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Rosetta 3 - Applications
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PDB file name too long to be handled by file system by dave » Thu, 2019-08-08 03:10 |
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797 |
by rmoretti Mon, 2019-08-26 12:17 |
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DDG and interaction score problem by a-eatemadi@razi... » Mon, 2018-04-09 22:54 |
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797 |
by a-eatemadi@razi... Mon, 2018-04-09 22:54 |
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remodel ERROR: unrecognized mm_atom_type_name RGU by daniloboskovic » Sat, 2020-02-22 11:55 |
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808 |
by daniloboskovic Tue, 2020-02-25 08:28 |
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DDG_monomer ΔΔG question by asbelx » Fri, 2018-04-20 03:31 |
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817 |
by asbelx Fri, 2018-04-20 03:33 |
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RosettaCM by jlawrie » Fri, 2020-08-14 14:09 |
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822 |
by jlawrie Fri, 2020-08-14 14:09 |
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FASTA for Octopus by Smbat » Wed, 2020-09-16 05:40 |
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822 |
by rmoretti Wed, 2020-09-16 22:11 |
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Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively? by johnnytam100 » Fri, 2019-08-23 21:10 |
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824 |
by rmoretti Mon, 2019-08-26 12:03 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
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825 |
by everyday847 Fri, 2019-08-23 04:08 |
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/database folder after running "install_dependencies.pl" size 657 GB? by Danielsebas » Tue, 2019-09-03 03:32 |
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829 |
by danpf Tue, 2019-09-03 10:15 |
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get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
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830 |
by xinmiaohe Fri, 2020-02-07 13:52 |
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Error: in membrane docking : Cannot split pose by membrane jump! Quitting... by Astghik » Tue, 2020-11-24 05:27 |
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832 |
by Astghik Thu, 2020-12-03 02:35 |
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Protein-Protein Docking or Comparative Modeling by Morrian_Lynn » Wed, 2020-01-29 19:01 |
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834 |
by danpf Fri, 2020-02-21 18:23 |
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fixing sequence during grafting in antibody_designer by COM » Fri, 2020-01-24 11:38 |
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844 |
by jadolfbr Tue, 2020-01-28 09:13 |
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how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
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844 |
by qq7678500549 Sun, 2020-08-09 18:59 |
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FlexPepDock Multi chain receptor by evo_umich » Mon, 2018-04-02 12:13 |
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847 |
by evo_umich Mon, 2018-04-02 12:13 |
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Strong bias in sampling observed in RosettaDock by chenna » Thu, 2020-08-27 22:23 |
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848 |
by chenna Tue, 2021-10-12 20:51 |
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Issue with Rosetta LinkResidues Script by adityapadhi » Wed, 2019-11-20 22:00 |
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849 |
by JackMaguire Fri, 2019-11-22 13:45 |
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where is generate_ligens.linuxgccrelease? by Nicole Deng » Thu, 2020-12-03 00:00 |
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851 |
by Nicole Deng Fri, 2020-12-18 00:28 |
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Error when trying docking protocol with different ligand by scyphs » Wed, 2020-08-05 04:37 |
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852 |
by scyphs Mon, 2020-08-10 08:09 |
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How to analyse multiple silent files from "Abinitiorelax" output to find best models? by Danielsebas » Tue, 2019-09-10 10:01 |
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860 |
by smlewis Mon, 2019-09-16 12:22 |
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Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
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860 |
by vizcarra Thu, 2021-08-26 10:16 |
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Robetta ab initio - TrRosetta for membrane proteins by benhardy » Wed, 2020-09-30 08:42 |
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861 |
