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Rosetta 3 - Applications
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AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
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747 |
by vmulligan Thu, 2019-06-13 15:01 |
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denovo modelling on a virus-coat protein dimer by aseem121 » Wed, 2019-10-16 06:55 |
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748 |
by danpf Wed, 2019-10-16 13:03 |
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Number of max allowed mutations from WT sequence by mouung » Fri, 2020-09-04 02:33 |
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752 |
by amorin Fri, 2021-02-12 08:53 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
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755 |
by jlawrie Wed, 2020-08-12 08:57 |
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not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
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755 |
by xinmiaohe Mon, 2020-10-19 13:18 |
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RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow? by brspurri » Thu, 2020-05-14 11:15 |
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756 |
by brspurri Thu, 2020-05-14 12:24 |
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FlexPepDock Multi chain receptor by evo_umich » Mon, 2018-04-02 12:13 |
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762 |
by evo_umich Mon, 2018-04-02 12:13 |
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Scoring docking error by almeida85 » Wed, 2020-09-02 01:32 |
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764 |
by almeida85 Wed, 2020-09-02 06:14 |
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The relax qustion of Rosetta VIP by asbelx » Mon, 2019-06-10 07:52 |
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764 |
by rmoretti Mon, 2019-06-24 14:42 |
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Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
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765 |
by jadolfbr Thu, 2019-09-19 08:53 |
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antibody.linuxgccrelease- output models don't have the same sequence as the input fasta by agctomer » Thu, 2021-01-21 15:35 |
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767 |
by agctomer Sun, 2021-01-31 01:06 |
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how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot? by Danielsebas » Tue, 2019-09-24 03:51 |
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771 |
by smlewis Tue, 2019-09-24 12:43 |
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"install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage by Corvin » Thu, 2019-10-10 02:20 |
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775 |
by danpf Thu, 2019-10-10 09:55 |
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Homology Modeling-no PDB output by jlawrie » Wed, 2020-08-12 06:30 |
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777 |
by jlawrie Wed, 2020-08-12 08:56 |
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Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
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780 |
by tuleshwori Thu, 2020-05-21 02:08 |
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kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
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785 |
by bjharris Wed, 2020-07-01 23:25 |
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How to design the anitgen-antibody interface by Sunyp_IM » Tue, 2017-12-12 18:44 |
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788 |
by Sunyp_IM Tue, 2017-12-12 18:44 |
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how to generate the whole molecule that contains all the symmetric chains by Sunyp_IM » Sun, 2017-12-10 19:43 |
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789 |
by Sunyp_IM Sun, 2017-12-10 19:43 |
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ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
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790 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
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debug rosetta_scripts FunFolDes run by tatsiana.bylund » Sun, 2019-08-18 23:17 |
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792 |
by neelamraju.srid... Wed, 2020-11-18 05:47 |
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backrub application, resfile, and pivot_residues by tylerborrman » Tue, 2016-12-06 14:46 |
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794 |
by tylerborrman Tue, 2016-12-06 14:46 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
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795 |
by Kotimedidhi Mon, 2020-06-22 16:19 |
