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Rosetta 3 - Applications
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:30 |
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1,099 |
by taylorjones Wed, 2021-06-09 16:38 |
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How to select docked models by Sunyp_IM » Mon, 2020-06-22 00:50 |
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1,099 |
by ssrb Mon, 2020-06-22 13:12 |
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Problem with Scoring function and PlaceStub mover by a-eatemadi@razi... » Sat, 2018-04-07 09:22 |
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1,101 |
by a-eatemadi@razi... Sat, 2018-04-07 09:24 |
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polymer docking using rosetta scripts by syntekabio2019 » Fri, 2020-11-27 01:51 |
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1,101 |
by rmoretti Fri, 2020-11-27 10:47 |
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antibody - sequence position requested was 0 by jremmel » Mon, 2021-09-27 12:26 |
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1,110 |
by nannemdp Mon, 2021-09-27 14:22 |
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DDG_monomer ΔΔG question by asbelx » Fri, 2018-04-20 03:31 |
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1,115 |
by asbelx Fri, 2018-04-20 03:33 |
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rosetta remodel and designing helix extension by dhirajks » Thu, 2018-12-13 19:34 |
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1,119 |
by dhirajks Thu, 2018-12-13 19:34 |
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Changing rosetta scoring to favour less hydrophobic areas by daniloboskovic » Thu, 2020-05-21 03:03 |
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1,120 |
by vmulligan Thu, 2020-05-21 18:33 |
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Can anybody suggests some flags to run Rifdock? by Hyunmi Song » Sun, 2022-01-23 16:45 |
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1,123 |
by Hyunmi Song Sun, 2022-01-23 16:45 |
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Ligand docking at specific orientation by ShiranBZ » Mon, 2020-04-13 20:46 |
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1,123 |
by matteoferla Mon, 2020-05-04 02:02 |
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pepspec anchor dock by Andre Serobian » Tue, 2020-07-28 05:51 |
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1,131 |
by Andre Serobian Tue, 2020-07-28 23:26 |
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[LoopModelerMover] ERROR: Can't build a fold tree from a loop with an unspecified cut point. by dgm3 » Sun, 2021-12-26 18:32 |
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1,135 |
by dgm3 Fri, 2021-12-31 17:42 |
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mp_transform optimize with franklin2019 scoring by benhardy » Thu, 2020-05-28 08:35 |
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1,146 |
by benhardy Thu, 2020-05-28 08:45 |
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how to generate the whole molecule that contains all the symmetric chains by Sunyp_IM » Sun, 2017-12-10 19:43 |
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1,149 |
by Sunyp_IM Sun, 2017-12-10 19:43 |
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I need some help for using pHDock applications(histidine protonation / pH-dependent binding) by leygkn » Tue, 2020-09-22 18:40 |
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1,152 |
by leygkn Tue, 2020-09-22 22:46 |
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How to design the anitgen-antibody interface by Sunyp_IM » Tue, 2017-12-12 18:44 |
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1,152 |
by Sunyp_IM Tue, 2017-12-12 18:44 |
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DDG and interaction score problem by a-eatemadi@razi... » Mon, 2018-04-09 22:54 |
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1,154 |
by a-eatemadi@razi... Mon, 2018-04-09 22:54 |
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Symmetry mode in Remodel for N-terminal extension by yvonne.chan2 » Mon, 2019-11-04 13:41 |
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1,158 |
by yvonne.chan2 Mon, 2019-11-04 13:41 |
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FlexPepDock Multi chain receptor by evo_umich » Mon, 2018-04-02 12:13 |
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1,162 |
by evo_umich Mon, 2018-04-02 12:13 |
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Ddg filter threshold value? by chrisHKL » Fri, 2020-02-28 15:01 |
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1,172 |
by rmoretti Wed, 2020-03-04 09:56 |
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How can I model ligands in comparative modeling by Morrian_Lynn » Thu, 2020-02-20 09:57 |
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1,173 |
by danpf Fri, 2020-02-21 17:05 |
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manually defining CDRs in antibody modelling by gard.nelson » Fri, 2020-07-10 13:31 |
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1,173 |
by brspurri Wed, 2021-01-20 08:11 |
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'standard.wts' does not exist by almeida85 » Mon, 2020-09-14 02:26 |
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1,174 |
by rmoretti Mon, 2020-09-14 06:36 |
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using piper-flexpepdock by syntekabio2019 » Thu, 2019-12-12 01:22 |
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1,179 |
by syntekabio2019 Thu, 2019-12-12 01:22 |
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Modelling at defined pH - for pmutscan - pH:mode not working by cagfa1 » Tue, 2022-03-15 04:05 |