by benhardy Wed, 2020-09-30 08:42 |
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how to generate the whole molecule that contains all the symmetric chains by Sunyp_IM » Sun, 2017-12-10 19:43 |
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862 |
by Sunyp_IM Sun, 2017-12-10 19:43 |
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How to design the anitgen-antibody interface by Sunyp_IM » Tue, 2017-12-12 18:44 |
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870 |
by Sunyp_IM Tue, 2017-12-12 18:44 |
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density scoring by Tianyang89 » Sat, 2020-08-29 04:54 |
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871 |
by danpf Sun, 2020-08-30 22:23 |
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backrub application, resfile, and pivot_residues by tylerborrman » Tue, 2016-12-06 14:46 |
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879 |
by tylerborrman Tue, 2016-12-06 14:46 |
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Can I use rosetta binaries built in one linux system to another linux system? by Danielsebas » Wed, 2019-09-18 06:49 |
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884 |
by rmoretti Wed, 2019-09-18 10:36 |
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antibody protocol fails by hamedkhakzad » Mon, 2019-08-19 07:43 |
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885 |
by smlewis Tue, 2019-10-22 09:45 |
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AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
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887 |
by vmulligan Thu, 2019-06-13 15:01 |
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Docking-RMS value nan by jlawrie » Wed, 2020-08-12 07:03 |
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889 |
by jlawrie Wed, 2020-08-12 07:27 |
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The relax qustion of Rosetta VIP by asbelx » Mon, 2019-06-10 07:52 |
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891 |
by rmoretti Mon, 2019-06-24 14:42 |
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denovo modelling on a virus-coat protein dimer by aseem121 » Wed, 2019-10-16 06:55 |
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897 |
by danpf Wed, 2019-10-16 13:03 |
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hbond_sr_bb and hbond_lr_bb for different chains by tylerborrman » Tue, 2020-10-13 13:41 |
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905 |
by tylerborrman Tue, 2021-02-09 16:33 |
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Successful RosettaCM? by jlawrie » Wed, 2020-08-19 06:53 |
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906 |
by jlawrie Thu, 2020-08-20 11:00 |
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Thread target sequence by duz » Thu, 2021-04-01 10:09 |
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908 |
by duz Mon, 2021-05-03 07:50 |
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LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
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910 |
by matteoferla Thu, 2020-07-02 07:27 |
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Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
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910 |
by jadolfbr Thu, 2019-09-19 08:53 |
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Loop modeling with constraints by agctomer » Sat, 2021-03-20 03:53 |
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923 |
by agctomer Thu, 2021-04-08 07:37 |
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"install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage by Corvin » Thu, 2019-10-10 02:20 |
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931 |
by danpf Thu, 2019-10-10 09:55 |
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debug rosetta_scripts FunFolDes run by tatsiana.bylund » Sun, 2019-08-18 23:17 |
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935 |
by neelamraju.srid... Wed, 2020-11-18 05:47 |
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RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow? by brspurri » Thu, 2020-05-14 11:15 |
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936 |
by brspurri Thu, 2020-05-14 12:24 |
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ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator> by DGR95 » Fri, 2021-04-16 19:26 |
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936 |
by DGR95 Wed, 2021-04-28 16:13 |
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hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
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937 |
by rmoretti Fri, 2019-03-29 09:45 |
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pmut_scan_parallel by G Mustafa » Wed, 2018-10-17 05:41 |
0 |
940 |
by G Mustafa Wed, 2018-10-17 05:41 |
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RosettaScripts filter BuriedUnsatHbonds2 missing still by zdaw » Fri, 2020-12-11 12:39 |