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"core.kinematics.FoldTree" error upon running RAbD by Sunyp_IM » Fri, 2020-06-26 17:27 |
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804 |
by Sunyp_IM Fri, 2020-06-26 20:57 |
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Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1 by cm21 » Wed, 2020-05-20 08:55 |
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813 |
by cm21 Wed, 2020-05-20 11:22 |
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nstruct vs. trials? by chrisHKL » Mon, 2020-03-02 13:22 |
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816 |
by chrisHKL Wed, 2020-03-04 10:49 |
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pmut_scan_parallel by G Mustafa » Wed, 2018-10-17 05:41 |
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817 |
by G Mustafa Wed, 2018-10-17 05:41 |
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make_fragments.pl error by almeida85 » Mon, 2020-08-31 04:39 |
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820 |
by almeida85 Tue, 2020-09-01 01:29 |
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BUG REPORT: Remodel Resfile ERROR: LEU was added more than once? by daniloboskovic » Wed, 2020-04-29 01:17 |
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820 |
by daniloboskovic Wed, 2020-04-29 05:51 |
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Can rosetta generate a centroid model based on the rna sequence? by yels » Fri, 2021-03-26 04:06 |
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829 |
by yels Wed, 2021-03-31 18:31 |
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hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
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829 |
by rmoretti Fri, 2019-03-29 09:45 |
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Predicting the part of protein strcutrue by ksy141 » Tue, 2018-10-16 11:47 |
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832 |
by jadolfbr Fri, 2018-11-09 14:28 |
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protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
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835 |
by rmoretti Wed, 2019-07-10 09:24 |
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ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
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838 |
by rmoretti Wed, 2018-11-21 15:10 |
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How to freeze ligand during FastRelax? by dnamkr » Thu, 2020-01-02 14:53 |
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839 |
by aloshbau Fri, 2020-01-10 16:48 |
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Abinitio the Broker protocol by ac.research » Sun, 2019-03-24 03:56 |
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839 |
by rmoretti Fri, 2019-04-05 00:18 |
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"Angle constraint: 0-length bonds" error by purvi24 » Sun, 2019-07-28 10:09 |
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840 |
by rmoretti Mon, 2019-08-26 12:49 |
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input file for loop modeling by Negarsardar » Tue, 2019-04-16 10:21 |
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841 |
by rmoretti Tue, 2019-04-16 11:07 |
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Sampling a wider range of RMSD of poses by Rosetta Dock by johnnytam100 » Tue, 2019-05-21 22:28 |
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844 |
by johnnytam100 Thu, 2019-05-23 20:52 |
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PDB moves after relaxing by Hr13b » Fri, 2018-07-27 13:12 |
1 |
844 |
by smlewis Fri, 2018-07-27 13:32 |
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issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
3 |
846 |
by He Xiao Sun, 2021-04-11 19:29 |
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Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
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850 |
by rmoretti Mon, 2019-06-24 14:39 |
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Error with Formatdb of legacy blast when running "install_dependencies.pl"? by Danielsebas » Mon, 2019-09-16 09:30 |
2 |
856 |
by Danielsebas Tue, 2019-09-17 01:03 |
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Any progress on getting intermediate structures during a design? by broomsday » Mon, 2020-03-16 06:46 |
2 |
856 |
by vmulligan Tue, 2020-03-17 11:35 |
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docking with capping groups by xavierfradera » Sun, 2018-11-04 16:17 |
1 |
862 |
by maral.adeli-kou... Wed, 2020-01-22 12:41 |
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OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
2 |
864 |
by bjharris Thu, 2020-07-02 11:09 |
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PlaceStub filter by a-eatemadi@razi... » Wed, 2017-11-15 04:19 |