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1,179 |
by Rituparna_Saman... Wed, 2022-03-23 11:21 |
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setup_RosettaCM.py by browns02 » Mon, 2021-06-28 07:13 |
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1,180 |
by browns02 Tue, 2021-06-29 11:41 |
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core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by AlfredoKCL » Sat, 2020-11-07 18:21 |
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1,186 |
by AlfredoKCL Sat, 2020-11-07 18:21 |
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Energy function and iteration script files by michelleqyh » Fri, 2019-09-27 09:06 |
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1,195 |
by smlewis Fri, 2019-09-27 11:54 |
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backrub application, resfile, and pivot_residues by tylerborrman » Tue, 2016-12-06 14:46 |
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1,201 |
by tylerborrman Tue, 2016-12-06 14:46 |
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rosetta_cm segfault by browns02 » Fri, 2021-07-09 13:35 |
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1,205 |
by rmoretti Fri, 2021-07-09 15:05 |
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[Solved] RosettaAntibody3 - Grafting step is failing to detect H3 from the input sequence by brspurri » Mon, 2021-01-04 16:46 |
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1,222 |
by brspurri Mon, 2021-01-18 18:14 |
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Segmentation Fault in Rosetta CM Hybridize by yliang20 » Mon, 2022-06-06 17:25 |
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1,224 |
by yliang20 Tue, 2022-06-07 08:36 |
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Warning: Fold tree is not set properly for density scoring by ahansel » Mon, 2020-07-13 10:50 |
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1,231 |
by danpf Tue, 2020-07-14 10:27 |
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The difference between the H1 regions of modeled camelid antibody and the crystal structure. by Sunyp_IM » Sun, 2020-06-07 02:34 |
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1,231 |
by nannemdp Sun, 2020-06-07 08:01 |
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Symmetry definition question by mrconde96 » Sun, 2022-10-02 05:34 |
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1,243 |
by mrconde96 Sun, 2022-10-02 05:34 |
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antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages by AlfredoKCL » Sun, 2021-02-28 16:42 |
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1,254 |
by AlfredoKCL Mon, 2021-03-01 04:07 |
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Using abinition to predict a new (previously unsolved) structure. by ac.research » Mon, 2017-01-09 00:59 |
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1,259 |
by ac.research Mon, 2017-01-09 00:59 |
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cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues by ValentinaSora » Sun, 2020-05-24 12:32 |
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1,262 |
by ValentinaSora Sun, 2020-05-24 12:32 |
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Error from clean_pdb.py by code_Monkey » Mon, 2021-03-01 17:00 |
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1,264 |
by code_Monkey Thu, 2021-03-04 12:14 |
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Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations by yliang20 » Wed, 2022-06-15 11:26 |
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1,268 |
by yliang20 Wed, 2022-06-15 13:46 |
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Relax evaluates protein-DNA complexes? by pablogalazdavison » Thu, 2022-05-12 12:05 |
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1,270 |
by pablogalazdavison Fri, 2022-05-20 12:27 |
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DNA-protein docking by ksteczk » Sat, 2020-04-11 11:23 |
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1,270 |
by ksteczk Sat, 2020-04-11 11:23 |
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/database folder after running "install_dependencies.pl" size 657 GB? by Danielsebas » Tue, 2019-09-03 03:32 |
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1,272 |
by danpf Tue, 2019-09-03 10:15 |
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Protein-Protein Docking or Comparative Modeling by Morrian_Lynn » Wed, 2020-01-29 19:01 |
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1,273 |
by danpf Fri, 2020-02-21 18:23 |
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Generalized KIC loop closure affects downstream residues without perturbations by chenna » Mon, 2021-04-26 02:16 |
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1,274 |
by chenna Wed, 2021-04-28 07:18 |
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Robetta ab initio - TrRosetta for membrane proteins by benhardy » Wed, 2020-09-30 08:42 |
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1,274 |
by benhardy Wed, 2020-09-30 08:42 |
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PDB file name too long to be handled by file system by dave » Thu, 2019-08-08 03:10 |
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1,277 |
by rmoretti Mon, 2019-08-26 12:17 |
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get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
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1,282 |
by xinmiaohe Fri, 2020-02-07 13:52 |
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r_frag_quality by ii_cnr » Mon, 2021-04-12 03:06 |
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1,283 |