3 |
940 |
by zdaw Tue, 2020-12-15 15:38 |
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RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
3 |
946 |
by everyday847 Wed, 2020-12-09 21:46 |
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Scoring docking error by almeida85 » Wed, 2020-09-02 01:32 |
2 |
950 |
by almeida85 Wed, 2020-09-02 06:14 |
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kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
1 |
952 |
by bjharris Wed, 2020-07-01 23:25 |
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how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot? by Danielsebas » Tue, 2019-09-24 03:51 |
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955 |
by smlewis Tue, 2019-09-24 12:43 |
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PDB moves after relaxing by Hr13b » Fri, 2018-07-27 13:12 |
1 |
959 |
by smlewis Fri, 2018-07-27 13:32 |
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input file for loop modeling by Negarsardar » Tue, 2019-04-16 10:21 |
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963 |
by rmoretti Tue, 2019-04-16 11:07 |
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ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
2 |
965 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
2 |
968 |
by jlawrie Wed, 2020-08-12 08:57 |
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minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion by Kharlamov1317a » Mon, 2020-09-21 08:46 |
1 |
968 |
by Kharlamov1317a Wed, 2020-10-07 08:26 |
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protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
1 |
970 |
by rmoretti Wed, 2019-07-10 09:24 |
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PlaceStub filter by a-eatemadi@razi... » Wed, 2017-11-15 04:19 |
0 |
970 |
by a-eatemadi@razi... Mon, 2017-12-04 23:52 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
2 |
970 |
by Kotimedidhi Mon, 2020-06-22 16:19 |
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Predicting the part of protein strcutrue by ksy141 » Tue, 2018-10-16 11:47 |
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972 |
by jadolfbr Fri, 2018-11-09 14:28 |
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not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
2 |
974 |
by xinmiaohe Mon, 2020-10-19 13:18 |
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ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
1 |
978 |
by rmoretti Wed, 2018-11-21 15:10 |
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Abinitio the Broker protocol by ac.research » Sun, 2019-03-24 03:56 |
1 |
981 |
by rmoretti Fri, 2019-04-05 00:18 |
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Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
2 |
982 |
by tuleshwori Thu, 2020-05-21 02:08 |
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Using abinition to predict a new (previously unsolved) structure. by ac.research » Mon, 2017-01-09 00:59 |
0 |
982 |
by ac.research Mon, 2017-01-09 00:59 |
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Number of max allowed mutations from WT sequence by mouung » Fri, 2020-09-04 02:33 |
2 |
985 |
by amorin Fri, 2021-02-12 08:53 |
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How to freeze ligand during FastRelax? by dnamkr » Thu, 2020-01-02 14:53 |
1 |
988 |
by aloshbau Fri, 2020-01-10 16:48 |
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Homology Modeling-no PDB output by jlawrie » Wed, 2020-08-12 06:30 |
2 |
990 |
by jlawrie Wed, 2020-08-12 08:56 |
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Sampling a wider range of RMSD of poses by Rosetta Dock by johnnytam100 » Tue, 2019-05-21 22:28 |
1 |
992 |
by johnnytam100 Thu, 2019-05-23 20:52 |
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Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
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994 |
by rmoretti Mon, 2019-06-24 14:39 |
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Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1 by cm21 » Wed, 2020-05-20 08:55 |
2 |
997 |
by cm21 Wed, 2020-05-20 11:22 |
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"Angle constraint: 0-length bonds" error by purvi24 » Sun, 2019-07-28 10:09 |
1 |
997 |
by rmoretti Mon, 2019-08-26 12:49 |
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docking with capping groups by xavierfradera » Sun, 2018-11-04 16:17 |
1 |
999 |
by maral.adeli-kou... Wed, 2020-01-22 12:41 |
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nstruct vs. trials? by chrisHKL » Mon, 2020-03-02 13:22 |
2 |
1,002 |
by chrisHKL Wed, 2020-03-04 10:49 |
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"core.kinematics.FoldTree" error upon running RAbD by Sunyp_IM » Fri, 2020-06-26 17:27 |
2 |
1,009 |
by Sunyp_IM Fri, 2020-06-26 20:57 |
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loop design for Conformational bias by dhirajks » Thu, 2019-05-09 21:22 |