0 |
872 |
by a-eatemadi@razi... Mon, 2017-12-04 23:52 |
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Usage of the TaskOperations "RestrictToCDRsAndNeighbors" by johnnytam100 » Wed, 2019-04-10 02:58 |
1 |
880 |
by rmoretti Wed, 2019-07-10 10:10 |
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Protein Protein Docking with Constraints by ajaniharesh » Wed, 2019-04-10 07:26 |
1 |
881 |
by rmoretti Thu, 2019-05-09 15:40 |
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VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
1 |
883 |
by jeliazkov Mon, 2019-06-17 06:03 |
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loop design for Conformational bias by dhirajks » Thu, 2019-05-09 21:22 |
1 |
885 |
by jadolfbr Fri, 2019-05-10 07:53 |
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Threading with Ligand by ekwan » Thu, 2018-12-06 15:10 |
1 |
885 |
by rmoretti Fri, 2019-03-29 13:21 |
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can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
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887 |
by xinmiaohe Mon, 2019-08-26 18:16 |
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change number of output pose files written out (default=50) in ligand docking XML script by hdelrisco » Fri, 2019-10-18 13:50 |
2 |
888 |
by hdelrisco Fri, 2019-10-18 17:16 |
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The usage of antibody_H3.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 22:50 |
2 |
889 |
by Sunyp_IM Thu, 2020-06-04 08:20 |
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Can't generate a cst file to use with ddg_monomer application by ctqwong » Sat, 2021-03-13 03:53 |
6 |
889 |
by ctqwong Thu, 2021-03-18 02:04 |
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Rosetta scripts crash in CM workflow by jlburkhead » Tue, 2019-12-03 22:55 |
1 |
896 |
by danpf Fri, 2020-02-21 18:37 |
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RosettaCM or FastRelax? by Tianyang89 » Wed, 2020-09-23 07:46 |
3 |
901 |
by danpf Thu, 2020-09-24 13:44 |
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Using abinition to predict a new (previously unsolved) structure. by ac.research » Mon, 2017-01-09 00:59 |
0 |
905 |
by ac.research Mon, 2017-01-09 00:59 |
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Question on restraining receptor symmetry when docking ligand by subha » Fri, 2018-07-06 21:59 |
1 |
912 |
by rmoretti Fri, 2018-08-03 08:16 |
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Rosetta_cm Partial Threading Removing Parts of Sequence by gszwabowski » Thu, 2019-06-20 12:30 |
1 |
913 |
by rmoretti Mon, 2019-06-24 13:43 |
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Prevention of the negatively charged Nitrogen protonation by coupled_moves by Corvin » Wed, 2020-11-18 02:56 |
4 |
919 |
by Corvin Wed, 2020-11-25 02:58 |
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Is native.pdb necess for fragment_picker？ by ylwang » Thu, 2020-03-12 00:57 |
2 |
919 |
by ylwang Thu, 2020-03-12 20:42 |
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How does the label in pdb files looks like when using ResiduePDBInfoHasLabel? by johnnytam100 » Fri, 2019-08-16 00:25 |
1 |
921 |
by JackMaguire Fri, 2019-08-16 07:41 |
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Relax with multiple small molecules by jharamesh » Sun, 2019-05-26 19:34 |
1 |
922 |
by rmoretti Mon, 2019-06-24 15:19 |
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missing atom number 5 atom name CB by ajaniharesh » Fri, 2019-04-26 12:08 |
1 |
928 |
by rmoretti Fri, 2019-04-26 12:13 |
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Remodel: the pose does not have residue with chain=H, PDBnum=114 by lanselibai » Wed, 2019-12-25 13:35 |
1 |
936 |
by lanselibai Fri, 2019-12-27 09:38 |
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broker domain insertion by dhirajks » Sun, 2018-05-06 12:55 |
1 |
936 |
by rmoretti Fri, 2018-05-18 12:28 |
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relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
5 |
937 |
by jadolfbr Fri, 2021-01-15 08:06 |
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Ligand docking cannot open the protein file by swarekwood » Tue, 2017-10-17 08:17 |
1 |
939 |
by rmoretti Tue, 2017-10-17 09:03 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
2 |
940 |
by Martin Floor Tue, 2020-01-21 11:15 |
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Relaxing protein-RNA complexes by rkirchdo » Fri, 2018-08-03 08:50 |
1 |
941 |
by rmoretti Fri, 2018-08-24 11:28 |
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ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
2 |
943 |
by Ruska322 Fri, 2019-09-06 07:13 |
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Coding denovo prediction from density maps in PyRosetta by ahmadkhalifa » Tue, 2018-04-10 11:43 |