by ii_cnr Mon, 2021-04-12 23:44 |
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Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively? by johnnytam100 » Fri, 2019-08-23 21:10 |
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1,283 |
by rmoretti Mon, 2019-08-26 12:03 |
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The energy terms in InterfaceAnalyzer by Sunyp_IM » Tue, 2021-11-02 18:43 |
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1,283 |
by zivben Sat, 2021-11-13 04:49 |
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BuildPeptide - Using Phosphorylated and Sulfated Tyrosine by jlawrie » Thu, 2020-09-03 14:29 |
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1,284 |
by cryosky Mon, 2021-03-01 21:37 |
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fixing sequence during grafting in antibody_designer by COM » Fri, 2020-01-24 11:38 |
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1,288 |
by jadolfbr Tue, 2020-01-28 09:13 |
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Issue with Rosetta LinkResidues Script by adityapadhi » Wed, 2019-11-20 22:00 |
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1,290 |
by JackMaguire Fri, 2019-11-22 13:45 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
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1,296 |
by everyday847 Fri, 2019-08-23 04:08 |
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protein-ligand docking rescoring with interfaceAnalyzer by syntekabio2019 » Sat, 2020-12-19 03:59 |
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1,303 |
by syntekabio2019 Sun, 2020-12-20 21:10 |
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small ligand docking in Ubuntu 20.04, please help by guowuchen » Sun, 2022-03-06 18:12 |
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1,309 |
by guowuchen Mon, 2022-03-07 23:34 |
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Element 'trRosettaProtocol': This element is not expected. by csaylan » Tue, 2021-04-20 14:21 |
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1,322 |
by csaylan Tue, 2021-04-20 16:13 |
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D-amino acids tripeptide docking. by sam_dc » Sat, 2021-07-03 08:48 |
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1,325 |
by vmulligan Tue, 2021-07-06 08:27 |
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crazy loopmodel: linear output pdbs by fred » Wed, 2014-12-03 12:27 |
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1,326 |
by fred Wed, 2014-12-03 12:28 |
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How do I change the default Compiler for Rosetta？ by pagumaaaaa » Wed, 2022-03-16 00:23 |
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1,327 |
by pagumaaaaa Thu, 2022-03-24 22:40 |
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How to analyse multiple silent files from "Abinitiorelax" output to find best models? by Danielsebas » Tue, 2019-09-10 10:01 |
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1,329 |
by smlewis Mon, 2019-09-16 12:22 |
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algebric library for rosetta by yigallah » Mon, 2014-12-15 08:46 |
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1,330 |
by yigallah Mon, 2014-12-15 08:46 |
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The relax qustion of Rosetta VIP by asbelx » Mon, 2019-06-10 07:52 |
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1,331 |
by rmoretti Mon, 2019-06-24 14:42 |
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Help to understand docking results by rtorquato » Fri, 2022-11-25 12:05 |
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1,332 |
by rtorquato Fri, 2022-11-25 12:05 |
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AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
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1,335 |
by vmulligan Thu, 2019-06-13 15:01 |
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GeneralizedKIC loop closure error by chenna » Sat, 2021-04-10 00:21 |
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1,336 |
by chenna Mon, 2021-04-12 22:08 |
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PlaceStub filter by a-eatemadi@razi... » Wed, 2017-11-15 04:19 |
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1,345 |
by a-eatemadi@razi... Mon, 2017-12-04 23:52 |
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can remodel add loops in one chain in multichain PDB structure? by ksteczk » Fri, 2020-05-01 06:26 |
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1,349 |
by matteoferla Mon, 2020-05-04 01:43 |
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antibody protocol fails by hamedkhakzad » Mon, 2019-08-19 07:43 |
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1,352 |
by smlewis Tue, 2019-10-22 09:45 |
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FloppyTail as a rosettascripts file by tiagogomes89 » Mon, 2015-01-19 02:45 |
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1,356 |
by tiagogomes89 Mon, 2015-01-19 02:45 |
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remodel ERROR: unrecognized mm_atom_type_name RGU by daniloboskovic » Sat, 2020-02-22 11:55 |
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1,356 |
by daniloboskovic Tue, 2020-02-25 08:28 |
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denovo modelling on a virus-coat protein dimer by aseem121 » Wed, 2019-10-16 06:55 |
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1,357 |
by danpf Wed, 2019-10-16 13:03 |
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XML validation failing by mb0261 » Fri, 2023-04-14 14:53 |
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1,358 |
by mb0261 Mon, 2023-04-17 17:38 |