1 |
1,016 |
by jadolfbr Fri, 2019-05-10 07:53 |
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BUG REPORT: Remodel Resfile ERROR: LEU was added more than once? by daniloboskovic » Wed, 2020-04-29 01:17 |
2 |
1,022 |
by daniloboskovic Wed, 2020-04-29 05:51 |
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Usage of the TaskOperations "RestrictToCDRsAndNeighbors" by johnnytam100 » Wed, 2019-04-10 02:58 |
1 |
1,025 |
by rmoretti Wed, 2019-07-10 10:10 |
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Threading with Ligand by ekwan » Thu, 2018-12-06 15:10 |
1 |
1,032 |
by rmoretti Fri, 2019-03-29 13:21 |
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Question on restraining receptor symmetry when docking ligand by subha » Fri, 2018-07-06 21:59 |
1 |
1,033 |
by rmoretti Fri, 2018-08-03 08:16 |
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Rosetta antibody- modeling in the presense of an antigen by agctomer » Mon, 2021-02-01 03:19 |
4 |
1,042 |
by nannemdp Wed, 2021-02-03 08:52 |
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Protein Protein Docking with Constraints by ajaniharesh » Wed, 2019-04-10 07:26 |
1 |
1,043 |
by rmoretti Thu, 2019-05-09 15:40 |
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Error with Formatdb of legacy blast when running "install_dependencies.pl"? by Danielsebas » Mon, 2019-09-16 09:30 |
2 |
1,049 |
by Danielsebas Tue, 2019-09-17 01:03 |
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algebric library for rosetta by yigallah » Mon, 2014-12-15 08:46 |
0 |
1,053 |
by yigallah Mon, 2014-12-15 08:46 |
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crazy loopmodel: linear output pdbs by fred » Wed, 2014-12-03 12:27 |
0 |
1,053 |
by fred Wed, 2014-12-03 12:28 |
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Rosetta scripts crash in CM workflow by jlburkhead » Tue, 2019-12-03 22:55 |
1 |
1,056 |
by danpf Fri, 2020-02-21 18:37 |
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can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
1 |
1,059 |
by xinmiaohe Mon, 2019-08-26 18:16 |
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wallpaper symmetry definition file by aaj » Fri, 2016-02-26 08:40 |
0 |
1,063 |
by aaj Fri, 2016-02-26 08:40 |
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Rosetta_cm Partial Threading Removing Parts of Sequence by gszwabowski » Thu, 2019-06-20 12:30 |
1 |
1,068 |
by rmoretti Mon, 2019-06-24 13:43 |
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broker domain insertion by dhirajks » Sun, 2018-05-06 12:55 |
1 |
1,070 |
by rmoretti Fri, 2018-05-18 12:28 |
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FloppyTail as a rosettascripts file by tiagogomes89 » Mon, 2015-01-19 02:45 |
0 |
1,073 |
by tiagogomes89 Mon, 2015-01-19 02:45 |
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Relaxing protein-RNA complexes by rkirchdo » Fri, 2018-08-03 08:50 |
1 |
1,076 |
by rmoretti Fri, 2018-08-24 11:28 |
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Coding denovo prediction from density maps in PyRosetta by ahmadkhalifa » Tue, 2018-04-10 11:43 |
1 |
1,077 |
by rmoretti Tue, 2018-04-10 15:29 |
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Symmetric assembly and output reconstruction by felipet » Wed, 2014-07-02 10:23 |
0 |
1,078 |
by felipet Wed, 2014-07-02 10:23 |
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change number of output pose files written out (default=50) in ligand docking XML script by hdelrisco » Fri, 2019-10-18 13:50 |
2 |
1,078 |
by hdelrisco Fri, 2019-10-18 17:16 |
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make_fragments.pl error by almeida85 » Mon, 2020-08-31 04:39 |
2 |
1,079 |
by almeida85 Tue, 2020-09-01 01:29 |
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Any progress on getting intermediate structures during a design? by broomsday » Mon, 2020-03-16 06:46 |
2 |
1,081 |
by vmulligan Tue, 2020-03-17 11:35 |
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OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
2 |
1,088 |
by bjharris Thu, 2020-07-02 11:09 |
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Ligand docking cannot open the protein file by swarekwood » Tue, 2017-10-17 08:17 |
1 |
1,088 |
by rmoretti Tue, 2017-10-17 09:03 |
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Comparative modeling using a two chained template for a one chain structure by ahmadkhalifa » Mon, 2017-12-18 11:00 |
1 |
1,089 |
by rmoretti Mon, 2018-01-15 16:14 |
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antibody.linuxgccrelease- output models don't have the same sequence as the input fasta by agctomer » Thu, 2021-01-21 15:35 |
4 |
1,092 |
by agctomer Sun, 2021-01-31 01:06 |
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Relax with RDC data gives segmentation fault by sn » Mon, 2018-07-23 11:39 |
1 |
1,093 |
by rmoretti Fri, 2018-08-03 07:54 |
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