1 |
945 |
by rmoretti Tue, 2018-04-10 15:29 |
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Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex by benhardy » Mon, 2020-06-15 09:33 |
3 |
950 |
by benhardy Fri, 2020-06-19 07:55 |
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AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
2 |
952 |
by vmulligan Thu, 2019-06-13 14:59 |
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Highly negative total score by Ruchi_P_Jain » Wed, 2019-04-24 19:55 |
1 |
963 |
by nannemdp Thu, 2019-04-25 07:58 |
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Imitating induced fit protocol in SymDock2 without any symmetry constraints by chenna » Fri, 2020-02-14 01:35 |
2 |
966 |
by chenna Wed, 2020-03-04 03:24 |
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Relax with RDC data gives segmentation fault by sn » Mon, 2018-07-23 11:39 |
1 |
968 |
by rmoretti Fri, 2018-08-03 07:54 |
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crazy loopmodel: linear output pdbs by fred » Wed, 2014-12-03 12:27 |
0 |
969 |
by fred Wed, 2014-12-03 12:28 |
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Two questions on the RosettaScripts flexbb-interfacedesign.xml by johnnytam100 » Fri, 2019-03-15 04:54 |
1 |
969 |
by rmoretti Fri, 2019-03-29 09:58 |
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Question on Designing with NCAAs by salvatta » Mon, 2018-09-10 10:09 |
1 |
969 |
by rmoretti Thu, 2018-09-20 09:23 |
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De novo water predictions using SPaDES by MNP1986 » Mon, 2019-03-25 07:53 |
1 |
972 |
by matteoferla Tue, 2020-08-04 09:30 |
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algebric library for rosetta by yigallah » Mon, 2014-12-15 08:46 |
0 |
976 |
by yigallah Mon, 2014-12-15 08:46 |
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output file in ddg calcualtion by malkeet.singh » Sun, 2017-12-03 07:59 |
1 |
978 |
by malkeet.singh Wed, 2017-12-06 02:02 |
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How to run partial_thread in RosettaCM when residure are more than 9999? by lanselibai » Mon, 2020-05-11 22:43 |
2 |
979 |
by lanselibai Tue, 2020-05-12 20:25 |
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wallpaper symmetry definition file by aaj » Fri, 2016-02-26 08:40 |
0 |
981 |
by aaj Fri, 2016-02-26 08:40 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
3 |
984 |
by ctqwong Mon, 2020-07-27 01:48 |
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Comparative modeling using a two chained template for a one chain structure by ahmadkhalifa » Mon, 2017-12-18 11:00 |
1 |
985 |
by rmoretti Mon, 2018-01-15 16:14 |
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FloppyTail as a rosettascripts file by tiagogomes89 » Mon, 2015-01-19 02:45 |
0 |
1,000 |
by tiagogomes89 Mon, 2015-01-19 02:45 |
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Symmetric assembly and output reconstruction by felipet » Wed, 2014-07-02 10:23 |
0 |
1,004 |
by felipet Wed, 2014-07-02 10:23 |
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What is a rational minimal value for the "-nstruct" option by Sunyp_IM » Fri, 2020-05-22 01:28 |
3 |
1,010 |
by nannemdp Sun, 2020-05-24 14:46 |
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Rosetta fragment tools installation error by Danielsebas » Thu, 2019-08-29 02:17 |
2 |
1,012 |
by Danielsebas Sun, 2019-09-01 02:38 |
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antibody modeling error by mxp » Mon, 2019-09-16 18:29 |
2 |
1,016 |
by mxp Mon, 2019-09-23 01:40 |
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RosettaCM: An internal error has occurred when "Running the Hybridize mover" by haom » Mon, 2020-06-15 05:56 |
4 |
1,017 |
by haom Tue, 2020-06-16 05:55 |
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Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
2 |
1,021 |
by orionshih Wed, 2019-06-26 03:54 |
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PEPSPEC by Neeraj » Wed, 2018-01-03 02:24 |
1 |
1,022 |
by Andre Serobian Wed, 2020-07-08 04:44 |
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Problem passing a list of PDB files to minimize_with_cst by dolevrahat » Sun, 2018-11-18 16:13 |
1 |
1,022 |
by rmoretti Wed, 2018-11-21 15:31 |
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error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease by xinmiaohe » Thu, 2020-01-30 22:09 |
1 |
1,023 |
by xinmiaohe Fri, 2020-01-31 08:23 |
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ProteinInterfaceDesign algorithm questions by tsztain » Mon, 2019-02-18 14:10 |
1 |
1,023 |
by rmoretti Sun, 2019-08-25 19:15 |
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Surface Docking Crash (continued) by dkozuch » Tue, 2017-09-12 06:18 |
1 |
1,028 |
by rmoretti Tue, 2017-10-10 10:08 |
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