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wallpaper symmetry definition file by aaj » Fri, 2016-02-26 08:40 |
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1,360 |
by aaj Fri, 2016-02-26 08:40 |
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simple_cycpep_predict - Design mode - The base name "ARG" was added more than once by almeida85 » Thu, 2022-08-04 02:57 |
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1,361 |
by almeida85 Thu, 2022-08-11 00:58 |
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Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
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1,369 |
by jadolfbr Thu, 2019-09-19 08:53 |
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Can I use rosetta binaries built in one linux system to another linux system? by Danielsebas » Wed, 2019-09-18 06:49 |
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1,370 |
by rmoretti Wed, 2019-09-18 10:36 |
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pmut_scan_parallel by G Mustafa » Wed, 2018-10-17 05:41 |
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1,370 |
by G Mustafa Wed, 2018-10-17 05:41 |
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How to add additional rounds of design and optimization in Rosetta scripts? by Nicole Deng » Tue, 2020-11-03 19:05 |
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1,378 |
by Nicole Deng Thu, 2020-11-05 03:04 |
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Protein Ensemble RosettaLigand Docking by sam_dc » Fri, 2021-03-26 10:18 |
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1,378 |
by sam_dc Fri, 2021-03-26 12:04 |
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FASTA for Octopus by Smbat » Wed, 2020-09-16 05:40 |
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1,380 |
by rmoretti Wed, 2020-09-16 22:11 |
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protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
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1,383 |
by rmoretti Wed, 2019-07-10 09:24 |
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input file for loop modeling by Negarsardar » Tue, 2019-04-16 10:21 |
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1,384 |
by rmoretti Tue, 2019-04-16 11:07 |
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PDB moves after relaxing by Hr13b » Fri, 2018-07-27 13:12 |
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1,388 |
by smlewis Fri, 2018-07-27 13:32 |
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"install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage by Corvin » Thu, 2019-10-10 02:20 |
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1,389 |
by danpf Thu, 2019-10-10 09:55 |
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Disulfide Bonds in Loop Modeling by code_Monkey » Mon, 2021-05-03 08:27 |
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1,391 |
by code_Monkey Thu, 2021-05-06 07:14 |
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hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
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1,392 |
by rmoretti Fri, 2019-03-29 09:45 |
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debug rosetta_scripts FunFolDes run by tatsiana.bylund » Sun, 2019-08-18 23:17 |
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1,394 |
by neelamraju.srid... Wed, 2020-11-18 05:47 |
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Symmetric assembly and output reconstruction by felipet » Wed, 2014-07-02 10:23 |
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1,406 |
by felipet Wed, 2014-07-02 10:23 |
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kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
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1,406 |
by bjharris Wed, 2020-07-01 23:25 |
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RosettaCM by jlawrie » Fri, 2020-08-14 14:09 |
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1,407 |
by jlawrie Fri, 2020-08-14 14:09 |
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LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
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1,422 |
by matteoferla Thu, 2020-07-02 07:27 |
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how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
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1,425 |
by qq7678500549 Sun, 2020-08-09 18:59 |
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ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
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1,426 |
by rmoretti Wed, 2018-11-21 15:10 |
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Error when trying docking protocol with different ligand by scyphs » Wed, 2020-08-05 04:37 |
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1,433 |
by scyphs Mon, 2020-08-10 08:09 |
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Predicting the part of protein strcutrue by ksy141 » Tue, 2018-10-16 11:47 |
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1,437 |
by jadolfbr Fri, 2018-11-09 14:28 |
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Docking protein complexes when constrained by oligomer symmetry by msk » Tue, 2014-06-03 11:09 |
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1,438 |
by msk Tue, 2014-06-03 11:09 |
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ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ] by erpannec » Tue, 2022-08-09 05:42 |
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1,444 |
by erpannec Thu, 2022-09-15 05:17 |
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Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
1 |
1,445 |
by rmoretti Mon, 2019-06-24 14:39 |
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