 2020-03-04 03:24
Normal topic Relax with RDC data gives segmentation fault
by sn » Mon, 2018-07-23 11:39
1
968 by rmoretti
Fri, 2018-08-03 07:54
Normal topic crazy loopmodel: linear output pdbs
by fred » Wed, 2014-12-03 12:27
0
969 by fred
Wed, 2014-12-03 12:28
Normal topic Two questions on the RosettaScripts flexbb-interfacedesign.xml
by johnnytam100 » Fri, 2019-03-15 04:54
1
969 by rmoretti
Fri, 2019-03-29 09:58
Normal topic Question on Designing with NCAAs
by salvatta » Mon, 2018-09-10 10:09
1
969 by rmoretti
Thu, 2018-09-20 09:23
Normal topic De novo water predictions using SPaDES
by MNP1986 » Mon, 2019-03-25 07:53
1
972 by matteoferla
Tue, 2020-08-04 09:30
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
0
976 by yigallah
Mon, 2014-12-15 08:46
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
978 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic How to run partial_thread in RosettaCM when residure are more than 9999?
by lanselibai » Mon, 2020-05-11 22:43
2
979 by lanselibai
Tue, 2020-05-12 20:25
Normal topic wallpaper symmetry definition file
by aaj » Fri, 2016-02-26 08:40
0
981 by aaj
Fri, 2016-02-26 08:40
Normal topic Comparative modeling of metalloproteins
by ctqwong » Sun, 2020-07-12 13:51
3
984 by ctqwong
Mon, 2020-07-27 01:48
Normal topic Comparative modeling using a two chained template for a one chain structure
by ahmadkhalifa » Mon, 2017-12-18 11:00
1
985 by rmoretti
Mon, 2018-01-15 16:14
Normal topic FloppyTail as a rosettascripts file
by tiagogomes89 » Mon, 2015-01-19 02:45
0
1,000 by tiagogomes89
Mon, 2015-01-19 02:45
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
0
1,004 by felipet
Wed, 2014-07-02 10:23
Normal topic What is a rational minimal value for the "-nstruct" option
by Sunyp_IM » Fri, 2020-05-22 01:28
3
1,010 by nannemdp
Sun, 2020-05-24 14:46
Normal topic Rosetta fragment tools installation error
by Danielsebas » Thu, 2019-08-29 02:17
2
1,012 by Danielsebas
Sun, 2019-09-01 02:38
Normal topic antibody modeling error
by mxp » Mon, 2019-09-16 18:29
2
1,016 by mxp
Mon, 2019-09-23 01:40
Normal topic RosettaCM: An internal error has occurred when "Running the Hybridize mover"
by haom » Mon, 2020-06-15 05:56
4
1,017 by haom
Tue, 2020-06-16 05:55
Normal topic Question about fastsaxs and saxs_score
by orionshih » Thu, 2019-06-13 02:30
2
1,021 by orionshih
Wed, 2019-06-26 03:54
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
1
1,022 by Andre Serobian
Wed, 2020-07-08 04:44
Normal topic Problem passing a list of PDB files to minimize_with_cst
by dolevrahat » Sun, 2018-11-18 16:13
1
1,022 by rmoretti
Wed, 2018-11-21 15:31
Normal topic error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease
by xinmiaohe » Thu, 2020-01-30 22:09
1
1,023 by xinmiaohe
Fri, 2020-01-31 08:23
Normal topic ProteinInterfaceDesign algorithm questions
by tsztain » Mon, 2019-02-18 14:10
1
1,023 by rmoretti
Sun, 2019-08-25 19:15
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
1
1,028 by rmoretti
Tue, 2017-10-10 10:08
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - Applications